Wall clock time and date at job start Mon Mar 30 2020 02:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30896 * 1 3 3 Si 1.86799 * 120.00361 * 2 1 4 4 H 1.48501 * 109.47118 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47555 * 119.99431 * 3 2 1 6 6 H 1.48495 * 109.47047 * 239.99888 * 3 2 1 7 7 C 1.39873 * 119.99600 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99594 * 154.35246 * 7 2 1 9 9 C 1.41196 * 120.00277 * 334.35744 * 7 2 1 10 10 C 1.41326 * 120.56761 * 154.94790 * 9 7 2 11 11 C 1.36567 * 118.40171 * 179.97438 * 10 9 7 12 12 C 1.39708 * 119.49636 * 0.02562 * 11 10 9 13 13 N 1.38371 * 119.42900 * 179.97438 * 12 11 10 14 14 C 1.48536 * 110.99978 * 62.60112 * 13 12 11 15 15 C 1.54936 * 103.22345 * 159.71699 * 14 13 12 16 16 C 1.54595 * 102.92573 * 322.58736 * 15 14 13 17 17 C 1.47898 * 110.99954 * 179.97438 * 13 12 11 18 18 N 1.32743 * 121.13948 * 359.97438 * 12 11 10 19 19 C 1.31488 * 121.72765 * 359.72037 * 18 12 11 20 20 H 0.96993 * 120.00665 * 174.35072 * 1 2 3 21 21 H 1.08000 * 120.80013 * 359.95176 * 10 9 7 22 22 H 1.08008 * 120.24789 * 179.97438 * 11 10 9 23 23 H 1.08991 * 110.66751 * 278.15356 * 14 13 12 24 24 H 1.09001 * 110.66688 * 41.28621 * 14 13 12 25 25 H 1.09003 * 110.72483 * 204.22643 * 15 14 13 26 26 H 1.08999 * 110.87324 * 81.02136 * 15 14 13 27 27 H 1.08996 * 110.30873 * 263.04301 * 16 15 14 28 28 H 1.08996 * 110.30692 * 140.86893 * 16 15 14 29 29 H 1.09004 * 109.91379 * 333.51084 * 17 13 12 30 30 H 1.08998 * 109.91863 * 94.80110 * 17 13 12 31 31 H 1.08002 * 119.81448 * 180.26809 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 1.2781 2.7465 -0.0006 5 1 3.0967 1.6964 1.2125 6 1 3.0968 1.6962 -1.2125 7 6 2.0082 -1.2114 0.0005 8 1 3.0084 -1.2576 -0.4043 9 6 1.4065 -2.3737 0.5302 10 6 1.8148 -3.6555 0.0971 11 6 1.2033 -4.7497 0.6392 12 6 0.2011 -4.5738 1.5966 13 7 -0.4179 -5.6834 2.1446 14 6 0.5557 -6.5229 2.8886 15 6 -0.3454 -7.3606 3.8302 16 6 -1.4476 -6.3562 4.2380 17 6 -1.4433 -5.2842 3.1328 18 7 -0.1674 -3.3607 1.9896 19 6 0.3940 -2.2758 1.5029 20 1 -0.4851 -0.8358 -0.0827 21 1 2.5914 -3.7671 -0.6451 22 1 1.4917 -5.7434 0.3295 23 1 1.1058 -7.1705 2.2060 24 1 1.2398 -5.8998 3.4647 25 1 0.2145 -7.6945 4.7038 26 1 -0.7752 -8.2112 3.3012 27 1 -1.2114 -5.9061 5.2022 28 1 -2.4165 -6.8537 4.2789 29 1 -1.1905 -4.3130 3.5584 30 1 -2.4220 -5.2399 2.6552 31 1 0.0730 -1.3041 1.8480 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000165248566.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:52 Heat of formation + Delta-G solvation = 12.641276 kcal Electronic energy + Delta-G solvation = -14329.603113 eV Core-core repulsion = 11995.546649 eV Total energy + Delta-G solvation = -2334.056464 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.18590 -39.03496 -36.09867 -33.27875 -32.92839 -30.15256 -29.73320 -26.76010 -24.16074 -23.66317 -21.90308 -21.35970 -19.97140 -18.23169 -17.34854 -16.47999 -16.37301 -15.61964 -15.35764 -14.99019 -14.65687 -14.17221 -13.87421 -13.64813 -13.23230 -12.97569 -12.84599 -12.74243 -12.20340 -12.03427 -11.99821 -11.76139 -11.42271 -11.05793 -10.56896 -10.47874 -9.91683 -9.31609 -9.07706 -6.48321 0.62005 0.79561 1.51421 1.62628 1.81042 2.31112 2.59066 3.02599 3.45568 3.69854 3.79508 4.07361 4.13765 4.38389 4.43876 4.47570 4.59873 4.65492 4.85026 4.91525 4.96979 5.05311 5.13429 5.14992 5.22550 5.32805 5.50010 5.56261 5.80623 5.91581 6.02397 6.33600 6.65021 6.76713 7.53078 7.93088 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.061002 B = 0.006956 C = 0.006548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.888871 B = 4024.323294 C = 4275.151087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.003 3.997 3 Si 1.121 2.879 4 H -0.272 1.272 5 H -0.262 1.262 6 H -0.253 1.253 7 C -0.536 4.536 8 H 0.083 0.917 9 C 0.012 3.988 10 C -0.185 4.185 11 C -0.124 4.124 12 C 0.142 3.858 13 N -0.460 5.460 14 C 0.036 3.964 15 C -0.111 4.111 16 C -0.124 4.124 17 C 0.034 3.966 18 N -0.498 5.498 19 C -0.023 4.023 20 H 0.281 0.719 21 H 0.123 0.877 22 H 0.135 0.865 23 H 0.092 0.908 24 H 0.028 0.972 25 H 0.094 0.906 26 H 0.087 0.913 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.046 0.954 30 H 0.063 0.937 31 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.627 -8.118 4.981 9.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.214 4.214 3 Si 0.937 3.063 4 H -0.197 1.197 5 H -0.187 1.187 6 H -0.177 1.177 7 C -0.564 4.564 8 H 0.101 0.899 9 C 0.007 3.993 10 C -0.212 4.212 11 C -0.145 4.145 12 C -0.088 4.088 13 N -0.180 5.180 14 C -0.090 4.090 15 C -0.149 4.149 16 C -0.162 4.162 17 C -0.094 4.094 18 N -0.210 5.210 19 C -0.184 4.184 20 H 0.093 0.907 21 H 0.141 0.859 22 H 0.153 0.847 23 H 0.110 0.890 24 H 0.046 0.954 25 H 0.112 0.888 26 H 0.106 0.894 27 H 0.089 0.911 28 H 0.108 0.892 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.462 -6.740 5.222 8.539 hybrid contribution 0.877 -1.070 -0.366 1.431 sum 1.339 -7.810 4.856 9.293 Atomic orbital electron populations 1.70622 1.09096 1.33061 1.30654 1.28616 0.95536 1.07791 0.89431 0.82963 0.74706 0.69316 0.79327 1.19680 1.18708 1.17715 1.20684 1.03603 0.94745 1.37390 0.89873 1.18840 0.93507 0.94597 0.92336 1.21277 1.04492 0.92110 1.03276 1.21070 0.96877 0.99270 0.97328 1.19563 0.99113 0.88399 1.01743 1.62101 1.11377 1.14533 1.30006 1.23405 0.94414 0.95281 0.95907 1.22491 0.95874 0.97520 0.98967 1.22413 1.00846 0.95797 0.97116 1.22743 0.95091 0.98884 0.92686 1.66929 1.28334 0.99115 1.26578 1.22299 1.01511 0.94719 0.99901 0.90743 0.85861 0.84721 0.88951 0.95372 0.88757 0.89391 0.91060 0.89191 0.93565 0.91899 0.86331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -44.30 12.33 21.82 0.27 -44.03 16 2 C 0.00 0.13 4.94 85.23 0.42 0.55 16 3 Si 1.12 42.08 30.00 68.60 2.06 44.14 16 4 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 5 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 6 H -0.25 -8.57 7.11 99.48 0.71 -7.86 16 7 C -0.54 -28.40 8.99 23.39 0.21 -28.19 16 8 H 0.08 4.19 7.96 -2.91 -0.02 4.16 16 9 C 0.01 0.66 5.31 -21.18 -0.11 0.54 16 10 C -0.19 -9.01 9.88 22.64 0.22 -8.79 16 11 C -0.12 -5.56 9.37 22.23 0.21 -5.35 16 12 C 0.14 6.69 6.21 133.31 0.83 7.52 16 13 N -0.46 -17.93 5.28 -689.17 -3.64 -21.57 16 14 C 0.04 1.12 6.02 86.65 0.52 1.64 16 15 C -0.11 -2.50 7.06 31.80 0.22 -2.28 16 16 C -0.12 -3.12 6.93 31.46 0.22 -2.91 16 17 C 0.03 1.22 6.33 86.44 0.55 1.77 16 18 N -0.50 -26.06 8.08 -191.20 -1.55 -27.61 16 19 C -0.02 -1.29 9.15 85.36 0.78 -0.51 16 20 H 0.28 16.23 6.70 -92.71 -0.62 15.61 16 21 H 0.12 5.42 8.06 -2.91 -0.02 5.39 16 22 H 0.13 5.09 8.00 -2.91 -0.02 5.07 16 23 H 0.09 2.54 8.10 -2.39 -0.02 2.52 16 24 H 0.03 0.95 7.99 -2.39 -0.02 0.93 16 25 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.05 1.94 6.47 -2.38 -0.02 1.93 16 30 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.12 6.85 6.49 -2.91 -0.02 6.83 16 Total: -1.00 -61.81 257.69 2.48 -59.33 By element: Atomic # 1 Polarization: 24.48 SS G_CDS: 1.26 Total: 25.74 kcal Atomic # 6 Polarization: -40.07 SS G_CDS: 4.07 Total: -36.00 kcal Atomic # 7 Polarization: -88.30 SS G_CDS: -4.91 Total: -93.21 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.06 Total: 44.14 kcal Total: -61.81 2.48 -59.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165248566.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.971 kcal (2) G-P(sol) polarization free energy of solvation -61.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds