Wall clock time and date at job start Mon Mar 30 2020 03:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50703 * 119.99815 * 2 1 4 4 N 1.46497 * 109.47282 * 125.00233 * 3 2 1 5 5 C 1.39851 * 120.00340 * 179.97438 * 4 3 2 6 6 C 1.39604 * 119.83617 * 0.25071 * 5 4 3 7 7 C 1.38057 * 120.54586 * 180.29994 * 6 5 4 8 8 C 1.38737 * 120.22417 * 359.45021 * 7 6 5 9 9 N 1.38861 * 120.16883 * 180.25433 * 8 7 6 10 10 C 1.41568 * 119.66706 * 0.27097 * 8 7 6 11 11 C 1.41026 * 120.26010 * 180.02562 * 10 8 7 12 12 H 1.08004 * 120.00738 * 334.22974 * 11 10 8 13 13 C 1.39895 * 119.99565 * 154.23464 * 11 10 8 14 14 N 1.30896 * 120.00117 * 342.94658 * 13 11 10 15 15 Si 1.86797 * 119.99825 * 162.94360 * 13 11 10 16 16 H 1.48508 * 109.47001 * 94.63831 * 15 13 11 17 17 H 1.48498 * 109.47154 * 214.63482 * 15 13 11 18 18 H 1.48499 * 109.47596 * 334.64008 * 15 13 11 19 19 C 1.38005 * 119.84173 * 180.02562 * 5 4 3 20 20 H 1.08004 * 120.00107 * 359.97438 * 1 2 3 21 21 H 1.07994 * 120.00098 * 180.02562 * 1 2 3 22 22 H 1.07995 * 119.99982 * 180.02562 * 2 1 3 23 23 H 1.08999 * 109.47368 * 4.99908 * 3 2 1 24 24 H 1.09001 * 109.47084 * 245.00527 * 3 2 1 25 25 H 0.97000 * 119.99595 * 0.02562 * 4 3 2 26 26 H 1.08001 * 119.72768 * 0.04556 * 6 5 4 27 27 H 1.08007 * 119.88971 * 179.72390 * 7 6 5 28 28 H 0.97005 * 119.99377 * 359.97438 * 9 8 7 29 29 H 0.96996 * 120.00547 * 180.02562 * 9 8 7 30 30 H 0.96992 * 120.00083 * 180.02562 * 14 13 11 31 31 H 1.08000 * 120.11561 * 0.02562 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9938 1.3320 1.1314 5 6 3.8086 2.4492 1.3404 6 6 3.7289 3.5393 0.4719 7 6 4.5307 4.6471 0.6609 8 6 5.4186 4.6931 1.7260 9 7 6.2208 5.8102 1.9181 10 6 5.5029 3.5953 2.6158 11 6 6.4006 3.6289 3.7029 12 1 7.2876 4.2430 3.6521 13 6 6.1422 2.8668 4.8472 14 7 4.9404 2.3941 5.0612 15 14 7.5121 2.5237 6.0699 16 1 7.4705 3.5351 7.1565 17 1 7.3312 1.1680 6.6483 18 1 8.8236 2.5954 5.3770 19 6 4.6841 2.4707 2.4069 20 1 -0.5400 0.9353 0.0004 21 1 -0.5400 -0.9352 0.0004 22 1 1.8500 -0.9353 -0.0004 23 1 1.3586 2.1317 0.0895 24 1 2.6212 1.4027 -0.9314 25 1 3.0451 0.5745 1.7351 26 1 3.0372 3.5140 -0.3572 27 1 4.4635 5.4827 -0.0201 28 1 6.1614 6.5608 1.3065 29 1 6.8409 5.8396 2.6633 30 1 4.7612 1.8660 5.8547 31 1 4.7408 1.6270 3.0787 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000166382585.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:28 Heat of formation + Delta-G solvation = 22.508062 kcal Electronic energy + Delta-G solvation = -13994.392005 eV Core-core repulsion = 11660.763397 eV Total energy + Delta-G solvation = -2333.628608 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.75640 -37.44099 -35.35088 -34.86518 -32.54108 -31.30732 -28.69890 -26.69639 -25.65343 -23.06246 -21.45469 -20.78814 -18.91522 -17.84600 -17.25244 -16.65864 -16.57255 -16.19236 -15.52081 -14.71778 -14.37256 -14.20697 -13.75261 -13.62164 -13.36694 -13.14091 -12.81044 -12.66994 -12.11729 -12.03501 -11.71662 -11.47415 -11.17976 -10.91613 -10.39978 -9.40499 -9.14800 -8.50412 -7.30756 -5.99821 1.12206 1.28765 1.41784 1.50052 1.55496 1.65336 2.27801 2.91625 3.13922 3.77915 3.95954 4.00010 4.24498 4.59924 4.69264 4.78024 4.85516 5.01578 5.23914 5.33966 5.42239 5.65193 5.68324 5.80660 5.90172 6.06348 6.16422 6.28215 6.56829 6.97222 7.05542 7.12991 7.26161 7.47652 7.67756 8.51008 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.027614 B = 0.008411 C = 0.006619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.723791 B = 3328.065948 C = 4229.121218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.179 4.179 3 C 0.162 3.838 4 N -0.759 5.759 5 C 0.170 3.830 6 C -0.261 4.261 7 C -0.157 4.157 8 C 0.069 3.931 9 N -0.878 5.878 10 C 0.061 3.939 11 C -0.493 4.493 12 H 0.075 0.925 13 C 0.033 3.967 14 N -0.833 5.833 15 Si 0.975 3.025 16 H -0.266 1.266 17 H -0.273 1.273 18 H -0.260 1.260 19 C -0.227 4.227 20 H 0.100 0.900 21 H 0.121 0.879 22 H 0.119 0.881 23 H 0.047 0.953 24 H 0.054 0.946 25 H 0.390 0.610 26 H 0.107 0.893 27 H 0.112 0.888 28 H 0.391 0.609 29 H 0.390 0.610 30 H 0.280 0.720 31 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.572 -2.404 -5.293 6.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.197 4.197 3 C 0.038 3.962 4 N -0.393 5.393 5 C 0.070 3.930 6 C -0.285 4.285 7 C -0.181 4.181 8 C -0.033 4.033 9 N -0.422 5.422 10 C 0.056 3.944 11 C -0.524 4.524 12 H 0.093 0.907 13 C -0.180 4.180 14 N -0.460 5.460 15 Si 0.797 3.203 16 H -0.191 1.191 17 H -0.198 1.198 18 H -0.184 1.184 19 C -0.252 4.252 20 H 0.118 0.882 21 H 0.140 0.860 22 H 0.137 0.863 23 H 0.065 0.935 24 H 0.072 0.928 25 H 0.223 0.777 26 H 0.125 0.875 27 H 0.130 0.870 28 H 0.218 0.782 29 H 0.218 0.782 30 H 0.090 0.910 31 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.857 -2.531 -5.307 7.032 hybrid contribution 0.667 -0.149 0.947 1.168 sum -3.190 -2.679 -4.360 6.030 Atomic orbital electron populations 1.24097 0.95269 1.03132 0.97704 1.23008 0.96635 0.97658 1.02426 1.20230 0.91004 0.95607 0.89333 1.44413 1.44246 1.18265 1.32397 1.17668 0.92350 0.88201 0.94772 1.19933 1.08535 0.95962 1.04089 1.20056 1.00141 0.99111 0.98838 1.18038 0.97411 0.89459 0.98410 1.41670 1.47200 1.18043 1.35327 1.17377 0.94214 0.90137 0.92714 1.19393 1.07622 1.25777 0.99580 0.90687 1.26592 0.97672 0.93548 1.00154 1.69968 1.21579 1.28064 1.26400 0.85306 0.78995 0.78231 0.77751 1.19130 1.19825 1.18430 1.20439 1.04673 0.99902 1.00173 0.88179 0.86045 0.86338 0.93500 0.92799 0.77721 0.87524 0.86990 0.78167 0.78186 0.91023 0.88553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.39 14.32 67.78 0.97 -2.42 16 2 C -0.18 -4.45 9.63 25.64 0.25 -4.20 16 3 C 0.16 5.15 5.34 85.63 0.46 5.61 16 4 N -0.76 -30.36 5.73 -343.15 -1.97 -32.32 16 5 C 0.17 8.25 6.64 38.14 0.25 8.50 16 6 C -0.26 -11.99 9.31 22.56 0.21 -11.78 16 7 C -0.16 -7.19 9.86 22.35 0.22 -6.97 16 8 C 0.07 3.40 6.79 38.97 0.26 3.66 16 9 N -0.88 -35.88 8.98 -50.31 -0.45 -36.33 16 10 C 0.06 3.35 5.57 -21.18 -0.12 3.24 16 11 C -0.49 -26.70 8.49 23.36 0.20 -26.50 16 12 H 0.08 3.84 6.69 -2.91 -0.02 3.82 16 13 C 0.03 1.72 5.14 85.23 0.44 2.16 16 14 N -0.83 -45.18 10.99 21.82 0.24 -44.94 16 15 Si 0.98 39.47 29.59 68.60 2.03 41.50 16 16 H -0.27 -10.37 7.11 99.48 0.71 -9.67 16 17 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 18 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 19 C -0.23 -12.41 8.50 22.81 0.19 -12.22 16 20 H 0.10 2.02 7.84 -2.91 -0.02 1.99 16 21 H 0.12 1.92 8.06 -2.91 -0.02 1.90 16 22 H 0.12 2.71 8.06 -2.91 -0.02 2.69 16 23 H 0.05 1.51 7.58 -2.39 -0.02 1.50 16 24 H 0.05 1.70 7.95 -2.39 -0.02 1.69 16 25 H 0.39 15.11 8.47 -92.71 -0.79 14.32 16 26 H 0.11 4.33 6.69 -2.91 -0.02 4.31 16 27 H 0.11 4.40 8.06 -2.91 -0.02 4.38 16 28 H 0.39 13.12 8.83 -92.70 -0.82 12.31 16 29 H 0.39 15.73 7.04 -92.71 -0.65 15.08 16 30 H 0.28 13.89 8.30 -92.71 -0.77 13.12 16 31 H 0.10 5.54 6.23 -2.91 -0.02 5.52 16 Total: -1.00 -61.79 266.01 2.10 -59.69 By element: Atomic # 1 Polarization: 54.42 SS G_CDS: -1.09 Total: 53.32 kcal Atomic # 6 Polarization: -44.25 SS G_CDS: 3.34 Total: -40.92 kcal Atomic # 7 Polarization: -111.42 SS G_CDS: -2.18 Total: -113.60 kcal Atomic # 14 Polarization: 39.47 SS G_CDS: 2.03 Total: 41.50 kcal Total: -61.79 2.10 -59.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166382585.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.203 kcal (2) G-P(sol) polarization free energy of solvation -61.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds