Wall clock time and date at job start Mon Mar 30 2020 02:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 120.00194 * 2 1 4 4 H 1.48497 * 109.46945 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46820 * 299.99951 * 3 2 1 6 6 H 1.48495 * 109.46831 * 59.99730 * 3 2 1 7 7 C 1.37875 * 119.99952 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00249 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99861 * 0.02562 * 7 2 1 10 10 N 1.46904 * 109.46861 * 179.97438 * 9 7 2 11 11 C 1.47921 * 110.99820 * 73.84820 * 10 9 7 12 12 C 1.54591 * 102.60112 * 210.98500 * 11 10 9 13 13 C 1.51584 * 102.88889 * 25.54528 * 12 11 10 14 14 C 1.38129 * 131.49738 * 164.01282 * 13 12 11 15 15 C 1.38242 * 120.21916 * 180.27157 * 14 13 12 16 16 C 1.38313 * 119.93700 * 0.02562 * 15 14 13 17 17 C 1.38449 * 120.16910 * 359.87487 * 16 15 14 18 18 N 1.40022 * 119.96116 * 179.97438 * 17 16 15 19 19 C 1.38697 * 107.99163 * 344.03510 * 13 12 11 20 20 H 0.96999 * 120.00030 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.47111 * 60.00358 * 9 7 2 22 22 H 1.08998 * 109.47607 * 300.00207 * 9 7 2 23 23 H 1.08999 * 110.78441 * 92.70704 * 11 10 9 24 24 H 1.08999 * 110.78111 * 329.26715 * 11 10 9 25 25 H 1.09001 * 110.72611 * 143.88751 * 12 11 10 26 26 H 1.08999 * 110.73454 * 267.01282 * 12 11 10 27 27 H 1.08001 * 119.89256 * 0.25605 * 14 13 12 28 28 H 1.07998 * 120.03334 * 179.97438 * 15 14 13 29 29 H 1.08001 * 119.91668 * 179.84994 * 16 15 14 30 30 H 0.97000 * 119.99595 * 336.94279 * 18 17 16 31 31 H 0.97003 * 120.00080 * 156.94447 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 2.8421 -3.7689 1.3270 12 6 4.2409 -4.3206 0.9682 13 6 4.4534 -3.8112 -0.4436 14 6 5.5930 -3.7073 -1.2172 15 6 5.5196 -3.1932 -2.4984 16 6 4.3018 -2.7806 -3.0080 17 6 3.1550 -2.8836 -2.2391 18 7 1.9245 -2.4641 -2.7591 19 6 3.2241 -3.4069 -0.9427 20 1 -0.4850 0.8400 -0.0004 21 1 0.6247 -2.5571 -0.8897 22 1 0.6239 -2.5567 0.8902 23 1 2.2909 -4.4817 1.9404 24 1 2.9236 -2.8056 1.8304 25 1 4.9983 -3.9190 1.6413 26 1 4.2438 -5.4104 0.9926 27 1 6.5444 -4.0286 -0.8199 28 1 6.4126 -3.1130 -3.1006 29 1 4.2453 -2.3768 -4.0080 30 1 1.8984 -1.8168 -3.4811 31 1 1.0981 -2.8207 -2.3973 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168387315.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:32 Heat of formation + Delta-G solvation = 22.780167 kcal Electronic energy + Delta-G solvation = -14961.254743 eV Core-core repulsion = 12627.637935 eV Total energy + Delta-G solvation = -2333.616808 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.43633 -37.55905 -35.84545 -34.48421 -31.97904 -29.72042 -29.33626 -27.70277 -24.44945 -23.48020 -22.10939 -21.30565 -18.81317 -17.45823 -17.10502 -16.90544 -16.56442 -16.10833 -15.48931 -14.97329 -14.51864 -13.92974 -13.85642 -13.68868 -13.41896 -12.93951 -12.67374 -12.50757 -12.32253 -12.08356 -11.91586 -11.78786 -11.66543 -10.83964 -10.59045 -10.38924 -8.77603 -8.22246 -7.73041 -6.27449 0.72739 0.95018 1.30881 1.34658 1.45308 2.36937 3.01722 3.12801 3.34534 3.49922 3.91013 4.01896 4.35328 4.51756 4.58377 4.62512 4.80538 4.91491 5.06012 5.06795 5.18733 5.32138 5.36885 5.53059 5.69615 5.74678 5.89177 6.03340 6.19201 6.29179 6.53722 6.85285 7.01107 7.23283 7.40330 8.88656 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.026967 B = 0.012413 C = 0.011078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.039878 B = 2255.080866 C = 2526.975336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.022 3.978 3 Si 0.944 3.056 4 H -0.277 1.277 5 H -0.279 1.279 6 H -0.281 1.281 7 C -0.517 4.517 8 H 0.043 0.957 9 C 0.192 3.808 10 N -0.490 5.490 11 C 0.045 3.955 12 C -0.070 4.070 13 C -0.135 4.135 14 C -0.150 4.150 15 C -0.111 4.111 16 C -0.195 4.195 17 C 0.198 3.802 18 N -0.870 5.870 19 C 0.037 3.963 20 H 0.262 0.738 21 H 0.027 0.973 22 H 0.005 0.995 23 H 0.095 0.905 24 H 0.041 0.959 25 H 0.088 0.912 26 H 0.097 0.903 27 H 0.136 0.864 28 H 0.147 0.853 29 H 0.132 0.868 30 H 0.393 0.607 31 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.826 -6.013 -2.705 11.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.177 4.177 3 Si 0.771 3.229 4 H -0.202 1.202 5 H -0.205 1.205 6 H -0.207 1.207 7 C -0.556 4.556 8 H 0.062 0.938 9 C 0.066 3.934 10 N -0.205 5.205 11 C -0.081 4.081 12 C -0.108 4.108 13 C -0.138 4.138 14 C -0.170 4.170 15 C -0.130 4.130 16 C -0.219 4.219 17 C 0.092 3.908 18 N -0.412 5.412 19 C -0.064 4.064 20 H 0.071 0.929 21 H 0.045 0.955 22 H 0.023 0.977 23 H 0.113 0.887 24 H 0.059 0.941 25 H 0.106 0.894 26 H 0.115 0.885 27 H 0.154 0.846 28 H 0.165 0.835 29 H 0.150 0.850 30 H 0.221 0.779 31 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 8.335 -6.377 -2.748 10.848 hybrid contribution -0.190 1.974 0.134 1.988 sum 8.144 -4.403 -2.614 9.620 Atomic orbital electron populations 1.70034 1.06979 1.27325 1.51890 1.25521 0.95378 1.01746 0.95086 0.85717 0.78842 0.80679 0.77695 1.20167 1.20470 1.20660 1.21644 0.92320 0.92019 1.49616 0.93844 1.19711 0.91221 0.86318 0.96116 1.61197 1.14227 1.40476 1.04589 1.23159 0.94420 1.00111 0.90430 1.21244 0.95997 1.01255 0.92266 1.20719 0.92842 1.02762 0.97526 1.20370 0.97077 1.04718 0.94823 1.20967 0.97199 0.99329 0.95548 1.20667 0.92016 1.09028 1.00141 1.17539 0.87920 0.95170 0.90171 1.42473 1.04711 1.51067 1.42923 1.19434 0.91777 1.02586 0.92614 0.92887 0.95500 0.97726 0.88726 0.94061 0.89382 0.88477 0.84591 0.83531 0.84972 0.77915 0.77747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.05 13.29 21.45 0.28 -52.77 16 2 C 0.02 1.21 5.46 84.65 0.46 1.67 16 3 Si 0.94 44.43 29.54 68.60 2.03 46.45 16 4 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 6 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 7 C -0.52 -28.10 6.65 25.60 0.17 -27.93 16 8 H 0.04 2.48 6.80 -2.91 -0.02 2.46 16 9 C 0.19 9.83 4.56 85.56 0.39 10.22 16 10 N -0.49 -21.80 5.30 -692.27 -3.67 -25.48 16 11 C 0.05 1.74 6.68 86.65 0.58 2.32 16 12 C -0.07 -2.26 7.03 30.67 0.22 -2.05 16 13 C -0.13 -5.04 6.23 -19.50 -0.12 -5.16 16 14 C -0.15 -4.82 10.03 22.24 0.22 -4.59 16 15 C -0.11 -3.43 10.05 22.29 0.22 -3.20 16 16 C -0.19 -6.76 9.90 22.34 0.22 -6.54 16 17 C 0.20 8.07 6.07 38.30 0.23 8.31 16 18 N -0.87 -34.27 7.90 -50.78 -0.40 -34.68 16 19 C 0.04 1.59 4.35 38.30 0.17 1.76 16 20 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 21 H 0.03 1.44 5.48 -2.38 -0.01 1.43 16 22 H 0.00 0.26 8.03 -2.39 -0.02 0.24 16 23 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 24 H 0.04 1.77 7.28 -2.39 -0.02 1.75 16 25 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 26 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 27 H 0.14 3.48 8.06 -2.91 -0.02 3.46 16 28 H 0.15 3.41 8.06 -2.91 -0.02 3.38 16 29 H 0.13 3.91 8.06 -2.91 -0.02 3.88 16 30 H 0.39 13.77 8.90 -92.71 -0.83 12.94 16 31 H 0.39 16.41 6.21 -92.71 -0.58 15.84 16 Total: -1.00 -61.90 253.97 0.75 -61.15 By element: Atomic # 1 Polarization: 30.76 SS G_CDS: -0.25 Total: 30.51 kcal Atomic # 6 Polarization: -27.96 SS G_CDS: 2.76 Total: -25.20 kcal Atomic # 7 Polarization: -109.13 SS G_CDS: -3.79 Total: -112.92 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Total: -61.90 0.75 -61.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168387315.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.932 kcal (2) G-P(sol) polarization free energy of solvation -61.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds