Wall clock time and date at job start Mon Mar 30 2020 02:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.68471 * 2 1 4 4 C 1.53420 * 109.68278 * 120.53151 * 2 1 3 5 5 C 1.53069 * 108.23517 * 184.21709 * 4 2 1 6 6 C 1.50735 * 109.71721 * 311.96053 * 5 4 2 7 7 C 1.40956 * 118.76699 * 197.68450 * 6 5 4 8 8 C 1.41406 * 120.09081 * 0.31950 * 7 6 5 9 9 H 1.07995 * 120.00193 * 333.78868 * 8 7 6 10 10 C 1.39936 * 119.99499 * 153.79343 * 8 7 6 11 11 N 1.30830 * 120.00287 * 343.84736 * 10 8 7 12 12 Si 1.86807 * 119.99880 * 163.84587 * 10 8 7 13 13 H 1.48496 * 109.47078 * 89.99706 * 12 10 8 14 14 H 1.48496 * 109.46938 * 210.00285 * 12 10 8 15 15 H 1.48498 * 109.46799 * 329.99996 * 12 10 8 16 16 C 1.40595 * 119.80878 * 180.33453 * 7 6 5 17 17 C 1.37669 * 119.69421 * 359.91588 * 16 7 6 18 18 C 1.38346 * 120.23437 * 359.91193 * 17 16 7 19 19 C 1.37743 * 121.55921 * 17.73360 * 6 5 4 20 20 O 1.35891 * 121.78417 * 359.61564 * 19 6 5 21 21 H 1.08996 * 109.47619 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.46786 * 299.99864 * 1 2 3 23 23 H 1.08997 * 109.47067 * 59.99383 * 1 2 3 24 24 H 1.09000 * 109.70952 * 303.93306 * 4 2 1 25 25 H 1.08994 * 109.71056 * 64.56144 * 4 2 1 26 26 H 1.09004 * 109.44896 * 191.87278 * 5 4 2 27 27 H 1.09000 * 109.36413 * 71.99843 * 5 4 2 28 28 H 0.97003 * 119.99948 * 180.02562 * 11 10 8 29 29 H 1.08005 * 120.15218 * 179.97438 * 16 7 6 30 30 H 1.08001 * 119.88525 * 179.97438 * 17 16 7 31 31 H 1.08000 * 119.62212 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8972 1.0262 0.0000 4 6 2.0468 -0.7339 1.2443 5 6 3.5733 -0.6228 1.2664 6 6 4.1288 -0.9785 -0.0889 7 6 5.4950 -1.3080 -0.1969 8 6 6.3174 -1.3079 0.9534 9 1 6.0651 -0.6834 1.7976 10 6 7.4584 -2.1169 0.9978 11 7 7.6020 -3.0931 0.1386 12 14 8.7765 -1.8030 2.2837 13 1 8.4737 -2.5909 3.5054 14 1 10.0993 -2.2112 1.7465 15 1 8.8041 -0.3572 2.6214 16 6 6.0377 -1.6364 -1.4517 17 6 5.2291 -1.6353 -2.5659 18 6 3.8881 -1.3145 -2.4530 19 6 3.3343 -0.9868 -1.2141 20 8 2.0110 -0.6829 -1.1582 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 1.6313 -0.2744 2.1411 25 1 1.7556 -1.7832 1.1996 26 1 3.9761 -1.3061 2.0141 27 1 3.8577 0.3989 1.5181 28 1 8.3927 -3.6541 0.1697 29 1 7.0840 -1.8893 -1.5408 30 1 5.6429 -1.8866 -3.5313 31 1 3.2627 -1.3171 -3.3335 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214483997.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:47 Heat of formation + Delta-G solvation = -55.467659 kcal Electronic energy + Delta-G solvation = -14587.270763 eV Core-core repulsion = 12217.968123 eV Total energy + Delta-G solvation = -2369.302640 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.16203 -38.29231 -35.60858 -34.82385 -32.67946 -31.05742 -28.73826 -27.12258 -24.72846 -23.50882 -22.60939 -20.43437 -19.44688 -17.70437 -17.44477 -16.47483 -16.17798 -15.63065 -15.02468 -14.78209 -14.62878 -14.09537 -13.74661 -13.55574 -13.29241 -13.19337 -12.81726 -12.68751 -12.48032 -12.26999 -11.93930 -11.85258 -11.43803 -11.27708 -10.97596 -10.82706 -9.26815 -8.72991 -8.59150 -6.37455 0.92967 1.10715 1.38177 1.49363 1.54532 2.19816 2.57336 2.74703 3.64244 3.87091 4.00432 4.11931 4.37979 4.49386 4.52105 4.65871 4.72370 4.84001 4.97859 5.01895 5.07665 5.13766 5.23833 5.28704 5.31896 5.38476 5.56253 5.87401 6.03728 6.11209 6.31395 6.56603 6.78329 6.93317 7.13371 8.32941 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.037756 B = 0.009445 C = 0.007795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.416772 B = 2963.783001 C = 3591.132766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.077 3.923 3 H 0.063 0.937 4 C -0.142 4.142 5 C -0.049 4.049 6 C -0.282 4.282 7 C 0.106 3.894 8 C -0.486 4.486 9 H 0.082 0.918 10 C 0.035 3.965 11 N -0.823 5.823 12 Si 0.982 3.018 13 H -0.261 1.261 14 H -0.267 1.267 15 H -0.258 1.258 16 C -0.217 4.217 17 C -0.082 4.082 18 C -0.278 4.278 19 C 0.140 3.860 20 O -0.339 6.339 21 H 0.061 0.939 22 H 0.103 0.897 23 H 0.067 0.933 24 H 0.107 0.893 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.288 0.712 29 H 0.103 0.897 30 H 0.118 0.882 31 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.595 4.282 3.279 8.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.021 3.979 3 H 0.081 0.919 4 C -0.179 4.179 5 C -0.086 4.086 6 C -0.284 4.284 7 C 0.103 3.897 8 C -0.515 4.515 9 H 0.100 0.900 10 C -0.181 4.181 11 N -0.449 5.449 12 Si 0.802 3.198 13 H -0.186 1.186 14 H -0.192 1.192 15 H -0.181 1.181 16 C -0.237 4.237 17 C -0.100 4.100 18 C -0.297 4.297 19 C 0.096 3.904 20 O -0.255 6.255 21 H 0.080 0.920 22 H 0.122 0.878 23 H 0.086 0.914 24 H 0.125 0.875 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.099 0.901 29 H 0.121 0.879 30 H 0.136 0.864 31 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -6.603 4.044 3.079 8.333 hybrid contribution 1.011 -0.212 0.325 1.083 sum -5.592 3.833 3.403 7.586 Atomic orbital electron populations 1.21788 0.89881 1.03364 1.04038 1.22677 0.96718 0.94633 0.83890 0.91916 1.22239 0.95339 1.01113 0.99257 1.20062 0.94669 1.00187 0.93704 1.20009 0.94378 1.19159 0.94841 1.17745 0.90547 0.87873 0.93502 1.19800 1.07349 1.22838 1.01555 0.90034 1.26814 1.00146 0.92532 0.98579 1.69903 1.27756 1.12793 1.34429 0.85208 0.76681 0.79958 0.77911 1.18592 1.19159 1.18132 1.21232 0.99475 1.10381 0.92562 1.20705 0.93065 0.98343 0.97921 1.20117 0.95731 1.18948 0.94928 1.18568 0.81979 0.96235 0.93655 1.85833 1.21765 1.74065 1.43804 0.91965 0.87794 0.91405 0.87475 0.92210 0.92209 0.92514 0.90121 0.87859 0.86393 0.87041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 9.59 71.98 0.69 -2.40 16 2 C 0.08 2.51 3.42 30.74 0.11 2.62 16 3 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 4 C -0.14 -4.68 5.50 30.76 0.17 -4.51 16 5 C -0.05 -2.06 4.88 29.88 0.15 -1.91 16 6 C -0.28 -14.27 5.81 -19.30 -0.11 -14.38 16 7 C 0.11 5.87 5.56 -21.26 -0.12 5.75 16 8 C -0.49 -26.13 8.11 23.46 0.19 -25.94 16 9 H 0.08 4.17 7.02 -2.91 -0.02 4.15 16 10 C 0.03 1.74 5.16 85.25 0.44 2.18 16 11 N -0.82 -43.55 10.96 21.82 0.24 -43.31 16 12 Si 0.98 38.00 29.59 68.60 2.03 40.03 16 13 H -0.26 -9.69 7.11 99.48 0.71 -8.99 16 14 H -0.27 -9.87 7.11 99.48 0.71 -9.17 16 15 H -0.26 -9.74 7.11 99.48 0.71 -9.04 16 16 C -0.22 -11.93 8.67 22.71 0.20 -11.73 16 17 C -0.08 -4.07 10.01 22.16 0.22 -3.84 16 18 C -0.28 -13.50 9.94 22.63 0.22 -13.27 16 19 C 0.14 6.85 6.47 22.48 0.15 7.00 16 20 O -0.34 -14.44 9.92 -92.33 -0.92 -15.36 16 21 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 22 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 23 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.11 2.65 8.14 -2.39 -0.02 2.64 16 25 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 26 H 0.06 2.60 7.33 -2.39 -0.02 2.59 16 27 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.29 13.74 8.30 -92.71 -0.77 12.97 16 29 H 0.10 5.85 6.22 -2.91 -0.02 5.84 16 30 H 0.12 5.07 8.06 -2.91 -0.02 5.05 16 31 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 Total: -1.00 -62.04 256.89 4.77 -57.28 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: 1.11 Total: 21.80 kcal Atomic # 6 Polarization: -62.74 SS G_CDS: 2.30 Total: -60.44 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: 0.24 Total: -43.31 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -0.92 Total: -15.36 kcal Atomic # 14 Polarization: 38.00 SS G_CDS: 2.03 Total: 40.03 kcal Total: -62.04 4.77 -57.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214483997.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.810 kcal (2) G-P(sol) polarization free energy of solvation -62.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds