Wall clock time and date at job start Mon Mar 30 2020 03:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50703 * 119.99815 * 2 1 4 4 N 1.46497 * 109.47282 * 125.00233 * 3 2 1 5 5 C 1.39851 * 120.00340 * 179.97438 * 4 3 2 6 6 C 1.39604 * 119.83617 * 0.25071 * 5 4 3 7 7 C 1.38057 * 120.54586 * 180.29994 * 6 5 4 8 8 C 1.38737 * 120.22417 * 359.45021 * 7 6 5 9 9 N 1.38861 * 120.16883 * 180.25433 * 8 7 6 10 10 C 1.41568 * 119.66706 * 0.27097 * 8 7 6 11 11 C 1.41026 * 120.26010 * 180.02562 * 10 8 7 12 12 H 1.08004 * 120.00738 * 334.22974 * 11 10 8 13 13 C 1.39895 * 119.99565 * 154.23464 * 11 10 8 14 14 N 1.30896 * 120.00117 * 342.94658 * 13 11 10 15 15 Si 1.86797 * 119.99825 * 162.94360 * 13 11 10 16 16 H 1.48508 * 109.47001 * 94.63831 * 15 13 11 17 17 H 1.48498 * 109.47154 * 214.63482 * 15 13 11 18 18 H 1.48499 * 109.47596 * 334.64008 * 15 13 11 19 19 C 1.38005 * 119.84173 * 180.02562 * 5 4 3 20 20 H 1.08004 * 120.00107 * 359.97438 * 1 2 3 21 21 H 1.07994 * 120.00098 * 180.02562 * 1 2 3 22 22 H 1.07995 * 119.99982 * 180.02562 * 2 1 3 23 23 H 1.08999 * 109.47368 * 4.99908 * 3 2 1 24 24 H 1.09001 * 109.47084 * 245.00527 * 3 2 1 25 25 H 0.97000 * 119.99595 * 0.02562 * 4 3 2 26 26 H 1.08001 * 119.72768 * 0.04556 * 6 5 4 27 27 H 1.08007 * 119.88971 * 179.72390 * 7 6 5 28 28 H 0.97005 * 119.99377 * 359.97438 * 9 8 7 29 29 H 0.96996 * 120.00547 * 180.02562 * 9 8 7 30 30 H 0.96992 * 120.00083 * 180.02562 * 14 13 11 31 31 H 1.08000 * 120.11561 * 0.02562 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9938 1.3320 1.1314 5 6 3.8086 2.4492 1.3404 6 6 3.7289 3.5393 0.4719 7 6 4.5307 4.6471 0.6609 8 6 5.4186 4.6931 1.7260 9 7 6.2208 5.8102 1.9181 10 6 5.5029 3.5953 2.6158 11 6 6.4006 3.6289 3.7029 12 1 7.2876 4.2430 3.6521 13 6 6.1422 2.8668 4.8472 14 7 4.9404 2.3941 5.0612 15 14 7.5121 2.5237 6.0699 16 1 7.4705 3.5351 7.1565 17 1 7.3312 1.1680 6.6483 18 1 8.8236 2.5954 5.3770 19 6 4.6841 2.4707 2.4069 20 1 -0.5400 0.9353 0.0004 21 1 -0.5400 -0.9352 0.0004 22 1 1.8500 -0.9353 -0.0004 23 1 1.3586 2.1317 0.0895 24 1 2.6212 1.4027 -0.9314 25 1 3.0451 0.5745 1.7351 26 1 3.0372 3.5140 -0.3572 27 1 4.4635 5.4827 -0.0201 28 1 6.1614 6.5608 1.3065 29 1 6.8409 5.8396 2.6633 30 1 4.7612 1.8660 5.8547 31 1 4.7408 1.6270 3.0787 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000166382585.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:28 Heat of formation + Delta-G solvation = 40.898606 kcal Electronic energy + Delta-G solvation = -13993.594531 eV Core-core repulsion = 11660.763397 eV Total energy + Delta-G solvation = -2332.831134 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -37.95604 -35.93881 -33.51738 -33.36787 -30.99720 -29.39095 -27.04658 -24.83103 -24.14251 -21.24090 -19.65308 -19.62892 -17.04340 -16.17176 -15.45768 -15.16806 -14.93299 -14.56326 -14.06563 -13.22191 -12.82578 -12.43497 -12.23573 -11.89138 -11.67389 -11.35045 -11.06123 -10.96372 -10.86965 -10.38651 -9.98512 -9.76555 -9.38242 -9.22717 -9.02171 -7.73307 -7.20505 -6.60191 -5.51333 -4.04034 2.29709 2.92274 3.14530 3.18959 3.32795 3.50403 4.04974 4.64156 4.83396 5.08388 5.28065 5.45211 5.81822 5.90864 6.04986 6.08570 6.38636 6.63228 6.67981 6.82965 7.14472 7.17708 7.33779 7.51419 7.72473 7.90545 8.02331 8.14423 8.48082 8.77591 8.92630 8.96410 9.02383 9.28335 9.36610 10.39086 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.027614 B = 0.008411 C = 0.006619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.723791 B = 3328.065948 C = 4229.121218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.159 4.159 3 C 0.163 3.837 4 N -0.761 5.761 5 C 0.176 3.824 6 C -0.257 4.257 7 C -0.152 4.152 8 C 0.084 3.916 9 N -0.889 5.889 10 C 0.096 3.904 11 C -0.465 4.465 12 H 0.071 0.929 13 C 0.077 3.923 14 N -0.799 5.799 15 Si 0.900 3.100 16 H -0.274 1.274 17 H -0.278 1.278 18 H -0.263 1.263 19 C -0.201 4.201 20 H 0.097 0.903 21 H 0.096 0.904 22 H 0.109 0.891 23 H 0.050 0.950 24 H 0.054 0.946 25 H 0.388 0.612 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.374 0.626 29 H 0.388 0.612 30 H 0.275 0.725 31 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.169 -2.289 -4.812 6.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.178 4.178 3 C 0.038 3.962 4 N -0.396 5.396 5 C 0.078 3.922 6 C -0.281 4.281 7 C -0.176 4.176 8 C -0.017 4.017 9 N -0.431 5.431 10 C 0.090 3.910 11 C -0.496 4.496 12 H 0.089 0.911 13 C -0.139 4.139 14 N -0.426 5.426 15 Si 0.726 3.274 16 H -0.199 1.199 17 H -0.203 1.203 18 H -0.187 1.187 19 C -0.226 4.226 20 H 0.116 0.884 21 H 0.114 0.886 22 H 0.127 0.873 23 H 0.068 0.932 24 H 0.072 0.928 25 H 0.221 0.779 26 H 0.103 0.897 27 H 0.102 0.898 28 H 0.199 0.801 29 H 0.216 0.784 30 H 0.085 0.915 31 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -3.439 -2.428 -4.797 6.382 hybrid contribution 0.665 -0.196 0.895 1.132 sum -2.774 -2.623 -3.901 5.458 Atomic orbital electron populations 1.23841 0.95867 1.01757 1.00919 1.23154 0.96126 0.98876 0.99595 1.20107 0.91569 0.93730 0.90807 1.44283 1.44468 1.19402 1.31458 1.17531 0.92463 0.86784 0.95417 1.19610 1.08362 0.96289 1.03800 1.19701 1.00845 0.98227 0.98872 1.17858 0.96576 0.88912 0.98325 1.41800 1.47941 1.18460 1.34948 1.16969 0.93372 0.89042 0.91567 1.19123 1.07170 1.24440 0.98832 0.91087 1.25752 0.95471 0.94213 0.98479 1.69886 1.19732 1.27416 1.25530 0.86443 0.82377 0.78290 0.80338 1.19943 1.20340 1.18736 1.20464 1.02904 1.00090 0.99136 0.88446 0.88577 0.87301 0.93197 0.92807 0.77865 0.89735 0.89762 0.80119 0.78351 0.91464 0.86553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.18 14.32 29.01 0.42 -1.76 16 2 C -0.16 -2.12 9.63 -36.03 -0.35 -2.47 16 3 C 0.16 2.68 5.34 -5.19 -0.03 2.65 16 4 N -0.76 -15.24 5.73 -59.81 -0.34 -15.58 16 5 C 0.18 4.24 6.64 -83.78 -0.56 3.68 16 6 C -0.26 -6.00 9.31 -39.14 -0.36 -6.36 16 7 C -0.15 -3.57 9.86 -39.46 -0.39 -3.96 16 8 C 0.08 2.08 6.79 -83.22 -0.56 1.51 16 9 N -0.89 -18.49 8.98 32.75 0.29 -18.19 16 10 C 0.10 2.58 5.57 -106.66 -0.59 1.99 16 11 C -0.46 -12.35 8.49 -37.91 -0.32 -12.67 16 12 H 0.07 1.79 6.69 -52.48 -0.35 1.44 16 13 C 0.08 1.96 5.14 -17.33 -0.09 1.87 16 14 N -0.80 -21.16 10.99 55.55 0.61 -20.55 16 15 Si 0.90 19.07 29.59 -169.99 -5.03 14.04 16 16 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 17 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 18 H -0.26 -5.54 7.11 56.52 0.40 -5.13 16 19 C -0.20 -5.34 8.50 -38.75 -0.33 -5.67 16 20 H 0.10 1.11 7.84 -52.48 -0.41 0.70 16 21 H 0.10 0.94 8.06 -52.49 -0.42 0.52 16 22 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 23 H 0.05 0.84 7.58 -51.93 -0.39 0.45 16 24 H 0.05 0.88 7.95 -51.93 -0.41 0.47 16 25 H 0.39 7.44 8.47 -40.82 -0.35 7.09 16 26 H 0.08 1.79 6.69 -52.49 -0.35 1.44 16 27 H 0.08 1.76 8.06 -52.48 -0.42 1.33 16 28 H 0.37 6.58 8.83 -40.82 -0.36 6.22 16 29 H 0.39 7.90 7.04 -40.82 -0.29 7.62 16 30 H 0.27 6.69 8.30 -40.82 -0.34 6.35 16 31 H 0.12 3.19 6.23 -52.49 -0.33 2.87 16 LS Contribution 266.01 15.07 4.01 4.01 Total: -1.00 -28.65 266.01 -7.27 -35.92 By element: Atomic # 1 Polarization: 25.18 SS G_CDS: -3.64 Total: 21.54 kcal Atomic # 6 Polarization: -18.02 SS G_CDS: -3.17 Total: -21.19 kcal Atomic # 7 Polarization: -54.89 SS G_CDS: 0.56 Total: -54.32 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.04 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -28.65 -7.27 -35.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166382585.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.820 kcal (2) G-P(sol) polarization free energy of solvation -28.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds