Wall clock time and date at job start Mon Mar 30 2020 02:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.47048 * 299.99904 * 9 7 2 11 11 N 1.46899 * 109.46967 * 60.00185 * 9 7 2 12 12 C 1.50701 * 109.46789 * 180.02562 * 9 7 2 13 13 C 1.38301 * 120.08421 * 279.72500 * 12 9 7 14 14 C 1.37823 * 120.23225 * 179.70776 * 13 12 9 15 15 C 1.39676 * 120.28244 * 0.59346 * 14 13 12 16 16 C 1.38603 * 119.02276 * 359.68383 * 15 14 13 17 17 C 1.38161 * 120.47598 * 0.02562 * 16 15 14 18 18 C 1.51220 * 108.53393 * 180.02562 * 16 15 14 19 19 C 1.53746 * 104.54022 * 0.02562 * 18 16 15 20 20 N 1.39571 * 129.32228 * 179.68926 * 15 14 13 21 21 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 22 22 H 1.00902 * 110.99647 * 60.00247 * 11 9 7 23 23 H 1.00897 * 110.99501 * 183.95535 * 11 9 7 24 24 H 1.08008 * 119.88262 * 359.97438 * 13 12 9 25 25 H 1.08005 * 119.86312 * 180.27739 * 14 13 12 26 26 H 1.08006 * 119.92643 * 180.02562 * 17 16 15 27 27 H 1.09001 * 110.42213 * 118.76640 * 18 16 15 28 28 H 1.09005 * 110.42323 * 241.23591 * 18 16 15 29 29 H 1.09007 * 110.30189 * 241.07353 * 19 18 16 30 30 H 1.09005 * 110.38333 * 118.96985 * 19 18 16 31 31 H 0.97000 * 124.95979 * 0.02562 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6248 -2.5571 0.8897 11 7 0.4061 -2.5768 -1.1997 12 6 2.2305 -3.6445 -0.0005 13 6 2.8347 -4.0401 -1.1800 14 6 3.7354 -5.0832 -1.1825 15 6 4.0359 -5.7572 0.0034 16 6 3.4205 -5.3565 1.1790 17 6 2.5228 -4.3063 1.1773 18 6 3.9135 -6.2383 2.3043 19 6 4.8993 -7.2076 1.6316 20 7 4.9032 -6.8298 0.2157 21 1 -0.4849 -0.8401 0.0004 22 1 0.9639 -2.5252 -2.0389 23 1 -0.1578 -3.4134 -1.1911 24 1 2.6031 -3.5268 -2.1017 25 1 4.2071 -5.3843 -2.1063 26 1 2.0488 -4.0012 2.0986 27 1 4.4238 -5.6410 3.0599 28 1 3.0834 -6.7873 2.7489 29 1 4.5566 -8.2359 1.7468 30 1 5.8960 -7.0918 2.0576 31 1 5.4325 -7.2614 -0.4731 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104491511.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:13 Heat of formation + Delta-G solvation = 27.885562 kcal Electronic energy + Delta-G solvation = -14245.405975 eV Core-core repulsion = 11912.010553 eV Total energy + Delta-G solvation = -2333.395422 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.88436 -36.73126 -33.90673 -31.60428 -31.10252 -28.44643 -28.26720 -25.29060 -22.60362 -22.15519 -21.43493 -19.52633 -17.11881 -16.63564 -15.43783 -15.41874 -14.85924 -14.10930 -13.62848 -13.57265 -13.16934 -12.58198 -12.34065 -12.01262 -11.91448 -11.85653 -11.71403 -11.03329 -10.64964 -10.39941 -10.05915 -9.99337 -9.64440 -8.53040 -8.25477 -8.18518 -7.42801 -6.76910 -6.08594 -3.91368 1.97056 2.21569 3.51932 3.55773 3.63748 3.71618 4.39145 4.68448 4.82436 4.95953 5.15929 5.44650 5.54092 5.58255 5.68785 5.88284 5.99001 6.00062 6.15170 6.25466 6.30617 6.57120 6.84707 7.04898 7.10478 7.17609 7.57297 7.71366 8.07194 8.11432 8.41109 8.76591 8.87201 9.15416 9.91911 11.30260 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.043680 B = 0.007293 C = 0.007067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.869791 B = 3838.119311 C = 3961.060700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.036 3.964 3 Si 1.065 2.935 4 H -0.290 1.290 5 H -0.286 1.286 6 H -0.291 1.291 7 C -0.605 4.605 8 H 0.045 0.955 9 C 0.243 3.757 10 H 0.034 0.966 11 N -0.830 5.830 12 C -0.110 4.110 13 C -0.078 4.078 14 C -0.179 4.179 15 C 0.165 3.835 16 C -0.174 4.174 17 C -0.066 4.066 18 C -0.082 4.082 19 C 0.124 3.876 20 N -0.757 5.757 21 H 0.290 0.710 22 H 0.324 0.676 23 H 0.301 0.699 24 H 0.117 0.883 25 H 0.107 0.893 26 H 0.114 0.886 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.877 -13.075 1.437 15.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.173 4.173 3 Si 0.895 3.105 4 H -0.217 1.217 5 H -0.212 1.212 6 H -0.218 1.218 7 C -0.644 4.644 8 H 0.064 0.936 9 C 0.134 3.866 10 H 0.052 0.948 11 N -0.357 5.357 12 C -0.114 4.114 13 C -0.097 4.097 14 C -0.202 4.202 15 C 0.065 3.935 16 C -0.179 4.179 17 C -0.085 4.085 18 C -0.119 4.119 19 C -0.001 4.001 20 N -0.392 5.392 21 H 0.102 0.898 22 H 0.138 0.862 23 H 0.111 0.889 24 H 0.135 0.865 25 H 0.125 0.875 26 H 0.132 0.868 27 H 0.097 0.903 28 H 0.095 0.905 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 7.355 -10.830 1.821 13.218 hybrid contribution 1.200 -2.779 -0.537 3.074 sum 8.555 -13.609 1.284 16.126 Atomic orbital electron populations 1.70519 1.06822 1.32762 1.42778 1.25606 0.96638 1.01766 0.93292 0.83628 0.74715 0.75669 0.76504 1.21730 1.21178 1.21782 1.21746 0.93417 0.90580 1.58627 0.93626 1.18232 0.87964 0.90560 0.89886 0.94813 1.59478 1.28653 1.42193 1.05384 1.21163 1.00392 0.97829 0.92009 1.20595 0.95495 0.95160 0.98434 1.20226 1.04181 1.00349 0.95410 1.18182 0.91668 0.89277 0.94389 1.19795 1.03146 1.00921 0.94038 1.20276 0.96479 0.93549 0.98211 1.20959 0.98150 0.95995 0.96794 1.21646 0.98887 0.97836 0.81719 1.44527 1.49468 1.36621 1.08584 0.89777 0.86246 0.88876 0.86497 0.87520 0.86823 0.90333 0.90451 0.92399 0.92335 0.75834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.36 13.51 55.43 0.75 -26.61 16 2 C 0.04 1.05 5.39 -17.82 -0.10 0.96 16 3 Si 1.07 25.82 29.90 -169.99 -5.08 20.74 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.60 -17.18 8.71 -34.44 -0.30 -17.48 16 8 H 0.05 1.33 7.74 -52.48 -0.41 0.92 16 9 C 0.24 6.09 2.47 -70.02 -0.17 5.92 16 10 H 0.03 0.92 7.87 -51.93 -0.41 0.51 16 11 N -0.83 -19.35 7.62 -6.65 -0.05 -19.40 16 12 C -0.11 -2.41 4.89 -104.60 -0.51 -2.92 16 13 C -0.08 -1.55 9.27 -39.71 -0.37 -1.92 16 14 C -0.18 -3.16 10.07 -39.20 -0.39 -3.55 16 15 C 0.17 2.80 7.03 -83.66 -0.59 2.21 16 16 C -0.17 -3.06 6.23 -104.26 -0.65 -3.71 16 17 C -0.07 -1.32 9.66 -39.61 -0.38 -1.71 16 18 C -0.08 -1.08 6.94 -27.24 -0.19 -1.27 16 19 C 0.12 1.40 7.96 -3.63 -0.03 1.37 16 20 N -0.76 -10.03 6.53 -58.11 -0.38 -10.41 16 21 H 0.29 8.86 6.39 -40.82 -0.26 8.59 16 22 H 0.32 7.29 7.34 -39.29 -0.29 7.00 16 23 H 0.30 6.23 9.06 -39.29 -0.36 5.88 16 24 H 0.12 2.26 6.66 -52.48 -0.35 1.91 16 25 H 0.11 1.62 8.06 -52.48 -0.42 1.19 16 26 H 0.11 2.21 8.04 -52.48 -0.42 1.78 16 27 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.41 4.37 8.96 -40.82 -0.37 4.01 16 LS Contribution 260.19 15.07 3.92 3.92 Total: -1.00 -31.78 260.19 -8.29 -40.07 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -3.77 Total: 13.80 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: -3.68 Total: -22.10 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: 0.32 Total: -56.43 kcal Atomic # 14 Polarization: 25.82 SS G_CDS: -5.08 Total: 20.74 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -31.78 -8.29 -40.07 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104491511.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.956 kcal (2) G-P(sol) polarization free energy of solvation -31.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds