Wall clock time and date at job start Mon Mar 30 2020 02:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30904 * 1 3 3 Si 1.86794 * 120.00112 * 2 1 4 4 H 1.48506 * 109.47171 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47230 * 299.99585 * 3 2 1 6 6 H 1.48504 * 109.47433 * 60.00154 * 3 2 1 7 7 C 1.39888 * 119.99638 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99572 * 163.96076 * 7 2 1 9 9 C 1.41021 * 120.00372 * 343.96912 * 7 2 1 10 10 C 1.40667 * 120.26653 * 333.64735 * 9 7 2 11 11 C 1.38004 * 119.76986 * 179.97438 * 10 9 7 12 12 N 1.39857 * 119.83764 * 179.97438 * 11 10 9 13 13 C 1.46505 * 119.99721 * 180.02562 * 12 11 10 14 14 C 1.52997 * 117.49545 * 223.62652 * 13 12 11 15 15 C 1.52999 * 117.49749 * 155.00352 * 13 12 11 16 16 C 1.39607 * 120.32060 * 359.74812 * 11 10 9 17 17 C 1.38046 * 120.54820 * 0.51239 * 16 11 10 18 18 C 1.38736 * 120.22365 * 359.48554 * 17 16 11 19 19 N 1.38863 * 120.16702 * 180.27765 * 18 17 16 20 20 H 0.96997 * 119.99760 * 0.02562 * 1 2 3 21 21 H 1.07995 * 120.11773 * 359.97438 * 10 9 7 22 22 H 0.96998 * 120.00453 * 0.02562 * 12 11 10 23 23 H 1.09000 * 115.55272 * 9.33409 * 13 12 11 24 24 H 1.09000 * 117.50236 * 359.97438 * 14 13 12 25 25 H 1.09000 * 117.50028 * 145.02332 * 14 13 12 26 26 H 1.08992 * 117.49946 * 214.98042 * 15 13 12 27 27 H 1.08999 * 117.49959 * 0.02562 * 15 13 12 28 28 H 1.08001 * 119.72354 * 180.24876 * 16 11 10 29 29 H 1.08005 * 119.89259 * 179.76823 * 17 16 11 30 30 H 0.97002 * 119.99800 * 0.02562 * 19 18 17 31 31 H 0.96998 * 119.99922 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.7031 1.3463 0.0006 5 1 1.8844 2.3963 -1.2125 6 1 1.8844 2.3964 1.2125 7 6 2.0084 -1.2115 0.0005 8 1 3.0569 -1.2298 -0.2579 9 6 1.3444 -2.4089 0.3383 10 6 0.2151 -2.3812 1.1765 11 6 -0.4271 -3.5591 1.5001 12 7 -1.5497 -3.5333 2.3338 13 6 -2.2339 -4.7817 2.6799 14 6 -3.7633 -4.7835 2.6402 15 6 -3.0330 -4.8111 3.9843 16 6 0.0356 -4.7757 0.9954 17 6 1.1457 -4.8188 0.1760 18 6 1.8087 -3.6484 -0.1638 19 7 2.9218 -3.6925 -0.9928 20 1 -0.4849 0.8400 -0.0004 21 1 -0.1481 -1.4415 1.5655 22 1 -1.8754 -2.6889 2.6828 23 1 -1.7213 -5.6966 2.3830 24 1 -4.2606 -3.8558 2.3569 25 1 -4.2573 -5.6998 2.3170 26 1 -3.0464 -5.7454 4.5454 27 1 -3.0500 -3.9015 4.5847 28 1 -0.4768 -5.6913 1.2516 29 1 1.4967 -5.7663 -0.2055 30 1 3.2375 -4.5431 -1.3361 31 1 3.3833 -2.8727 -1.2292 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000166373705.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:13 Heat of formation + Delta-G solvation = 49.289172 kcal Electronic energy + Delta-G solvation = -14113.424268 eV Core-core repulsion = 11780.956977 eV Total energy + Delta-G solvation = -2332.467292 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.18850 -36.87054 -33.80278 -33.43495 -30.66724 -29.42089 -26.18758 -24.77703 -22.08192 -21.95974 -20.58974 -19.57095 -17.21734 -16.13949 -15.71214 -15.32718 -14.80261 -14.66601 -13.88540 -12.81288 -12.54857 -12.34682 -12.20468 -11.83807 -11.42875 -11.30707 -11.23830 -10.99311 -10.94081 -10.36173 -10.15880 -9.80597 -9.46478 -9.30808 -9.06234 -7.67516 -7.23217 -6.61828 -5.54306 -4.06885 2.89240 3.13943 3.18249 3.29791 3.42207 4.03404 4.26022 4.31874 4.82050 5.19805 5.34644 5.38036 5.42608 5.85470 5.90154 6.02930 6.21265 6.35255 6.36483 6.64840 7.11140 7.14373 7.31604 7.46476 7.70379 7.86266 7.97757 8.11510 8.45176 8.72722 8.87659 8.92886 8.98959 9.25335 9.33234 10.37361 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.028907 B = 0.008771 C = 0.006969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.396430 B = 3191.516661 C = 4017.071953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.076 3.924 3 Si 0.902 3.098 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.275 1.275 7 C -0.464 4.464 8 H 0.072 0.928 9 C 0.095 3.905 10 C -0.198 4.198 11 C 0.175 3.825 12 N -0.730 5.730 13 C 0.116 3.884 14 C -0.213 4.213 15 C -0.208 4.208 16 C -0.254 4.254 17 C -0.152 4.152 18 C 0.086 3.914 19 N -0.888 5.888 20 H 0.274 0.726 21 H 0.117 0.883 22 H 0.390 0.610 23 H 0.124 0.876 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.374 0.626 31 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.070 -4.332 3.082 5.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.200 1.200 7 C -0.495 4.495 8 H 0.090 0.910 9 C 0.090 3.910 10 C -0.223 4.223 11 C 0.077 3.923 12 N -0.360 5.360 13 C 0.007 3.993 14 C -0.253 4.253 15 C -0.248 4.248 16 C -0.277 4.277 17 C -0.177 4.177 18 C -0.015 4.015 19 N -0.431 5.431 20 H 0.085 0.915 21 H 0.135 0.865 22 H 0.223 0.777 23 H 0.142 0.858 24 H 0.109 0.891 25 H 0.109 0.891 26 H 0.110 0.890 27 H 0.108 0.892 28 H 0.105 0.895 29 H 0.103 0.897 30 H 0.199 0.801 31 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -2.321 -4.304 3.098 5.789 hybrid contribution 0.276 1.090 -0.096 1.128 sum -2.045 -3.214 3.002 4.850 Atomic orbital electron populations 1.69890 1.07267 1.28298 1.37254 1.25759 0.94671 1.00722 0.92854 0.86377 0.80880 0.81747 0.78287 1.18705 1.20328 1.20037 1.19158 0.96895 0.91086 1.42336 0.91007 1.16973 0.92615 0.90346 0.91100 1.20478 1.01439 0.95019 1.05338 1.17504 0.87632 0.94312 0.92849 1.43813 1.31420 1.05290 1.55522 1.21298 0.89298 0.91090 0.97597 1.23438 0.97899 1.02836 1.01125 1.23343 1.07039 1.02750 0.91627 1.19652 1.02909 0.94474 1.10711 1.19711 0.98935 0.94702 1.04324 1.17868 0.92136 0.93898 0.97556 1.41809 1.33823 1.09198 1.58274 0.91495 0.86477 0.77700 0.85816 0.89144 0.89104 0.88962 0.89240 0.89479 0.89660 0.80078 0.78314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.07 10.97 55.55 0.61 -20.46 16 2 C 0.08 1.92 5.16 -17.33 -0.09 1.84 16 3 Si 0.90 19.01 29.59 -169.99 -5.03 13.98 16 4 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 6 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 7 C -0.46 -12.22 8.48 -37.91 -0.32 -12.55 16 8 H 0.07 1.80 6.71 -52.48 -0.35 1.45 16 9 C 0.09 2.54 5.57 -106.66 -0.59 1.94 16 10 C -0.20 -5.21 8.49 -38.75 -0.33 -5.54 16 11 C 0.17 4.14 6.64 -83.77 -0.56 3.59 16 12 N -0.73 -14.54 5.75 -52.17 -0.30 -14.84 16 13 C 0.12 1.92 6.32 -67.93 -0.43 1.49 16 14 C -0.21 -3.00 10.46 -26.73 -0.28 -3.28 16 15 C -0.21 -2.82 10.46 -26.73 -0.28 -3.10 16 16 C -0.25 -5.83 9.32 -39.14 -0.36 -6.19 16 17 C -0.15 -3.52 9.86 -39.47 -0.39 -3.91 16 18 C 0.09 2.11 6.79 -83.22 -0.56 1.54 16 19 N -0.89 -18.26 8.98 32.75 0.29 -17.97 16 20 H 0.27 6.63 8.30 -40.82 -0.34 6.29 16 21 H 0.12 3.19 6.23 -52.49 -0.33 2.86 16 22 H 0.39 7.45 8.83 -40.82 -0.36 7.09 16 23 H 0.12 2.03 5.88 -51.93 -0.31 1.73 16 24 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 25 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 26 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.09 1.79 5.86 -52.49 -0.31 1.48 16 29 H 0.09 1.74 8.06 -52.48 -0.42 1.32 16 30 H 0.37 6.49 8.83 -40.82 -0.36 6.13 16 31 H 0.39 7.84 7.06 -40.82 -0.29 7.55 16 LS Contribution 262.48 15.07 3.96 3.96 Total: -1.00 -28.17 262.48 -8.22 -36.38 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: -3.55 Total: 23.11 kcal Atomic # 6 Polarization: -19.96 SS G_CDS: -4.20 Total: -24.16 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: 0.60 Total: -53.27 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.03 Total: 13.98 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -28.17 -8.22 -36.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166373705.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.673 kcal (2) G-P(sol) polarization free energy of solvation -28.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds