Wall clock time and date at job start Mon Mar 30 2020 02:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.67483 * 2 1 4 4 C 1.53402 * 109.67790 * 120.54428 * 2 1 3 5 5 C 1.53059 * 108.28469 * 184.63755 * 4 2 1 6 6 C 1.50807 * 109.66631 * 311.76295 * 5 4 2 7 7 C 1.36817 * 118.57874 * 197.65865 * 6 5 4 8 8 C 1.40659 * 120.13547 * 180.19679 * 7 6 5 9 9 C 1.41207 * 120.26223 * 180.02562 * 8 7 6 10 10 H 1.07999 * 119.99990 * 335.19667 * 9 8 7 11 11 C 1.39889 * 120.00136 * 155.20173 * 9 8 7 12 12 N 1.30883 * 120.00132 * 342.31565 * 11 9 8 13 13 Si 1.86800 * 120.00111 * 162.32017 * 11 9 8 14 14 H 1.48499 * 109.47340 * 59.99667 * 13 11 9 15 15 H 1.48496 * 109.47315 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.46973 * 300.00035 * 13 11 9 17 17 C 1.40854 * 119.48080 * 0.07664 * 8 7 6 18 18 C 1.36230 * 119.70516 * 359.86756 * 17 8 7 19 19 C 1.39034 * 121.35821 * 17.74152 * 6 5 4 20 20 O 1.35700 * 121.65842 * 359.61807 * 19 6 5 21 21 H 1.09003 * 109.47085 * 180.51058 * 1 2 3 22 22 H 1.08995 * 109.47125 * 60.51174 * 1 2 3 23 23 H 1.08999 * 109.47247 * 300.50687 * 1 2 3 24 24 H 1.09005 * 109.70234 * 304.34287 * 4 2 1 25 25 H 1.09000 * 109.70118 * 64.94487 * 4 2 1 26 26 H 1.08997 * 109.43263 * 191.70368 * 5 4 2 27 27 H 1.09004 * 109.41095 * 71.80369 * 5 4 2 28 28 H 1.07997 * 119.93102 * 0.21716 * 7 6 5 29 29 H 0.97000 * 119.99743 * 179.97438 * 12 11 9 30 30 H 1.07995 * 120.14835 * 179.88217 * 17 8 7 31 31 H 1.08004 * 119.72627 * 180.02562 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8970 1.0263 0.0000 4 6 2.0466 -0.7341 1.2440 5 6 3.5722 -0.6148 1.2730 6 6 4.1349 -0.9688 -0.0806 7 6 5.4636 -1.2807 -0.1759 8 6 6.0236 -1.6118 -1.4231 9 6 7.3945 -1.9346 -1.5244 10 1 8.0928 -1.5619 -0.7897 11 6 7.8482 -2.7371 -2.5766 12 7 7.0000 -3.4662 -3.2563 13 14 9.6646 -2.7682 -3.0114 14 1 10.4463 -3.2377 -1.8393 15 1 9.8844 -3.6909 -4.1540 16 1 10.1074 -1.4012 -3.3862 17 6 5.2063 -1.6177 -2.5702 18 6 3.8848 -1.3061 -2.4593 19 6 3.3334 -0.9807 -1.2167 20 8 2.0108 -0.6826 -1.1584 21 1 -0.3633 -1.0276 0.0092 22 1 -0.3633 0.5058 -0.8945 23 1 -0.3634 0.5217 0.8854 24 1 1.6252 -0.2792 2.1405 25 1 1.7611 -1.7849 1.1956 26 1 3.9750 -1.2958 2.0227 27 1 3.8509 0.4084 1.5254 28 1 6.0837 -1.2729 0.7082 29 1 7.3146 -4.0224 -3.9861 30 1 5.6254 -1.8684 -3.5335 31 1 3.2577 -1.3110 -3.3386 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214484131.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:51 Heat of formation + Delta-G solvation = -38.872106 kcal Electronic energy + Delta-G solvation = -14353.476970 eV Core-core repulsion = 11984.893968 eV Total energy + Delta-G solvation = -2368.583003 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.46798 -36.57906 -33.65536 -33.45197 -30.95919 -29.33186 -27.64377 -24.82174 -23.26585 -21.87490 -20.75750 -19.20768 -17.14111 -16.62832 -15.22372 -15.08707 -14.52148 -13.85552 -13.52781 -13.12013 -12.88047 -12.45315 -12.28122 -12.10406 -11.78371 -11.65731 -11.33713 -11.16379 -10.99858 -10.63723 -10.43559 -10.00592 -9.93573 -9.62947 -9.24231 -8.89501 -7.45025 -6.94115 -6.69740 -4.22860 2.80316 2.94850 3.09383 3.11917 3.23137 3.97092 4.22729 4.61909 5.07272 5.23276 5.35739 5.54752 5.68342 5.79649 5.83433 5.86980 6.11479 6.15776 6.21863 6.33838 6.46086 6.56697 6.80814 7.05404 7.19534 7.21399 7.53488 7.60552 7.86604 8.03984 8.23885 8.53223 8.71974 8.92947 9.03827 10.25159 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.065579 B = 0.007132 C = 0.006608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.862317 B = 3924.846003 C = 4236.332581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.090 3.910 3 H 0.056 0.944 4 C -0.149 4.149 5 C -0.072 4.072 6 C -0.126 4.126 7 C -0.200 4.200 8 C 0.092 3.908 9 C -0.465 4.465 10 H 0.076 0.924 11 C 0.076 3.924 12 N -0.800 5.800 13 Si 0.908 3.092 14 H -0.266 1.266 15 H -0.279 1.279 16 H -0.264 1.264 17 C -0.134 4.134 18 C -0.121 4.121 19 C 0.000 4.000 20 O -0.327 6.327 21 H 0.061 0.939 22 H 0.061 0.939 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.094 0.906 29 H 0.280 0.720 30 H 0.124 0.876 31 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.930 4.083 4.403 8.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.033 3.967 3 H 0.074 0.926 4 C -0.186 4.186 5 C -0.109 4.109 6 C -0.127 4.127 7 C -0.220 4.220 8 C 0.089 3.911 9 C -0.495 4.495 10 H 0.094 0.906 11 C -0.141 4.141 12 N -0.426 5.426 13 Si 0.732 3.268 14 H -0.191 1.191 15 H -0.204 1.204 16 H -0.189 1.189 17 C -0.154 4.154 18 C -0.140 4.140 19 C -0.044 4.044 20 O -0.243 6.243 21 H 0.080 0.920 22 H 0.080 0.920 23 H 0.086 0.914 24 H 0.086 0.914 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.112 0.888 29 H 0.091 0.909 30 H 0.142 0.858 31 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.074 3.854 4.076 8.268 hybrid contribution 0.978 -0.112 -0.001 0.984 sum -5.096 3.742 4.076 7.522 Atomic orbital electron populations 1.21756 0.93583 1.02664 1.01949 1.22119 0.94077 0.94903 0.85586 0.92601 1.22211 0.96873 1.01567 0.97974 1.20388 0.93948 1.00814 0.95726 1.19063 0.94948 1.06164 0.92546 1.20479 0.93022 1.11618 0.96909 1.17536 0.93425 0.89772 0.90327 1.19408 0.93340 1.27546 1.09175 0.90631 1.25870 0.99931 0.93324 0.94984 1.69832 1.36710 1.18794 1.17273 0.86386 0.82667 0.79057 0.78676 1.19121 1.20405 1.18905 1.20946 0.91919 1.03054 0.99445 1.19996 0.95489 1.04768 0.93726 1.18315 0.81838 1.10431 0.93770 1.85786 1.23076 1.74477 1.40976 0.91967 0.92022 0.91366 0.91423 0.91121 0.91396 0.92045 0.88812 0.90902 0.85791 0.88560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.59 37.16 0.36 -1.47 16 2 C 0.09 1.51 3.41 -26.52 -0.09 1.42 16 3 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 4 C -0.15 -2.36 5.49 -26.49 -0.15 -2.50 16 5 C -0.07 -1.31 5.84 -27.80 -0.16 -1.47 16 6 C -0.13 -2.93 5.72 -104.79 -0.60 -3.52 16 7 C -0.20 -5.02 9.34 -39.18 -0.37 -5.39 16 8 C 0.09 2.49 5.57 -106.87 -0.59 1.90 16 9 C -0.46 -12.50 9.04 -37.84 -0.34 -12.84 16 10 H 0.08 1.95 7.90 -52.49 -0.41 1.53 16 11 C 0.08 1.93 5.14 -17.34 -0.09 1.84 16 12 N -0.80 -21.02 10.97 55.54 0.61 -20.41 16 13 Si 0.91 18.88 29.59 -169.99 -5.03 13.85 16 14 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 15 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 16 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 17 C -0.13 -3.58 8.64 -39.32 -0.34 -3.92 16 18 C -0.12 -3.02 9.87 -39.73 -0.39 -3.41 16 19 C 0.00 -0.01 6.51 -38.71 -0.25 -0.26 16 20 O -0.33 -7.02 9.90 -18.80 -0.19 -7.21 16 21 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 22 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 26 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.09 2.21 8.06 -52.49 -0.42 1.78 16 29 H 0.28 6.71 8.30 -40.82 -0.34 6.38 16 30 H 0.12 3.37 6.19 -52.49 -0.32 3.04 16 31 H 0.10 2.22 8.06 -52.48 -0.42 1.80 16 LS Contribution 259.58 15.07 3.91 3.91 Total: -1.00 -28.50 259.58 -7.81 -36.32 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -4.10 Total: 3.17 kcal Atomic # 6 Polarization: -26.62 SS G_CDS: -3.02 Total: -29.64 kcal Atomic # 7 Polarization: -21.02 SS G_CDS: 0.61 Total: -20.41 kcal Atomic # 8 Polarization: -7.02 SS G_CDS: -0.19 Total: -7.21 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.85 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -28.50 -7.81 -36.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214484131.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.554 kcal (2) G-P(sol) polarization free energy of solvation -28.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds