Wall clock time and date at job start Mon Mar 30 2020 02:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35644 * 117.00247 * 2 1 4 4 C 1.38436 * 120.33028 * 359.97378 * 3 2 1 5 5 C 1.38130 * 119.99731 * 180.02562 * 4 3 2 6 6 C 1.39214 * 120.92944 * 359.97438 * 5 4 3 7 7 C 1.36494 * 120.19708 * 0.02562 * 6 5 4 8 8 C 1.41003 * 119.84884 * 0.02562 * 7 6 5 9 9 C 1.41146 * 120.15701 * 180.02562 * 8 7 6 10 10 H 1.08010 * 119.99897 * 38.70808 * 9 8 7 11 11 C 1.39932 * 120.00375 * 218.71472 * 9 8 7 12 12 N 1.30864 * 120.00009 * 20.35825 * 11 9 8 13 13 Si 1.86796 * 120.00232 * 200.36433 * 11 9 8 14 14 H 1.48503 * 109.47331 * 359.97438 * 13 11 9 15 15 H 1.48506 * 109.47592 * 119.99444 * 13 11 9 16 16 H 1.48496 * 109.47432 * 239.99530 * 13 11 9 17 17 C 1.51392 * 110.08823 * 179.97438 * 7 6 5 18 18 C 1.54368 * 105.07816 * 342.88510 * 17 7 6 19 19 C 1.51502 * 129.86831 * 180.02562 * 6 5 4 20 20 H 1.08999 * 109.47088 * 300.00648 * 1 2 3 21 21 H 1.09004 * 109.46803 * 59.99930 * 1 2 3 22 22 H 1.08993 * 109.47427 * 180.02562 * 1 2 3 23 23 H 1.08003 * 120.00096 * 359.97438 * 4 3 2 24 24 H 1.08001 * 119.53922 * 179.97438 * 5 4 3 25 25 H 0.96999 * 120.00215 * 180.02562 * 12 11 9 26 26 H 1.08998 * 110.32154 * 223.98788 * 17 7 6 27 27 H 1.08996 * 110.40846 * 101.82909 * 17 7 6 28 28 H 1.09002 * 110.86802 * 267.94816 * 18 17 7 29 29 H 1.09000 * 111.05144 * 144.34764 * 18 17 7 30 30 H 1.08996 * 110.31105 * 78.21097 * 19 6 5 31 31 H 1.09001 * 110.30934 * 316.02922 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 1.2976 2.3740 -0.0005 5 6 1.9319 3.6010 -0.0011 6 6 3.3213 3.6883 -0.0005 7 6 4.0804 2.5539 0.0000 8 6 3.4544 1.2905 -0.0005 9 6 4.2330 0.1133 0.0006 10 1 5.1391 0.0656 0.5866 11 6 3.8313 -0.9921 -0.7576 12 7 2.9965 -0.8343 -1.7530 13 14 4.4866 -2.6930 -0.3490 14 1 5.4084 -2.6027 0.8118 15 1 3.3537 -3.5925 -0.0130 16 1 5.2190 -3.2361 -1.5210 17 6 5.5513 2.9125 -0.0001 18 6 5.6040 4.3915 -0.4394 19 6 4.2176 4.9097 -0.0004 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 0.2187 2.3237 -0.0014 24 1 1.3417 4.5055 -0.0019 25 1 2.7178 -1.6006 -2.2784 26 1 6.0932 2.2874 -0.7097 27 1 5.9701 2.7996 0.9998 28 1 5.7245 4.4715 -1.5198 29 1 6.4001 4.9258 0.0790 30 1 4.2727 5.3385 1.0001 31 1 3.8487 5.6498 -0.7105 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214483009.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:44 Heat of formation + Delta-G solvation = -22.685664 kcal Electronic energy + Delta-G solvation = -14769.206991 eV Core-core repulsion = 12401.325885 eV Total energy + Delta-G solvation = -2367.881106 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.94405 -37.17244 -33.86629 -33.08303 -30.18337 -27.35137 -26.97758 -25.94194 -24.33151 -21.24779 -19.77840 -19.30060 -16.92757 -16.00332 -15.20849 -14.88021 -14.51910 -14.29274 -13.73786 -13.24034 -12.50398 -12.20560 -12.00362 -11.68579 -11.40565 -11.18624 -10.87616 -10.64759 -10.51920 -10.38578 -10.33571 -10.30341 -10.04311 -9.36990 -9.18369 -8.78046 -7.25205 -6.64061 -6.48866 -4.13862 2.82955 2.98414 3.20610 3.25207 3.26526 4.13536 4.70541 4.81666 5.46575 5.56426 5.59781 5.72119 5.94240 6.02382 6.10723 6.22609 6.28472 6.40438 6.45691 6.55246 6.56905 6.73219 6.87602 6.95904 7.15897 7.33639 7.46353 7.78207 7.85514 8.07750 8.23702 8.59170 8.66164 9.06166 9.26116 10.44855 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.027457 B = 0.012830 C = 0.009221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.535686 B = 2181.924440 C = 3035.828755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.278 6.278 3 C 0.072 3.928 4 C -0.190 4.190 5 C -0.188 4.188 6 C -0.110 4.110 7 C -0.164 4.164 8 C 0.113 3.887 9 C -0.471 4.471 10 H 0.076 0.924 11 C 0.091 3.909 12 N -0.775 5.775 13 Si 0.897 3.103 14 H -0.263 1.263 15 H -0.275 1.275 16 H -0.280 1.280 17 C -0.056 4.056 18 C -0.121 4.121 19 C -0.071 4.071 20 H 0.033 0.967 21 H 0.038 0.962 22 H 0.076 0.924 23 H 0.097 0.903 24 H 0.086 0.914 25 H 0.275 0.725 26 H 0.062 0.938 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.474 3.221 1.744 3.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.190 6.190 3 C 0.026 3.974 4 C -0.210 4.210 5 C -0.208 4.208 6 C -0.110 4.110 7 C -0.166 4.166 8 C 0.110 3.890 9 C -0.501 4.501 10 H 0.094 0.906 11 C -0.127 4.127 12 N -0.400 5.400 13 Si 0.722 3.278 14 H -0.187 1.187 15 H -0.200 1.200 16 H -0.205 1.205 17 C -0.093 4.093 18 C -0.158 4.158 19 C -0.108 4.108 20 H 0.052 0.948 21 H 0.056 0.944 22 H 0.094 0.906 23 H 0.115 0.885 24 H 0.105 0.895 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.496 2.904 1.547 3.327 hybrid contribution -0.290 -0.710 0.022 0.767 sum -0.786 2.194 1.570 2.810 Atomic orbital electron populations 1.22692 0.82979 1.01285 0.99327 1.86192 1.16872 1.27233 1.88728 1.19081 0.92075 0.82651 1.03580 1.20587 0.97466 0.92877 1.10040 1.19580 0.92521 0.95311 1.13372 1.19777 0.93083 0.94551 1.03608 1.19864 0.93887 0.92216 1.10610 1.16438 0.88241 0.91987 0.92302 1.19159 1.08720 0.96464 1.25738 0.90562 1.25597 0.93683 1.00147 0.93315 1.69752 1.25598 1.32340 1.12327 0.86458 0.79331 0.82743 0.79232 1.18716 1.19992 1.20539 1.20620 0.94483 0.94202 0.99961 1.22269 0.96328 0.96809 1.00405 1.20893 0.94095 0.95918 0.99882 0.94850 0.94380 0.90563 0.88516 0.89527 0.91437 0.91905 0.92665 0.91921 0.92165 0.92102 0.92676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 9.82 101.05 0.99 1.66 16 2 O -0.28 -7.05 7.39 -18.63 -0.14 -7.19 16 3 C 0.07 1.89 6.17 -38.39 -0.24 1.66 16 4 C -0.19 -4.55 9.03 -39.55 -0.36 -4.91 16 5 C -0.19 -4.34 10.03 -39.26 -0.39 -4.73 16 6 C -0.11 -2.53 6.10 -104.49 -0.64 -3.16 16 7 C -0.16 -4.07 6.02 -103.86 -0.63 -4.70 16 8 C 0.11 3.09 5.37 -106.62 -0.57 2.52 16 9 C -0.47 -12.92 8.59 -37.84 -0.32 -13.25 16 10 H 0.08 2.03 7.92 -52.48 -0.42 1.62 16 11 C 0.09 2.41 4.39 -17.33 -0.08 2.33 16 12 N -0.78 -21.02 11.25 55.55 0.62 -20.39 16 13 Si 0.90 19.80 29.61 -169.99 -5.03 14.76 16 14 H -0.26 -5.75 7.11 56.52 0.40 -5.34 16 15 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 16 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 17 C -0.06 -1.16 6.43 -26.83 -0.17 -1.33 16 18 C -0.12 -2.10 7.11 -25.29 -0.18 -2.28 16 19 C -0.07 -1.30 6.78 -26.77 -0.18 -1.49 16 20 H 0.03 0.59 7.67 -51.93 -0.40 0.19 16 21 H 0.04 0.72 7.67 -51.93 -0.40 0.32 16 22 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 23 H 0.10 2.05 6.32 -52.48 -0.33 1.72 16 24 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 25 H 0.28 6.86 8.30 -40.82 -0.34 6.52 16 26 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 27 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 258.33 15.07 3.89 3.89 Total: -1.00 -29.35 258.33 -7.48 -36.83 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -4.06 Total: -0.22 kcal Atomic # 6 Polarization: -24.91 SS G_CDS: -2.77 Total: -27.68 kcal Atomic # 7 Polarization: -21.02 SS G_CDS: 0.62 Total: -20.39 kcal Atomic # 8 Polarization: -7.05 SS G_CDS: -0.14 Total: -7.19 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.03 Total: 14.76 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -29.35 -7.48 -36.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214483009.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.139 kcal (2) G-P(sol) polarization free energy of solvation -29.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds