Wall clock time and date at job start Mon Mar 30 2020 02:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30904 * 1 3 3 Si 1.86794 * 120.00112 * 2 1 4 4 H 1.48506 * 109.47171 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47230 * 299.99585 * 3 2 1 6 6 H 1.48504 * 109.47433 * 60.00154 * 3 2 1 7 7 C 1.39888 * 119.99638 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99572 * 163.96076 * 7 2 1 9 9 C 1.41021 * 120.00372 * 343.96912 * 7 2 1 10 10 C 1.40667 * 120.26653 * 333.64735 * 9 7 2 11 11 C 1.38004 * 119.76986 * 179.97438 * 10 9 7 12 12 N 1.39857 * 119.83764 * 179.97438 * 11 10 9 13 13 C 1.46505 * 119.99721 * 180.02562 * 12 11 10 14 14 C 1.52997 * 117.49545 * 223.62652 * 13 12 11 15 15 C 1.52999 * 117.49749 * 155.00352 * 13 12 11 16 16 C 1.39607 * 120.32060 * 359.74812 * 11 10 9 17 17 C 1.38046 * 120.54820 * 0.51239 * 16 11 10 18 18 C 1.38736 * 120.22365 * 359.48554 * 17 16 11 19 19 N 1.38863 * 120.16702 * 180.27765 * 18 17 16 20 20 H 0.96997 * 119.99760 * 0.02562 * 1 2 3 21 21 H 1.07995 * 120.11773 * 359.97438 * 10 9 7 22 22 H 0.96998 * 120.00453 * 0.02562 * 12 11 10 23 23 H 1.09000 * 115.55272 * 9.33409 * 13 12 11 24 24 H 1.09000 * 117.50236 * 359.97438 * 14 13 12 25 25 H 1.09000 * 117.50028 * 145.02332 * 14 13 12 26 26 H 1.08992 * 117.49946 * 214.98042 * 15 13 12 27 27 H 1.08999 * 117.49959 * 0.02562 * 15 13 12 28 28 H 1.08001 * 119.72354 * 180.24876 * 16 11 10 29 29 H 1.08005 * 119.89259 * 179.76823 * 17 16 11 30 30 H 0.97002 * 119.99800 * 0.02562 * 19 18 17 31 31 H 0.96998 * 119.99922 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.7031 1.3463 0.0006 5 1 1.8844 2.3963 -1.2125 6 1 1.8844 2.3964 1.2125 7 6 2.0084 -1.2115 0.0005 8 1 3.0569 -1.2298 -0.2579 9 6 1.3444 -2.4089 0.3383 10 6 0.2151 -2.3812 1.1765 11 6 -0.4271 -3.5591 1.5001 12 7 -1.5497 -3.5333 2.3338 13 6 -2.2339 -4.7817 2.6799 14 6 -3.7633 -4.7835 2.6402 15 6 -3.0330 -4.8111 3.9843 16 6 0.0356 -4.7757 0.9954 17 6 1.1457 -4.8188 0.1760 18 6 1.8087 -3.6484 -0.1638 19 7 2.9218 -3.6925 -0.9928 20 1 -0.4849 0.8400 -0.0004 21 1 -0.1481 -1.4415 1.5655 22 1 -1.8754 -2.6889 2.6828 23 1 -1.7213 -5.6966 2.3830 24 1 -4.2606 -3.8558 2.3569 25 1 -4.2573 -5.6998 2.3170 26 1 -3.0464 -5.7454 4.5454 27 1 -3.0500 -3.9015 4.5847 28 1 -0.4768 -5.6913 1.2516 29 1 1.4967 -5.7663 -0.2055 30 1 3.2375 -4.5431 -1.3361 31 1 3.3833 -2.8727 -1.2292 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000166373705.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:13 Heat of formation + Delta-G solvation = 31.591038 kcal Electronic energy + Delta-G solvation = -14114.191717 eV Core-core repulsion = 11780.956977 eV Total energy + Delta-G solvation = -2333.234740 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.86829 -38.31984 -35.49329 -35.24057 -32.28710 -31.31473 -27.98708 -26.60247 -23.60660 -23.15934 -22.26142 -21.27070 -18.99978 -17.87436 -17.35715 -16.95969 -16.43814 -16.28832 -15.32052 -14.43656 -14.19765 -14.07045 -13.94041 -13.50432 -13.09677 -12.99076 -12.69319 -12.58622 -12.34761 -12.05767 -11.82805 -11.24579 -11.10081 -10.99696 -10.94208 -9.28347 -9.13162 -8.50424 -7.29370 -6.00617 1.10815 1.41190 1.49572 1.54792 1.62256 2.27119 2.80681 2.89371 3.16003 3.77048 3.95528 4.00684 4.12925 4.25984 4.62005 4.76359 4.80723 4.94868 5.08405 5.23282 5.28732 5.34285 5.44483 5.65237 5.89557 6.05688 6.15094 6.28249 6.56311 6.96447 7.05278 7.12111 7.22062 7.46429 7.67569 8.50854 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.028907 B = 0.008771 C = 0.006969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.396430 B = 3191.516661 C = 4017.071953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.032 3.968 3 Si 0.975 3.025 4 H -0.258 1.258 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.491 4.491 8 H 0.075 0.925 9 C 0.059 3.941 10 C -0.225 4.225 11 C 0.171 3.829 12 N -0.731 5.731 13 C 0.080 3.920 14 C -0.201 4.201 15 C -0.185 4.185 16 C -0.257 4.257 17 C -0.157 4.157 18 C 0.071 3.929 19 N -0.878 5.878 20 H 0.279 0.721 21 H 0.096 0.904 22 H 0.389 0.611 23 H 0.125 0.875 24 H 0.083 0.917 25 H 0.112 0.888 26 H 0.118 0.882 27 H 0.090 0.910 28 H 0.113 0.887 29 H 0.114 0.886 30 H 0.391 0.609 31 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.287 -5.287 3.478 6.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.181 4.181 3 Si 0.798 3.202 4 H -0.181 1.181 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.522 4.522 8 H 0.093 0.907 9 C 0.054 3.946 10 C -0.250 4.250 11 C 0.071 3.929 12 N -0.361 5.361 13 C -0.027 4.027 14 C -0.241 4.241 15 C -0.224 4.224 16 C -0.281 4.281 17 C -0.181 4.181 18 C -0.031 4.031 19 N -0.422 5.422 20 H 0.089 0.911 21 H 0.114 0.886 22 H 0.222 0.778 23 H 0.143 0.857 24 H 0.102 0.898 25 H 0.131 0.869 26 H 0.136 0.864 27 H 0.108 0.892 28 H 0.131 0.869 29 H 0.132 0.868 30 H 0.219 0.781 31 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -2.552 -5.301 3.501 6.846 hybrid contribution 0.262 1.261 -0.181 1.301 sum -2.290 -4.040 3.320 5.708 Atomic orbital electron populations 1.69975 1.08750 1.29349 1.38177 1.26592 0.95420 1.03980 0.92088 0.85261 0.79547 0.77103 0.78319 1.18105 1.19671 1.19736 1.19412 0.97202 0.91993 1.43630 0.90693 1.17373 0.93482 0.91697 0.92041 1.20447 1.02589 0.95186 1.06743 1.17621 0.88400 0.93879 0.92992 1.43856 1.30690 1.06757 1.54838 1.21551 0.90653 0.89549 1.00996 1.23477 0.95699 1.03597 1.01291 1.23408 1.04004 1.04072 0.90888 1.20012 1.02893 0.95104 1.10080 1.20080 0.98684 0.95470 1.03910 1.18046 0.93251 0.93666 0.98179 1.41682 1.32786 1.10227 1.57535 0.91098 0.88612 0.77778 0.85726 0.89808 0.86925 0.86427 0.89152 0.86936 0.86825 0.78129 0.78200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.32 10.97 21.82 0.24 -45.08 16 2 C 0.03 1.64 5.16 85.23 0.44 2.08 16 3 Si 0.98 39.55 29.59 68.60 2.03 41.58 16 4 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 5 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 6 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 7 C -0.49 -26.53 8.48 23.35 0.20 -26.33 16 8 H 0.08 3.83 6.71 -2.91 -0.02 3.81 16 9 C 0.06 3.25 5.57 -21.18 -0.12 3.13 16 10 C -0.23 -12.22 8.49 22.81 0.19 -12.03 16 11 C 0.17 8.17 6.64 38.14 0.25 8.43 16 12 N -0.73 -29.07 5.75 -318.96 -1.83 -30.90 16 13 C 0.08 2.50 6.32 44.99 0.28 2.78 16 14 C -0.20 -5.15 10.46 30.59 0.32 -4.83 16 15 C -0.19 -4.47 10.46 30.59 0.32 -4.15 16 16 C -0.26 -11.55 9.32 22.55 0.21 -11.34 16 17 C -0.16 -7.07 9.86 22.34 0.22 -6.85 16 18 C 0.07 3.45 6.79 38.97 0.26 3.71 16 19 N -0.88 -35.53 8.98 -50.31 -0.45 -35.98 16 20 H 0.28 13.86 8.30 -92.71 -0.77 13.09 16 21 H 0.10 5.49 6.23 -2.91 -0.02 5.48 16 22 H 0.39 15.14 8.83 -92.71 -0.82 14.32 16 23 H 0.13 3.82 5.88 -2.39 -0.01 3.81 16 24 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 25 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 26 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 27 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.11 4.38 5.86 -2.91 -0.02 4.37 16 29 H 0.11 4.36 8.06 -2.91 -0.02 4.34 16 30 H 0.39 12.96 8.83 -92.71 -0.82 12.14 16 31 H 0.39 15.63 7.06 -92.71 -0.65 14.98 16 Total: -1.00 -61.24 262.48 1.46 -59.78 By element: Atomic # 1 Polarization: 57.11 SS G_CDS: -1.11 Total: 56.00 kcal Atomic # 6 Polarization: -47.98 SS G_CDS: 2.59 Total: -45.40 kcal Atomic # 7 Polarization: -109.92 SS G_CDS: -2.05 Total: -111.96 kcal Atomic # 14 Polarization: 39.55 SS G_CDS: 2.03 Total: 41.58 kcal Total: -61.24 1.46 -59.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166373705.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.369 kcal (2) G-P(sol) polarization free energy of solvation -61.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds