Wall clock time and date at job start Mon Mar 30 2020 02:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.68471 * 2 1 4 4 C 1.53420 * 109.68278 * 120.53151 * 2 1 3 5 5 C 1.53069 * 108.23517 * 184.21709 * 4 2 1 6 6 C 1.50735 * 109.71721 * 311.96053 * 5 4 2 7 7 C 1.40956 * 118.76699 * 197.68450 * 6 5 4 8 8 C 1.41406 * 120.09081 * 0.31950 * 7 6 5 9 9 H 1.07995 * 120.00193 * 333.78868 * 8 7 6 10 10 C 1.39936 * 119.99499 * 153.79343 * 8 7 6 11 11 N 1.30830 * 120.00287 * 343.84736 * 10 8 7 12 12 Si 1.86807 * 119.99880 * 163.84587 * 10 8 7 13 13 H 1.48496 * 109.47078 * 89.99706 * 12 10 8 14 14 H 1.48496 * 109.46938 * 210.00285 * 12 10 8 15 15 H 1.48498 * 109.46799 * 329.99996 * 12 10 8 16 16 C 1.40595 * 119.80878 * 180.33453 * 7 6 5 17 17 C 1.37669 * 119.69421 * 359.91588 * 16 7 6 18 18 C 1.38346 * 120.23437 * 359.91193 * 17 16 7 19 19 C 1.37743 * 121.55921 * 17.73360 * 6 5 4 20 20 O 1.35891 * 121.78417 * 359.61564 * 19 6 5 21 21 H 1.08996 * 109.47619 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.46786 * 299.99864 * 1 2 3 23 23 H 1.08997 * 109.47067 * 59.99383 * 1 2 3 24 24 H 1.09000 * 109.70952 * 303.93306 * 4 2 1 25 25 H 1.08994 * 109.71056 * 64.56144 * 4 2 1 26 26 H 1.09004 * 109.44896 * 191.87278 * 5 4 2 27 27 H 1.09000 * 109.36413 * 71.99843 * 5 4 2 28 28 H 0.97003 * 119.99948 * 180.02562 * 11 10 8 29 29 H 1.08005 * 120.15218 * 179.97438 * 16 7 6 30 30 H 1.08001 * 119.88525 * 179.97438 * 17 16 7 31 31 H 1.08000 * 119.62212 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8972 1.0262 0.0000 4 6 2.0468 -0.7339 1.2443 5 6 3.5733 -0.6228 1.2664 6 6 4.1288 -0.9785 -0.0889 7 6 5.4950 -1.3080 -0.1969 8 6 6.3174 -1.3079 0.9534 9 1 6.0651 -0.6834 1.7976 10 6 7.4584 -2.1169 0.9978 11 7 7.6020 -3.0931 0.1386 12 14 8.7765 -1.8030 2.2837 13 1 8.4737 -2.5909 3.5054 14 1 10.0993 -2.2112 1.7465 15 1 8.8041 -0.3572 2.6214 16 6 6.0377 -1.6364 -1.4517 17 6 5.2291 -1.6353 -2.5659 18 6 3.8881 -1.3145 -2.4530 19 6 3.3343 -0.9868 -1.2141 20 8 2.0110 -0.6829 -1.1582 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 1.6313 -0.2744 2.1411 25 1 1.7556 -1.7832 1.1996 26 1 3.9761 -1.3061 2.0141 27 1 3.8577 0.3989 1.5181 28 1 8.3927 -3.6541 0.1697 29 1 7.0840 -1.8893 -1.5408 30 1 5.6429 -1.8866 -3.5313 31 1 3.2627 -1.3171 -3.3335 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214483997.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:47 Heat of formation + Delta-G solvation = -40.380058 kcal Electronic energy + Delta-G solvation = -14586.616516 eV Core-core repulsion = 12217.968123 eV Total energy + Delta-G solvation = -2368.648392 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.46149 -36.48595 -33.84985 -33.07954 -31.12485 -29.19186 -27.13583 -25.20200 -23.13587 -21.95590 -20.70925 -18.78587 -17.59901 -15.97039 -15.60895 -14.81684 -14.51550 -13.92164 -13.35201 -13.09221 -12.97029 -12.43176 -12.29793 -12.02282 -11.72370 -11.69367 -11.26015 -11.09431 -10.71406 -10.55387 -10.34591 -10.16850 -9.74991 -9.54609 -9.11000 -9.08243 -7.32134 -6.84113 -6.70717 -4.38799 2.77347 3.01758 3.05876 3.09940 3.23349 3.91465 4.14914 4.62837 5.17223 5.33476 5.48565 5.63767 5.75439 5.88155 5.99286 6.00713 6.27970 6.33033 6.36527 6.51016 6.69861 6.83492 6.90987 7.02259 7.12433 7.26356 7.40312 7.77289 7.96452 8.07598 8.25072 8.45319 8.68539 8.89043 9.03141 10.18176 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.037756 B = 0.009445 C = 0.007795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.416772 B = 2963.783001 C = 3591.132766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.089 3.911 3 H 0.060 0.940 4 C -0.151 4.151 5 C -0.049 4.049 6 C -0.263 4.263 7 C 0.136 3.864 8 C -0.459 4.459 9 H 0.079 0.921 10 C 0.077 3.923 11 N -0.791 5.791 12 Si 0.906 3.094 13 H -0.270 1.270 14 H -0.276 1.276 15 H -0.261 1.261 16 C -0.187 4.187 17 C -0.081 4.081 18 C -0.265 4.265 19 C 0.146 3.854 20 O -0.330 6.330 21 H 0.061 0.939 22 H 0.069 0.931 23 H 0.060 0.940 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.050 0.950 28 H 0.280 0.720 29 H 0.118 0.882 30 H 0.093 0.907 31 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.587 3.547 2.152 6.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.033 3.967 3 H 0.078 0.922 4 C -0.188 4.188 5 C -0.086 4.086 6 C -0.265 4.265 7 C 0.134 3.866 8 C -0.488 4.488 9 H 0.097 0.903 10 C -0.141 4.141 11 N -0.416 5.416 12 Si 0.731 3.269 13 H -0.195 1.195 14 H -0.201 1.201 15 H -0.185 1.185 16 C -0.206 4.206 17 C -0.100 4.100 18 C -0.284 4.284 19 C 0.102 3.898 20 O -0.246 6.246 21 H 0.080 0.920 22 H 0.088 0.912 23 H 0.079 0.921 24 H 0.084 0.916 25 H 0.087 0.913 26 H 0.090 0.910 27 H 0.068 0.932 28 H 0.091 0.909 29 H 0.136 0.864 30 H 0.112 0.888 31 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.569 3.305 1.959 6.766 hybrid contribution 0.786 0.005 0.721 1.066 sum -4.783 3.310 2.680 6.404 Atomic orbital electron populations 1.21772 0.93536 1.02687 1.01962 1.22215 0.94006 0.95054 0.85452 0.92230 1.22264 0.98110 1.01108 0.97338 1.20048 0.92033 1.00350 0.96169 1.19558 0.94741 1.19503 0.92718 1.17316 0.89232 0.87098 0.92977 1.19549 1.05999 1.21905 1.01392 0.90300 1.25919 0.98449 0.93377 0.96395 1.69841 1.26838 1.12096 1.32803 0.86345 0.79769 0.80062 0.80759 1.19508 1.20069 1.18467 1.21222 0.99728 1.08118 0.91542 1.20438 0.92907 0.99253 0.97382 1.19790 0.95508 1.19158 0.93983 1.18386 0.80765 0.96893 0.93725 1.85839 1.23461 1.73820 1.41463 0.91955 0.91206 0.92111 0.91552 0.91343 0.90982 0.93187 0.90878 0.86389 0.88842 0.88855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.59 37.16 0.36 -1.55 16 2 C 0.09 1.57 3.42 -26.51 -0.09 1.48 16 3 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 4 C -0.15 -2.65 5.50 -26.48 -0.15 -2.79 16 5 C -0.05 -1.04 4.88 -27.83 -0.14 -1.17 16 6 C -0.26 -6.58 5.81 -103.76 -0.60 -7.18 16 7 C 0.14 3.67 5.56 -106.77 -0.59 3.08 16 8 C -0.46 -12.05 8.11 -37.74 -0.31 -12.36 16 9 H 0.08 1.98 7.02 -52.49 -0.37 1.61 16 10 C 0.08 1.92 5.16 -17.34 -0.09 1.83 16 11 N -0.79 -20.46 10.96 55.55 0.61 -19.85 16 12 Si 0.91 18.53 29.59 -169.99 -5.03 13.50 16 13 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 14 H -0.28 -5.52 7.11 56.52 0.40 -5.11 16 15 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 16 C -0.19 -4.96 8.67 -38.90 -0.34 -5.30 16 17 C -0.08 -1.99 10.01 -39.75 -0.40 -2.38 16 18 C -0.26 -6.43 9.94 -39.03 -0.39 -6.82 16 19 C 0.15 3.57 6.47 -39.25 -0.25 3.32 16 20 O -0.33 -7.23 9.92 -19.40 -0.19 -7.42 16 21 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 22 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 26 H 0.07 1.56 7.33 -51.93 -0.38 1.18 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 29 H 0.12 3.20 6.22 -52.48 -0.33 2.87 16 30 H 0.09 2.01 8.06 -52.49 -0.42 1.59 16 31 H 0.09 2.09 8.06 -52.49 -0.42 1.66 16 LS Contribution 256.89 15.07 3.87 3.87 Total: -1.00 -28.26 256.89 -7.74 -36.00 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -4.01 Total: 3.75 kcal Atomic # 6 Polarization: -26.86 SS G_CDS: -2.99 Total: -29.85 kcal Atomic # 7 Polarization: -20.46 SS G_CDS: 0.61 Total: -19.85 kcal Atomic # 8 Polarization: -7.23 SS G_CDS: -0.19 Total: -7.42 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.03 Total: 13.50 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -28.26 -7.74 -36.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214483997.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.378 kcal (2) G-P(sol) polarization free energy of solvation -28.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds