Wall clock time and date at job start Mon Mar 30 2020 02:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86794 * 120.00099 * 2 1 4 4 H 1.48503 * 109.47373 * 240.00271 * 3 2 1 5 5 H 1.48505 * 109.46981 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47157 * 119.99837 * 3 2 1 7 7 C 1.38755 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99521 * 180.02562 * 7 2 1 9 9 N 1.36797 * 120.00080 * 0.02562 * 7 2 1 10 10 C 1.46582 * 120.69374 * 179.97438 * 9 7 2 11 11 C 1.51945 * 110.86915 * 96.26966 * 10 9 7 12 12 C 1.51953 * 112.56229 * 65.13179 * 11 10 9 13 13 N 1.46593 * 110.86093 * 294.89984 * 12 11 10 14 14 C 1.40228 * 118.58604 * 83.57910 * 13 12 11 15 15 C 1.38402 * 120.96159 * 113.91232 * 14 13 12 16 16 C 1.38395 * 119.66322 * 179.97438 * 15 14 13 17 17 C 1.38365 * 120.35980 * 0.02562 * 16 15 14 18 18 C 1.38283 * 120.33729 * 359.97438 * 17 16 15 19 19 C 1.38615 * 119.64221 * 359.97438 * 18 17 16 20 20 H 0.96995 * 119.99941 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.20485 * 216.62901 * 10 9 7 22 22 H 1.09007 * 109.20006 * 335.96007 * 10 9 7 23 23 H 1.08998 * 108.86655 * 185.92847 * 11 10 9 24 24 H 1.09002 * 108.86611 * 304.33882 * 11 10 9 25 25 H 1.08999 * 109.19200 * 55.25394 * 12 11 10 26 26 H 1.08997 * 109.19553 * 174.54100 * 12 11 10 27 27 H 0.97001 * 120.70560 * 263.58307 * 13 12 11 28 28 H 1.07997 * 120.16930 * 359.97438 * 15 14 13 29 29 H 1.08003 * 119.81715 * 180.29319 * 16 15 14 30 30 H 1.08000 * 119.82711 * 179.97438 * 17 16 15 31 31 H 1.07998 * 120.17965 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0100 -1.2017 -0.0005 8 1 3.0901 -1.2016 -0.0001 9 7 1.3260 -2.3864 -0.0016 10 6 2.0435 -3.6646 -0.0027 11 6 2.1732 -4.2138 1.4080 12 6 0.8295 -4.5744 2.0192 13 7 0.0018 -3.3785 2.2029 14 6 -0.7449 -2.9056 1.1142 15 6 -2.1285 -2.9310 1.1351 16 6 -2.8388 -2.4569 0.0460 17 6 -2.1730 -1.9597 -1.0604 18 6 -0.7908 -1.9308 -1.0892 19 6 -0.0724 -2.4028 -0.0018 20 1 -0.4850 0.8400 0.0004 21 1 1.4986 -4.3810 -0.6175 22 1 3.0388 -3.5167 -0.4220 23 1 2.7996 -5.1054 1.3830 24 1 2.6557 -3.4640 2.0351 25 1 0.3115 -5.2711 1.3601 26 1 0.9918 -5.0501 2.9863 27 1 -0.0286 -2.9240 3.0593 28 1 -2.6513 -3.3189 1.9968 29 1 -3.9186 -2.4712 0.0615 30 1 -2.7359 -1.5923 -1.9057 31 1 -0.2738 -1.5417 -1.9539 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168780252.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:11 Heat of formation + Delta-G solvation = 51.019790 kcal Electronic energy + Delta-G solvation = -15233.203492 eV Core-core repulsion = 12900.811245 eV Total energy + Delta-G solvation = -2332.392246 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.38622 -37.22055 -36.16896 -33.46959 -32.16325 -30.57931 -28.63305 -26.48592 -25.32220 -22.85223 -21.55985 -21.50965 -19.20399 -17.75774 -17.20016 -16.42405 -16.00114 -15.43592 -15.29240 -15.14743 -14.26520 -14.10493 -13.83970 -13.47536 -12.98029 -12.87371 -12.63312 -12.39947 -12.22929 -12.08427 -11.70776 -11.54774 -11.42988 -10.97207 -9.64107 -9.32735 -8.77903 -8.24121 -7.31849 -5.33063 1.16187 1.29262 1.44475 1.46685 1.52138 2.46040 3.21557 3.31864 3.48255 3.66607 4.15603 4.39391 4.58681 4.60030 4.66572 4.83928 4.93846 4.98274 5.09589 5.14087 5.27115 5.44905 5.47452 5.51694 5.75622 6.01312 6.16484 6.19826 6.48927 6.58892 7.02375 7.21766 7.47339 7.90692 8.18868 9.12214 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.024866 B = 0.015513 C = 0.011182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.773348 B = 1804.510095 C = 2503.420841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C -0.064 4.064 3 Si 0.973 3.027 4 H -0.279 1.279 5 H -0.297 1.297 6 H -0.282 1.282 7 C -0.252 4.252 8 H 0.083 0.917 9 N -0.552 5.552 10 C 0.138 3.862 11 C -0.158 4.158 12 C 0.149 3.851 13 N -0.783 5.783 14 C 0.115 3.885 15 C -0.159 4.159 16 C -0.155 4.155 17 C -0.151 4.151 18 C -0.055 4.055 19 C 0.213 3.787 20 H 0.245 0.755 21 H 0.043 0.957 22 H 0.058 0.942 23 H 0.089 0.911 24 H 0.041 0.959 25 H 0.047 0.953 26 H 0.086 0.914 27 H 0.385 0.615 28 H 0.115 0.885 29 H 0.123 0.877 30 H 0.108 0.892 31 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.073 -7.541 2.125 7.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.259 4.259 3 Si 0.802 3.198 4 H -0.206 1.206 5 H -0.223 1.223 6 H -0.208 1.208 7 C -0.381 4.381 8 H 0.101 0.899 9 N -0.263 5.263 10 C 0.014 3.986 11 C -0.199 4.199 12 C 0.024 3.976 13 N -0.426 5.426 14 C 0.018 3.982 15 C -0.181 4.181 16 C -0.175 4.175 17 C -0.171 4.171 18 C -0.081 4.081 19 C 0.112 3.888 20 H 0.056 0.944 21 H 0.061 0.939 22 H 0.077 0.923 23 H 0.108 0.892 24 H 0.060 0.940 25 H 0.066 0.934 26 H 0.104 0.896 27 H 0.220 0.780 28 H 0.133 0.867 29 H 0.141 0.859 30 H 0.126 0.874 31 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.040 -7.479 1.997 7.742 hybrid contribution 0.539 1.679 0.137 1.769 sum 0.579 -5.800 2.134 6.208 Atomic orbital electron populations 1.70322 1.05361 1.24289 1.53541 1.25586 0.96560 1.00716 1.03030 0.85234 0.77187 0.79491 0.77877 1.20557 1.22297 1.20838 1.19638 0.91289 0.83990 1.43137 0.89894 1.41946 1.00753 1.02531 1.81062 1.20923 0.95850 0.85647 0.96207 1.22292 0.99353 1.00662 0.97573 1.20837 0.89873 0.86637 1.00267 1.43769 1.54832 1.33261 1.10762 1.17917 0.90061 1.01677 0.88594 1.20930 0.92960 1.05071 0.99138 1.20713 0.98904 1.03633 0.94205 1.20712 0.93569 1.03733 0.99039 1.20497 0.93608 0.97999 0.95964 1.17551 0.83974 0.94442 0.92815 0.94402 0.93897 0.92333 0.89228 0.94038 0.93436 0.89606 0.78040 0.86671 0.85883 0.87415 0.91474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.08 8.63 21.64 0.19 -50.90 16 2 C -0.06 -3.49 5.37 84.85 0.46 -3.03 16 3 Si 0.97 45.04 29.55 68.60 2.03 47.07 16 4 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 5 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 6 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 7 C -0.25 -13.58 9.78 84.04 0.82 -12.75 16 8 H 0.08 4.29 7.81 -2.91 -0.02 4.26 16 9 N -0.55 -27.59 2.51 -512.97 -1.29 -28.88 16 10 C 0.14 5.55 5.88 86.02 0.51 6.05 16 11 C -0.16 -5.26 5.85 29.90 0.18 -5.08 16 12 C 0.15 4.82 6.51 86.02 0.56 5.38 16 13 N -0.78 -31.00 5.37 -340.24 -1.83 -32.83 16 14 C 0.11 5.24 5.99 38.18 0.23 5.46 16 15 C -0.16 -6.69 10.00 22.35 0.22 -6.47 16 16 C -0.15 -6.32 10.04 22.34 0.22 -6.10 16 17 C -0.15 -6.71 10.03 22.31 0.22 -6.48 16 18 C -0.05 -2.78 6.90 22.37 0.15 -2.63 16 19 C 0.21 10.72 3.65 38.29 0.14 10.86 16 20 H 0.24 14.03 8.31 -92.71 -0.77 13.26 16 21 H 0.04 1.66 8.07 -2.39 -0.02 1.64 16 22 H 0.06 2.23 7.99 -2.38 -0.02 2.21 16 23 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 24 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.05 1.53 8.07 -2.39 -0.02 1.51 16 26 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.39 14.77 8.96 -92.71 -0.83 13.94 16 28 H 0.12 4.24 8.06 -2.91 -0.02 4.22 16 29 H 0.12 4.18 8.06 -2.91 -0.02 4.16 16 30 H 0.11 4.27 8.06 -2.91 -0.02 4.25 16 31 H 0.07 3.65 8.05 -2.91 -0.02 3.63 16 Total: -1.00 -61.54 253.27 3.10 -58.44 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: 0.29 Total: 21.87 kcal Atomic # 6 Polarization: -18.50 SS G_CDS: 3.71 Total: -14.78 kcal Atomic # 7 Polarization: -109.67 SS G_CDS: -2.93 Total: -112.60 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -61.54 3.10 -58.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168780252.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.459 kcal (2) G-P(sol) polarization free energy of solvation -61.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds