Wall clock time and date at job start Mon Mar 30 2020 02:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35900 * 117.00704 * 2 1 4 4 C 1.38654 * 119.94464 * 0.02562 * 3 2 1 5 5 C 1.38115 * 119.86990 * 180.27953 * 4 3 2 6 6 C 1.38177 * 119.99703 * 359.43575 * 5 4 3 7 7 C 1.38502 * 120.33235 * 0.54076 * 6 5 4 8 8 C 1.38169 * 119.87935 * 359.74733 * 7 6 5 9 9 C 1.51359 * 109.77523 * 179.97438 * 8 7 6 10 10 C 1.54350 * 105.16747 * 342.81524 * 9 8 7 11 11 C 1.51379 * 130.36221 * 179.72614 * 7 6 5 12 12 H 1.08994 * 110.30273 * 316.13124 * 11 7 6 13 13 C 1.50699 * 110.30408 * 78.29060 * 11 7 6 14 14 H 1.07995 * 119.99901 * 118.54443 * 13 11 7 15 15 C 1.37878 * 119.99691 * 298.54299 * 13 11 7 16 16 N 1.31512 * 120.00044 * 0.02562 * 15 13 11 17 17 Si 1.86804 * 119.99718 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47007 * 90.00187 * 17 15 13 19 19 H 1.48499 * 109.46828 * 209.99928 * 17 15 13 20 20 H 1.48497 * 109.47015 * 329.99632 * 17 15 13 21 21 H 1.09009 * 109.47013 * 59.99643 * 1 2 3 22 22 H 1.08995 * 109.47445 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47026 * 299.99892 * 1 2 3 24 24 H 1.08002 * 120.06250 * 359.97438 * 4 3 2 25 25 H 1.07999 * 120.00036 * 179.72242 * 5 4 3 26 26 H 1.08000 * 119.83621 * 180.25995 * 6 5 4 27 27 H 1.09003 * 110.30465 * 101.73932 * 9 8 7 28 28 H 1.09000 * 110.30469 * 223.89400 * 9 8 7 29 29 H 1.08998 * 110.82435 * 268.11886 * 10 9 8 30 30 H 1.09007 * 110.99452 * 144.63669 * 10 9 8 31 31 H 0.97007 * 119.99877 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2900 2.3730 0.0005 5 6 1.9187 3.6027 -0.0053 6 6 3.2987 3.6731 0.0001 7 6 4.0581 2.5148 0.0001 8 6 3.4336 1.2823 0.0000 9 6 4.4727 0.1817 -0.0006 10 6 5.7847 0.8652 -0.4410 11 6 5.5602 2.3273 -0.0002 12 1 6.0266 3.0117 -0.7087 13 6 6.1149 2.5474 1.3836 14 1 6.6261 1.7448 1.8944 15 6 5.9698 3.7734 1.9975 16 7 5.3469 4.7506 1.3757 17 14 6.6580 4.0465 3.7126 18 1 8.0549 4.5402 3.6125 19 1 5.8278 5.0507 4.4249 20 1 6.6382 2.7655 4.4636 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 0.2114 2.3168 0.0005 25 1 1.3318 4.5093 -0.0094 26 1 3.7877 4.6360 -0.0002 27 1 4.5814 -0.2364 1.0001 28 1 4.1965 -0.5989 -0.7095 29 1 5.9111 0.8013 -1.5217 30 1 6.6424 0.4326 0.0742 31 1 5.2451 5.6133 1.8075 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084347631.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:12 Heat of formation + Delta-G solvation = -33.894295 kcal Electronic energy + Delta-G solvation = -14687.442556 eV Core-core repulsion = 12319.075407 eV Total energy + Delta-G solvation = -2368.367149 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.18299 -39.05067 -36.20086 -34.49042 -31.15873 -29.91379 -28.76962 -27.76461 -25.76500 -22.95171 -21.61845 -21.26534 -18.88632 -17.85372 -17.02694 -16.56701 -16.40567 -16.12959 -15.41199 -14.90625 -14.70281 -14.19270 -13.60206 -13.39345 -13.06871 -12.85909 -12.73528 -12.47941 -12.14926 -12.13818 -11.92458 -11.65259 -11.51592 -11.20227 -11.06518 -10.52149 -9.15814 -8.78069 -8.03304 -6.21954 0.70435 0.87131 1.40994 1.41875 1.51111 2.42446 2.58716 3.13794 3.20669 3.83488 4.10053 4.29284 4.39542 4.44877 4.47084 4.51549 4.71604 4.74686 4.82889 4.94606 5.15125 5.24680 5.29453 5.35166 5.43824 5.58398 5.66241 5.79783 6.00147 6.22835 6.27734 6.36133 6.70512 6.86961 7.43990 8.93961 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.033146 B = 0.010205 C = 0.009189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.554333 B = 2743.129600 C = 3046.469705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.337 6.337 3 C 0.112 3.888 4 C -0.226 4.226 5 C -0.108 4.108 6 C -0.138 4.138 7 C -0.023 4.023 8 C -0.170 4.170 9 C -0.050 4.050 10 C -0.110 4.110 11 C 0.065 3.935 12 H 0.005 0.995 13 C -0.525 4.525 14 H 0.058 0.942 15 C 0.017 3.983 16 N -0.897 5.897 17 Si 0.953 3.047 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.273 1.273 21 H 0.062 0.938 22 H 0.120 0.880 23 H 0.056 0.944 24 H 0.150 0.850 25 H 0.136 0.864 26 H 0.128 0.872 27 H 0.061 0.939 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.408 -5.853 -2.533 10.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.252 6.252 3 C 0.068 3.932 4 C -0.244 4.244 5 C -0.126 4.126 6 C -0.157 4.157 7 C -0.024 4.024 8 C -0.171 4.171 9 C -0.087 4.087 10 C -0.147 4.147 11 C 0.047 3.953 12 H 0.023 0.977 13 C -0.562 4.562 14 H 0.076 0.924 15 C -0.183 4.183 16 N -0.535 5.535 17 Si 0.779 3.221 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.198 1.198 21 H 0.080 0.920 22 H 0.138 0.862 23 H 0.075 0.925 24 H 0.167 0.833 25 H 0.153 0.847 26 H 0.146 0.854 27 H 0.080 0.920 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.373 -5.866 -2.509 10.527 hybrid contribution 0.181 0.777 1.026 1.300 sum -8.192 -5.089 -1.482 9.757 Atomic orbital electron populations 1.23263 0.77145 1.05172 1.01812 1.86002 1.22959 1.26882 1.89341 1.18630 0.90538 0.84823 0.99244 1.21161 1.00205 0.91586 1.11485 1.21108 0.94116 0.97673 0.99720 1.21308 0.93318 0.99783 1.01294 1.21029 0.97563 0.91861 0.91922 1.20215 0.91267 0.97198 1.08374 1.20668 0.92125 0.95173 1.00725 1.22321 0.96922 0.95774 0.99688 1.18408 0.88342 0.92927 0.95638 0.97663 1.21364 1.35779 0.97549 1.01523 0.92418 1.25721 0.95340 0.96044 1.01230 1.69982 1.41734 1.03164 1.38623 0.85635 0.78444 0.77760 0.80292 1.19800 1.21090 1.19773 0.91962 0.86195 0.92508 0.83285 0.84652 0.85400 0.92035 0.90666 0.91616 0.91071 0.92972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 9.81 113.37 1.11 1.58 16 2 O -0.34 -11.68 10.44 -92.43 -0.97 -12.65 16 3 C 0.11 4.53 6.69 22.54 0.15 4.69 16 4 C -0.23 -8.31 9.03 22.34 0.20 -8.11 16 5 C -0.11 -4.37 10.04 22.23 0.22 -4.15 16 6 C -0.14 -6.78 8.79 22.32 0.20 -6.58 16 7 C -0.02 -1.17 5.13 -19.60 -0.10 -1.27 16 8 C -0.17 -7.75 6.11 -19.50 -0.12 -7.87 16 9 C -0.05 -2.05 6.70 30.52 0.20 -1.85 16 10 C -0.11 -4.66 6.59 31.51 0.21 -4.45 16 11 C 0.07 3.39 2.82 -11.61 -0.03 3.35 16 12 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 13 C -0.52 -29.16 8.53 25.60 0.22 -28.94 16 14 H 0.06 3.15 7.57 -2.91 -0.02 3.12 16 15 C 0.02 0.93 5.32 84.66 0.45 1.38 16 16 N -0.90 -50.56 9.66 21.45 0.21 -50.35 16 17 Si 0.95 43.90 29.54 68.60 2.03 45.92 16 18 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 19 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 20 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 21 H 0.06 1.25 7.66 -2.38 -0.02 1.23 16 22 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 23 H 0.06 1.21 7.66 -2.39 -0.02 1.19 16 24 H 0.15 4.23 6.29 -2.91 -0.02 4.22 16 25 H 0.14 4.58 8.06 -2.91 -0.02 4.56 16 26 H 0.13 6.76 6.01 -2.91 -0.02 6.74 16 27 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 28 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 29 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.07 2.88 7.74 -2.38 -0.02 2.86 16 31 H 0.26 14.01 8.31 -92.70 -0.77 13.24 16 Total: -1.00 -62.68 256.51 5.10 -57.59 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: 1.12 Total: 11.71 kcal Atomic # 6 Polarization: -54.94 SS G_CDS: 2.71 Total: -52.23 kcal Atomic # 7 Polarization: -50.56 SS G_CDS: 0.21 Total: -50.35 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: -0.97 Total: -12.65 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Total: -62.68 5.10 -57.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084347631.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.692 kcal (2) G-P(sol) polarization free energy of solvation -62.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds