Wall clock time and date at job start Mon Mar 30 2020 03:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39962 * 126.45109 * 2 1 4 4 C 1.35362 * 107.85885 * 180.02562 * 3 2 1 5 5 C 1.50696 * 125.57588 * 180.02562 * 4 3 2 6 6 N 1.35764 * 108.84904 * 359.73901 * 4 3 2 7 7 C 1.46497 * 125.68112 * 180.26324 * 6 4 3 8 8 C 1.52993 * 109.47296 * 270.22221 * 7 6 4 9 9 C 1.50694 * 109.47328 * 180.02562 * 8 7 6 10 10 H 1.08003 * 120.00319 * 359.97438 * 9 8 7 11 11 C 1.37887 * 120.00191 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99859 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 119.99913 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47385 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.47240 * 120.00083 * 13 11 9 16 16 H 1.48508 * 109.46814 * 239.99635 * 13 11 9 17 17 C 1.37578 * 108.63638 * 0.43151 * 6 4 3 18 18 C 1.43205 * 126.22100 * 179.83391 * 17 6 4 19 19 N 3.56075 * 90.87230 * 180.02562 * 2 1 3 20 20 H 1.09002 * 109.46888 * 269.97287 * 1 2 3 21 21 H 1.09008 * 109.47163 * 29.96655 * 1 2 3 22 22 H 1.08998 * 109.47514 * 149.97249 * 1 2 3 23 23 H 1.08005 * 126.06864 * 0.06372 * 3 2 1 24 24 H 1.09006 * 109.46583 * 89.98096 * 5 4 3 25 25 H 1.09002 * 109.47138 * 209.97636 * 5 4 3 26 26 H 1.09002 * 109.47253 * 329.98348 * 5 4 3 27 27 H 1.08996 * 109.47064 * 30.22606 * 7 6 4 28 28 H 1.09002 * 109.47228 * 150.22233 * 7 6 4 29 29 H 1.09008 * 109.47035 * 300.00124 * 8 7 6 30 30 H 1.08993 * 109.47199 * 59.99738 * 8 7 6 31 31 H 0.96990 * 119.99974 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3386 1.1258 0.0000 4 6 3.6215 0.6942 -0.0006 5 6 4.8433 1.5764 -0.0002 6 7 3.6276 -0.6634 0.0049 7 6 4.8214 -1.5125 0.0117 8 6 5.2443 -1.8094 -1.4284 9 6 6.4719 -2.6833 -1.4215 10 1 6.9073 -2.9955 -0.4837 11 6 7.0400 -3.0836 -2.6124 12 7 6.5101 -2.7031 -3.7544 13 14 8.5612 -4.1675 -2.6037 14 1 8.9570 -4.4540 -1.2014 15 1 8.2647 -5.4424 -3.3051 16 1 9.6718 -3.4674 -3.2979 17 6 2.3260 -1.1089 -0.0007 18 6 1.8995 -2.4760 -0.0010 19 7 1.5612 -3.5603 -0.0016 20 1 -0.3633 -0.0005 1.0277 21 1 -0.3634 0.8903 -0.5133 22 1 -0.3634 -0.8897 -0.5142 23 1 2.0141 2.1560 0.0010 24 1 5.1378 1.7886 1.0276 25 1 5.6589 1.0678 -0.5142 26 1 4.6169 2.5109 -0.5136 27 1 5.6307 -0.9974 0.5292 28 1 4.5991 -2.4479 0.5252 29 1 4.4349 -2.3245 -1.9459 30 1 5.4666 -0.8740 -1.9419 31 1 6.9095 -2.9850 -4.5921 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000212923940.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:51 Heat of formation + Delta-G solvation = 36.301752 kcal Electronic energy + Delta-G solvation = -14019.828351 eV Core-core repulsion = 11686.797882 eV Total energy + Delta-G solvation = -2333.030468 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.34682 -37.55398 -36.26744 -34.50372 -32.91557 -31.52376 -28.78558 -27.60967 -26.16386 -23.30406 -21.71816 -20.74142 -19.05398 -18.20145 -16.74879 -16.31355 -16.01997 -15.43213 -14.69930 -14.59733 -14.34575 -14.25732 -13.92906 -13.79925 -13.61977 -13.58016 -13.35593 -12.97338 -12.89866 -12.77387 -12.44815 -12.19078 -12.08833 -11.74591 -11.44411 -10.67944 -9.42218 -8.88515 -8.30468 -6.44248 0.45267 1.26840 1.36864 1.38241 1.50684 1.83217 2.14393 2.36413 2.44255 2.99225 3.04131 3.84687 4.00443 4.25401 4.33442 4.36990 4.58772 4.71765 4.84860 4.89374 4.95580 5.11743 5.16076 5.22281 5.32849 5.37968 5.46106 5.64905 5.95616 6.02613 6.16503 6.32477 6.45758 6.71494 7.26688 8.81625 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.032972 B = 0.007638 C = 0.006710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.999381 B = 3665.016982 C = 4171.820109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.080 4.080 3 C -0.205 4.205 4 C 0.061 3.939 5 C -0.091 4.091 6 N -0.419 5.419 7 C 0.114 3.886 8 C 0.027 3.973 9 C -0.547 4.547 10 H 0.070 0.930 11 C 0.005 3.995 12 N -0.929 5.929 13 Si 0.968 3.032 14 H -0.258 1.258 15 H -0.284 1.284 16 H -0.273 1.273 17 C -0.004 4.004 18 C 0.300 3.700 19 N -0.463 5.463 20 H 0.083 0.917 21 H 0.094 0.906 22 H 0.047 0.953 23 H 0.179 0.821 24 H 0.096 0.904 25 H 0.054 0.946 26 H 0.107 0.893 27 H 0.110 0.890 28 H 0.069 0.931 29 H -0.021 1.021 30 H 0.009 0.991 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.667 11.110 8.578 15.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.091 4.091 3 C -0.229 4.229 4 C -0.058 4.058 5 C -0.148 4.148 6 N -0.094 5.094 7 C -0.007 4.007 8 C -0.011 4.011 9 C -0.585 4.585 10 H 0.088 0.912 11 C -0.194 4.194 12 N -0.568 5.568 13 Si 0.793 3.207 14 H -0.182 1.182 15 H -0.210 1.210 16 H -0.198 1.198 17 C -0.115 4.115 18 C -0.013 4.013 19 N -0.141 5.141 20 H 0.102 0.898 21 H 0.113 0.887 22 H 0.066 0.934 23 H 0.196 0.804 24 H 0.115 0.885 25 H 0.073 0.927 26 H 0.125 0.875 27 H 0.128 0.872 28 H 0.087 0.913 29 H -0.003 1.003 30 H 0.027 0.973 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.851 9.164 8.412 13.747 hybrid contribution 0.919 -0.734 -0.582 1.312 sum -4.932 8.430 7.831 12.518 Atomic orbital electron populations 1.20335 0.87660 1.03031 1.03101 1.20229 0.96520 0.90062 1.02290 1.20824 0.89748 0.99490 1.12792 1.21253 0.98941 0.81485 1.04091 1.20566 0.91921 0.98086 1.04225 1.44421 1.04667 1.06859 1.53439 1.22060 0.85050 0.93717 0.99839 1.19189 0.95085 0.96057 0.90777 1.21488 1.11869 1.31839 0.93315 0.91214 1.25977 1.00904 0.97515 0.95043 1.70107 1.42129 1.46411 0.98170 0.85344 0.78532 0.77982 0.78889 1.18163 1.20959 1.19786 1.15789 0.85254 0.85945 1.24553 1.24730 0.93329 0.91405 0.91867 1.81174 1.08724 1.11043 1.13205 0.89811 0.88693 0.93362 0.80360 0.88543 0.92690 0.87482 0.87177 0.91283 1.00294 0.97289 0.92550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.79 10.18 71.24 0.73 -1.06 16 2 C -0.08 -2.26 6.21 -19.54 -0.12 -2.38 16 3 C -0.21 -5.12 10.66 22.02 0.23 -4.89 16 4 C 0.06 1.75 6.87 41.28 0.28 2.04 16 5 C -0.09 -2.02 9.84 71.23 0.70 -1.32 16 6 N -0.42 -15.05 2.77 -500.21 -1.38 -16.43 16 7 C 0.11 4.56 5.42 86.38 0.47 5.02 16 8 C 0.03 1.37 5.30 29.84 0.16 1.53 16 9 C -0.55 -30.05 9.11 25.60 0.23 -29.81 16 10 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 11 C 0.00 0.26 5.46 84.66 0.46 0.72 16 12 N -0.93 -56.00 13.29 21.45 0.28 -55.71 16 13 Si 0.97 43.40 29.54 68.60 2.03 45.42 16 14 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 15 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 16 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 17 C 0.00 -0.14 6.75 39.40 0.27 0.13 16 18 C 0.30 11.90 14.79 88.33 1.31 13.21 16 19 N -0.46 -19.68 18.54 19.00 0.35 -19.33 16 20 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 21 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 22 H 0.05 1.13 7.94 -2.39 -0.02 1.12 16 23 H 0.18 3.05 8.06 -2.91 -0.02 3.03 16 24 H 0.10 1.68 8.14 -2.38 -0.02 1.66 16 25 H 0.05 1.49 7.67 -2.39 -0.02 1.47 16 26 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.11 3.83 7.61 -2.39 -0.02 3.81 16 28 H 0.07 2.83 7.79 -2.39 -0.02 2.81 16 29 H -0.02 -1.27 8.14 -2.38 -0.02 -1.29 16 30 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.27 15.02 8.31 -92.72 -0.77 14.25 16 Total: -1.00 -67.50 280.01 7.11 -60.39 By element: Atomic # 1 Polarization: 1.38 SS G_CDS: 1.11 Total: 2.49 kcal Atomic # 6 Polarization: -21.55 SS G_CDS: 4.72 Total: -16.83 kcal Atomic # 7 Polarization: -90.73 SS G_CDS: -0.75 Total: -91.47 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Total: -67.50 7.11 -60.39 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212923940.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.693 kcal (2) G-P(sol) polarization free energy of solvation -67.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds