Wall clock time and date at job start Mon Mar 30 2020 02:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86808 * 120.00054 * 2 1 4 4 H 1.48499 * 109.46933 * 274.40786 * 3 2 1 5 5 H 1.48502 * 109.46947 * 34.40761 * 3 2 1 6 6 H 1.48500 * 109.47072 * 154.40929 * 3 2 1 7 7 C 1.38809 * 120.00073 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00062 * 161.18873 * 7 2 1 9 9 N 1.36935 * 120.00110 * 341.19416 * 7 2 1 10 10 C 1.47229 * 121.32820 * 333.52200 * 9 7 2 11 11 C 1.52782 * 107.93049 * 115.91404 * 10 9 7 12 12 C 1.50611 * 110.86577 * 47.52779 * 11 10 9 13 13 C 1.39044 * 117.60130 * 160.06248 * 12 11 10 14 14 C 1.37951 * 120.73926 * 178.77645 * 13 12 11 15 15 C 1.38127 * 119.90942 * 0.02562 * 14 13 12 16 16 C 1.38643 * 119.63786 * 0.26830 * 15 14 13 17 17 N 1.39676 * 119.82896 * 179.97438 * 16 15 14 18 18 C 1.37539 * 122.82982 * 339.36867 * 12 11 10 19 19 C 1.46684 * 121.33158 * 153.49257 * 9 7 2 20 20 H 0.97007 * 120.00256 * 0.02562 * 1 2 3 21 21 H 1.09003 * 109.76741 * 235.51966 * 10 9 7 22 22 H 1.08997 * 109.77119 * 356.30269 * 10 9 7 23 23 H 1.08994 * 109.19800 * 287.16897 * 11 10 9 24 24 H 1.09002 * 109.19672 * 167.88202 * 11 10 9 25 25 H 1.07993 * 119.62764 * 358.75125 * 13 12 11 26 26 H 1.08000 * 120.04471 * 180.02562 * 14 13 12 27 27 H 1.08007 * 120.18228 * 180.29610 * 15 14 13 28 28 H 0.96994 * 120.00115 * 180.02562 * 17 16 15 29 29 H 0.97007 * 119.99963 * 0.02789 * 17 16 15 30 30 H 1.09000 * 109.43189 * 104.40619 * 19 9 7 31 31 H 1.08992 * 109.43377 * 344.54226 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4045 2.1002 -1.3959 5 1 1.4973 2.6240 0.7912 6 1 3.5912 1.4151 0.6047 7 6 2.0102 -1.2021 0.0005 8 1 3.0470 -1.2272 -0.3011 9 7 1.3804 -2.3562 0.3833 10 6 0.2359 -2.3328 1.3093 11 6 -0.9892 -2.8481 0.5559 12 6 -0.6667 -4.1171 -0.1885 13 6 -1.7293 -4.9317 -0.5637 14 6 -1.5099 -6.0963 -1.2698 15 6 -0.2225 -6.4630 -1.6104 16 6 0.8419 -5.6583 -1.2341 17 7 2.1454 -6.0256 -1.5760 18 6 0.6179 -4.4836 -0.5159 19 6 1.8186 -3.6650 -0.1132 20 1 -0.4851 0.8401 -0.0004 21 1 0.4406 -2.9768 2.1646 22 1 0.0576 -1.3127 1.6493 23 1 -1.3184 -2.0897 -0.1544 24 1 -1.7914 -3.0440 1.2675 25 1 -2.7376 -4.6497 -0.2989 26 1 -2.3435 -6.7204 -1.5558 27 1 -0.0460 -7.3714 -2.1674 28 1 2.8920 -5.4647 -1.3136 29 1 2.3041 -6.8417 -2.0759 30 1 2.3660 -4.1862 0.6722 31 1 2.4690 -3.5261 -0.9767 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125668197.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:31 Heat of formation + Delta-G solvation = 26.012805 kcal Electronic energy + Delta-G solvation = -14703.029855 eV Core-core repulsion = 12369.553224 eV Total energy + Delta-G solvation = -2333.476631 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.73926 -37.61244 -35.65676 -33.98987 -32.09178 -31.02635 -28.97677 -27.18618 -24.58411 -23.84175 -22.26949 -20.62636 -18.74985 -17.65147 -17.20694 -16.92893 -16.10661 -15.52047 -15.44977 -15.18477 -14.60261 -14.28858 -13.99195 -13.39135 -13.29800 -12.89876 -12.79846 -12.59202 -12.39744 -12.12784 -11.89075 -11.69473 -11.27908 -11.09002 -10.49294 -9.27157 -8.68947 -8.22327 -7.85858 -5.30991 0.68729 0.84841 1.47211 1.49142 1.59164 2.51657 3.07896 3.14230 3.28225 3.68514 4.12011 4.15844 4.35544 4.52232 4.67979 4.75611 4.80220 4.91367 4.96816 5.01209 5.19528 5.25102 5.52541 5.55966 5.60863 5.76114 5.84598 6.08433 6.18391 6.39353 6.71035 7.10961 7.14396 7.82275 8.39889 9.19597 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.042264 B = 0.009215 C = 0.008092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.347181 B = 3037.639922 C = 3459.175077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.045 4.045 3 Si 0.968 3.032 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.272 1.272 7 C -0.269 4.269 8 H 0.066 0.934 9 N -0.608 5.608 10 C 0.165 3.835 11 C -0.083 4.083 12 C -0.034 4.034 13 C -0.202 4.202 14 C -0.076 4.076 15 C -0.216 4.216 16 C 0.210 3.790 17 N -0.869 5.869 18 C -0.191 4.191 19 C 0.191 3.809 20 H 0.250 0.750 21 H 0.013 0.987 22 H 0.066 0.934 23 H 0.064 0.936 24 H 0.066 0.934 25 H 0.121 0.879 26 H 0.147 0.853 27 H 0.144 0.856 28 H 0.399 0.601 29 H 0.408 0.592 30 H 0.031 0.969 31 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.031 -11.724 -1.854 11.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.241 4.241 3 Si 0.796 3.204 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.197 1.197 7 C -0.399 4.399 8 H 0.084 0.916 9 N -0.331 5.331 10 C 0.040 3.960 11 C -0.122 4.122 12 C -0.035 4.035 13 C -0.222 4.222 14 C -0.094 4.094 15 C -0.239 4.239 16 C 0.104 3.896 17 N -0.410 5.410 18 C -0.196 4.196 19 C 0.066 3.934 20 H 0.059 0.941 21 H 0.031 0.969 22 H 0.084 0.916 23 H 0.082 0.918 24 H 0.084 0.916 25 H 0.139 0.861 26 H 0.165 0.835 27 H 0.162 0.838 28 H 0.228 0.772 29 H 0.238 0.762 30 H 0.049 0.951 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.063 -11.569 -1.844 11.715 hybrid contribution 0.549 1.106 -0.126 1.241 sum 0.486 -10.463 -1.969 10.658 Atomic orbital electron populations 1.70147 1.06361 1.25689 1.54233 1.25746 0.96120 1.01249 1.01034 0.85274 0.78223 0.79681 0.77257 1.21469 1.21642 1.19652 1.19422 0.93444 0.86061 1.40997 0.91600 1.44271 1.36599 1.01569 1.50661 1.20695 0.86319 0.99198 0.89832 1.20725 0.98754 0.93873 0.98859 1.19662 0.92730 0.95139 0.95941 1.21107 0.98125 0.97472 1.05470 1.21025 0.97069 0.95562 0.95794 1.20714 0.91727 1.02438 1.08979 1.17863 0.86827 0.92050 0.92830 1.42419 1.03970 1.29765 1.64798 1.19921 0.96112 0.97593 1.06016 1.19684 0.92605 0.85422 0.95733 0.94059 0.96909 0.91608 0.91781 0.91596 0.86143 0.83523 0.83790 0.77192 0.76194 0.95131 0.92856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.59 10.16 21.65 0.22 -53.37 16 2 C -0.05 -2.53 4.93 84.86 0.42 -2.11 16 3 Si 0.97 45.04 29.59 68.60 2.03 47.07 16 4 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 5 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 6 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 7 C -0.27 -15.17 9.67 84.03 0.81 -14.36 16 8 H 0.07 3.61 7.90 -2.91 -0.02 3.58 16 9 N -0.61 -32.00 2.96 -704.27 -2.09 -34.08 16 10 C 0.17 8.34 5.59 86.17 0.48 8.82 16 11 C -0.08 -3.87 5.78 29.75 0.17 -3.70 16 12 C -0.03 -1.44 5.76 -19.86 -0.11 -1.56 16 13 C -0.20 -7.16 9.58 22.40 0.21 -6.95 16 14 C -0.08 -2.24 10.04 22.18 0.22 -2.01 16 15 C -0.22 -6.22 9.89 22.34 0.22 -6.00 16 16 C 0.21 6.99 6.72 38.29 0.26 7.25 16 17 N -0.87 -22.15 8.98 -51.17 -0.46 -22.61 16 18 C -0.19 -7.89 5.84 -19.70 -0.11 -8.01 16 19 C 0.19 8.47 5.32 85.63 0.46 8.92 16 20 H 0.25 14.11 8.31 -92.70 -0.77 13.34 16 21 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 22 H 0.07 3.66 5.92 -2.39 -0.01 3.65 16 23 H 0.06 3.41 7.16 -2.39 -0.02 3.40 16 24 H 0.07 2.69 8.10 -2.39 -0.02 2.67 16 25 H 0.12 3.86 8.05 -2.91 -0.02 3.84 16 26 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 27 H 0.14 3.11 8.06 -2.91 -0.02 3.09 16 28 H 0.40 10.15 7.01 -92.71 -0.65 9.50 16 29 H 0.41 7.56 8.83 -92.70 -0.82 6.74 16 30 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.05 2.31 7.19 -2.39 -0.02 2.29 16 Total: -1.00 -64.72 253.00 2.41 -62.31 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: -0.32 Total: 20.37 kcal Atomic # 6 Polarization: -22.72 SS G_CDS: 3.03 Total: -19.70 kcal Atomic # 7 Polarization: -107.73 SS G_CDS: -2.33 Total: -110.05 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -64.72 2.41 -62.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125668197.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.322 kcal (2) G-P(sol) polarization free energy of solvation -64.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds