Wall clock time and date at job start Mon Mar 30 2020 02:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42894 * 109.47093 * 2 1 4 4 C 1.35907 * 117.00038 * 179.97438 * 3 2 1 5 5 C 1.39057 * 119.94819 * 0.21201 * 4 3 2 6 6 C 1.38429 * 120.38641 * 180.25337 * 5 4 3 7 7 C 1.37769 * 120.27568 * 359.79087 * 6 5 4 8 8 C 1.40388 * 119.88814 * 359.97438 * 7 6 5 9 9 C 1.46324 * 120.19011 * 179.97438 * 8 7 6 10 10 C 1.38204 * 119.99990 * 0.02562 * 9 8 7 11 11 C 1.38809 * 119.99932 * 180.02562 * 10 9 8 12 12 H 1.07992 * 120.00061 * 359.97438 * 11 10 9 13 13 C 1.40659 * 119.99835 * 179.97438 * 11 10 9 14 14 N 1.30536 * 119.99853 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00155 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.46761 * 89.99702 * 15 13 11 17 17 H 1.48494 * 109.47503 * 209.99891 * 15 13 11 18 18 H 1.48499 * 109.46864 * 330.00545 * 15 13 11 19 19 C 1.38204 * 119.94767 * 179.97438 * 4 3 2 20 20 H 1.08987 * 109.47482 * 59.99929 * 1 2 3 21 21 H 1.09008 * 109.47059 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46942 * 299.99181 * 1 2 3 23 23 H 1.09002 * 109.46890 * 239.99862 * 2 1 3 24 24 H 1.09001 * 109.47124 * 120.00464 * 2 1 3 25 25 H 1.08003 * 119.80636 * 0.02562 * 5 4 3 26 26 H 1.07998 * 119.86202 * 179.76585 * 6 5 4 27 27 H 1.08000 * 120.05740 * 179.97438 * 7 6 5 28 28 H 1.07992 * 120.00529 * 180.02562 * 9 8 7 29 29 H 1.08002 * 120.00022 * 359.97438 * 10 9 8 30 30 H 0.97003 * 120.00153 * 179.97438 * 14 13 11 31 31 H 1.08002 * 120.14133 * 0.02562 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3536 1.5253 0.0005 5 6 4.1997 0.4218 -0.0034 6 6 5.5734 0.5926 0.0024 7 6 6.1158 1.8591 0.0078 8 6 5.2724 2.9813 0.0069 9 6 5.8414 4.3294 0.0131 10 6 7.2128 4.5006 0.0195 11 6 7.7525 5.7794 0.0259 12 1 7.1008 6.6406 0.0256 13 6 9.1482 5.9537 0.0329 14 7 9.9359 4.9127 0.0338 15 14 9.8747 7.6746 0.0409 16 1 10.0605 8.1268 1.4431 17 1 11.1874 7.6611 -0.6530 18 1 8.9533 8.6040 -0.6608 19 6 3.8807 2.8029 0.0000 20 1 -0.3634 0.5138 -0.8898 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8901 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 3.7827 -0.5745 -0.0073 26 1 6.2227 -0.2704 0.0031 27 1 7.1881 1.9883 0.0127 28 1 5.1898 5.1906 0.0128 29 1 7.8645 3.6394 0.0202 30 1 10.8984 5.0328 0.0382 31 1 3.2241 3.6604 -0.0004 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084450500.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:53 Heat of formation + Delta-G solvation = -31.894047 kcal Electronic energy + Delta-G solvation = -13435.511792 eV Core-core repulsion = 11067.231381 eV Total energy + Delta-G solvation = -2368.280411 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.20844 -36.73564 -34.62867 -32.03444 -31.54818 -29.42069 -28.35000 -25.23820 -23.36674 -21.56326 -21.05594 -18.95742 -17.22947 -16.76694 -15.70007 -15.31592 -15.23343 -14.54420 -13.81449 -12.98407 -12.92815 -12.88040 -12.53420 -12.31086 -11.70926 -11.63257 -11.42534 -11.25242 -10.98645 -10.72181 -10.38009 -10.23679 -9.92211 -9.84194 -9.42808 -8.77506 -7.50588 -7.27460 -7.12104 -4.49788 2.13931 2.50147 2.82423 2.87086 2.92690 3.63943 3.66581 3.75624 4.76649 5.06650 5.16583 5.38948 5.39640 5.60232 5.72601 5.88432 5.88867 6.04560 6.30530 6.44724 6.49804 6.66721 6.75078 6.95964 7.15463 7.28293 7.45998 7.56781 7.72786 7.85678 8.10564 8.30770 8.32199 8.72464 8.84395 9.71567 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.074263 B = 0.004865 C = 0.004581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 376.949568 B = 5754.467356 C = 6110.956483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.058 3.942 3 O -0.326 6.326 4 C 0.143 3.857 5 C -0.296 4.296 6 C -0.063 4.063 7 C -0.217 4.217 8 C 0.092 3.908 9 C -0.407 4.407 10 C 0.080 3.920 11 C -0.414 4.414 12 H 0.083 0.917 13 C 0.067 3.933 14 N -0.777 5.777 15 Si 0.926 3.074 16 H -0.262 1.262 17 H -0.272 1.272 18 H -0.255 1.255 19 C -0.223 4.223 20 H 0.063 0.937 21 H 0.072 0.928 22 H 0.063 0.937 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.104 0.896 26 H 0.103 0.897 27 H 0.114 0.886 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.294 0.706 31 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.064 -5.024 -0.009 7.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.017 4.017 3 O -0.241 6.241 4 C 0.099 3.901 5 C -0.315 4.315 6 C -0.081 4.081 7 C -0.236 4.236 8 C 0.091 3.909 9 C -0.428 4.428 10 C 0.059 3.941 11 C -0.441 4.441 12 H 0.101 0.899 13 C -0.156 4.156 14 N -0.399 5.399 15 Si 0.748 3.252 16 H -0.187 1.187 17 H -0.197 1.197 18 H -0.179 1.179 19 C -0.242 4.242 20 H 0.082 0.918 21 H 0.090 0.910 22 H 0.082 0.918 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.122 0.878 26 H 0.121 0.879 27 H 0.132 0.868 28 H 0.103 0.897 29 H 0.112 0.888 30 H 0.105 0.895 31 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -5.936 -4.962 -0.011 7.737 hybrid contribution 0.521 0.340 0.011 0.623 sum -5.415 -4.621 0.000 7.119 Atomic orbital electron populations 1.21762 0.93622 1.02173 1.03204 1.22574 0.94935 0.83298 1.00940 1.85996 1.20697 1.27933 1.89485 1.18787 0.80663 0.94392 0.96255 1.20655 0.94281 0.96278 1.20273 1.20549 0.93777 0.96588 0.97177 1.21151 0.99408 0.91848 1.11183 1.18831 0.90587 0.93918 0.87526 1.21053 0.94106 0.91734 1.35946 1.20779 0.93208 0.96049 0.84069 1.19900 0.91153 0.95607 1.37392 0.89891 1.26545 0.97943 1.00163 0.90976 1.69480 1.06628 1.32871 1.30873 0.86003 0.78728 0.80548 0.79873 1.18710 1.19653 1.17853 1.20252 0.94641 0.93394 1.15881 0.91795 0.90963 0.91789 0.92656 0.92655 0.87781 0.87861 0.86784 0.89665 0.88754 0.89527 0.87120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 10.28 37.16 0.38 -1.23 16 2 C 0.06 0.82 5.46 37.16 0.20 1.02 16 3 O -0.33 -6.15 10.13 -19.45 -0.20 -6.35 16 4 C 0.14 3.03 6.68 -39.29 -0.26 2.77 16 5 C -0.30 -5.87 9.04 -39.21 -0.35 -6.23 16 6 C -0.06 -1.28 10.02 -39.68 -0.40 -1.68 16 7 C -0.22 -5.03 9.43 -38.94 -0.37 -5.39 16 8 C 0.09 2.26 5.87 -105.06 -0.62 1.65 16 9 C -0.41 -10.54 9.68 -36.34 -0.35 -10.89 16 10 C 0.08 2.11 8.80 -39.38 -0.35 1.76 16 11 C -0.41 -10.49 9.03 -38.46 -0.35 -10.84 16 12 H 0.08 2.03 7.86 -52.49 -0.41 1.62 16 13 C 0.07 1.57 5.51 -17.19 -0.09 1.48 16 14 N -0.78 -18.59 12.85 55.59 0.71 -17.87 16 15 Si 0.93 17.13 29.57 -169.99 -5.03 12.10 16 16 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 17 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 18 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 19 C -0.22 -5.16 9.75 -38.82 -0.38 -5.54 16 20 H 0.06 0.68 8.14 -51.94 -0.42 0.26 16 21 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 22 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.06 0.74 7.65 -51.93 -0.40 0.34 16 24 H 0.06 0.74 7.66 -51.93 -0.40 0.34 16 25 H 0.10 1.76 6.27 -52.48 -0.33 1.43 16 26 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 27 H 0.11 2.64 6.17 -52.49 -0.32 2.31 16 28 H 0.09 2.19 8.06 -52.49 -0.42 1.77 16 29 H 0.09 2.52 5.47 -52.49 -0.29 2.24 16 30 H 0.29 6.22 8.29 -40.82 -0.34 5.89 16 31 H 0.11 2.48 8.06 -52.49 -0.42 2.06 16 LS Contribution 271.37 15.07 4.09 4.09 Total: -1.00 -27.06 271.37 -7.17 -34.23 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -3.82 Total: 6.92 kcal Atomic # 6 Polarization: -30.19 SS G_CDS: -2.93 Total: -33.12 kcal Atomic # 7 Polarization: -18.59 SS G_CDS: 0.71 Total: -17.87 kcal Atomic # 8 Polarization: -6.15 SS G_CDS: -0.20 Total: -6.35 kcal Atomic # 14 Polarization: 17.13 SS G_CDS: -5.03 Total: 12.10 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -27.06 -7.17 -34.23 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084450500.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.333 kcal (2) G-P(sol) polarization free energy of solvation -27.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds