Wall clock time and date at job start Mon Mar 30 2020 02:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.67483 * 2 1 4 4 C 1.53402 * 109.67790 * 120.54428 * 2 1 3 5 5 C 1.53059 * 108.28469 * 184.63755 * 4 2 1 6 6 C 1.50807 * 109.66631 * 311.76295 * 5 4 2 7 7 C 1.36817 * 118.57874 * 197.65865 * 6 5 4 8 8 C 1.40659 * 120.13547 * 180.19679 * 7 6 5 9 9 C 1.41207 * 120.26223 * 180.02562 * 8 7 6 10 10 H 1.07999 * 119.99990 * 335.19667 * 9 8 7 11 11 C 1.39889 * 120.00136 * 155.20173 * 9 8 7 12 12 N 1.30883 * 120.00132 * 342.31565 * 11 9 8 13 13 Si 1.86800 * 120.00111 * 162.32017 * 11 9 8 14 14 H 1.48499 * 109.47340 * 59.99667 * 13 11 9 15 15 H 1.48496 * 109.47315 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.46973 * 300.00035 * 13 11 9 17 17 C 1.40854 * 119.48080 * 0.07664 * 8 7 6 18 18 C 1.36230 * 119.70516 * 359.86756 * 17 8 7 19 19 C 1.39034 * 121.35821 * 17.74152 * 6 5 4 20 20 O 1.35700 * 121.65842 * 359.61807 * 19 6 5 21 21 H 1.09003 * 109.47085 * 180.51058 * 1 2 3 22 22 H 1.08995 * 109.47125 * 60.51174 * 1 2 3 23 23 H 1.08999 * 109.47247 * 300.50687 * 1 2 3 24 24 H 1.09005 * 109.70234 * 304.34287 * 4 2 1 25 25 H 1.09000 * 109.70118 * 64.94487 * 4 2 1 26 26 H 1.08997 * 109.43263 * 191.70368 * 5 4 2 27 27 H 1.09004 * 109.41095 * 71.80369 * 5 4 2 28 28 H 1.07997 * 119.93102 * 0.21716 * 7 6 5 29 29 H 0.97000 * 119.99743 * 179.97438 * 12 11 9 30 30 H 1.07995 * 120.14835 * 179.88217 * 17 8 7 31 31 H 1.08004 * 119.72627 * 180.02562 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8970 1.0263 0.0000 4 6 2.0466 -0.7341 1.2440 5 6 3.5722 -0.6148 1.2730 6 6 4.1349 -0.9688 -0.0806 7 6 5.4636 -1.2807 -0.1759 8 6 6.0236 -1.6118 -1.4231 9 6 7.3945 -1.9346 -1.5244 10 1 8.0928 -1.5619 -0.7897 11 6 7.8482 -2.7371 -2.5766 12 7 7.0000 -3.4662 -3.2563 13 14 9.6646 -2.7682 -3.0114 14 1 10.4463 -3.2377 -1.8393 15 1 9.8844 -3.6909 -4.1540 16 1 10.1074 -1.4012 -3.3862 17 6 5.2063 -1.6177 -2.5702 18 6 3.8848 -1.3061 -2.4593 19 6 3.3334 -0.9807 -1.2167 20 8 2.0108 -0.6826 -1.1584 21 1 -0.3633 -1.0276 0.0092 22 1 -0.3633 0.5058 -0.8945 23 1 -0.3634 0.5217 0.8854 24 1 1.6252 -0.2792 2.1405 25 1 1.7611 -1.7849 1.1956 26 1 3.9750 -1.2958 2.0227 27 1 3.8509 0.4084 1.5254 28 1 6.0837 -1.2729 0.7082 29 1 7.3146 -4.0224 -3.9861 30 1 5.6254 -1.8684 -3.5335 31 1 3.2577 -1.3110 -3.3386 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214484131.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:50 Heat of formation + Delta-G solvation = -54.250005 kcal Electronic energy + Delta-G solvation = -14354.143806 eV Core-core repulsion = 11984.893968 eV Total energy + Delta-G solvation = -2369.249838 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.12703 -38.38264 -35.41419 -35.07492 -32.50084 -31.24322 -29.20806 -26.69374 -24.72573 -23.42429 -22.66167 -20.83491 -18.92002 -18.41231 -17.05702 -16.73188 -16.03923 -15.41748 -15.14471 -14.74392 -14.56846 -13.98230 -13.86420 -13.72956 -13.21518 -13.02346 -12.92926 -12.83142 -12.69677 -12.23042 -12.01001 -11.72234 -11.48105 -11.34018 -11.02699 -10.72025 -9.37941 -8.85198 -8.60236 -6.23857 0.94295 1.00123 1.38973 1.50191 1.54011 2.22470 2.66861 2.76514 3.63414 3.84048 3.96443 4.04963 4.26592 4.32906 4.55088 4.61668 4.74087 4.86320 4.90365 4.94714 5.00117 5.09984 5.23596 5.28684 5.33034 5.38946 5.64172 5.67292 5.94664 6.06393 6.27251 6.58250 6.85148 6.94598 7.15041 8.36842 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.065579 B = 0.007132 C = 0.006608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.862317 B = 3924.846003 C = 4236.332581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.074 3.926 3 H 0.061 0.939 4 C -0.142 4.142 5 C -0.074 4.074 6 C -0.130 4.130 7 C -0.214 4.214 8 C 0.058 3.942 9 C -0.501 4.501 10 H 0.076 0.924 11 C 0.034 3.966 12 N -0.833 5.833 13 Si 0.984 3.016 14 H -0.259 1.259 15 H -0.268 1.268 16 H -0.261 1.261 17 C -0.156 4.156 18 C -0.135 4.135 19 C 0.000 4.000 20 O -0.341 6.341 21 H 0.060 0.940 22 H 0.062 0.938 23 H 0.104 0.896 24 H 0.112 0.888 25 H 0.061 0.939 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.103 0.897 29 H 0.287 0.713 30 H 0.109 0.891 31 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.642 4.810 5.860 10.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.018 3.982 3 H 0.079 0.921 4 C -0.179 4.179 5 C -0.111 4.111 6 C -0.131 4.131 7 C -0.233 4.233 8 C 0.056 3.944 9 C -0.530 4.530 10 H 0.094 0.906 11 C -0.180 4.180 12 N -0.460 5.460 13 Si 0.805 3.195 14 H -0.183 1.183 15 H -0.193 1.193 16 H -0.185 1.185 17 C -0.176 4.176 18 C -0.154 4.154 19 C -0.044 4.044 20 O -0.258 6.258 21 H 0.079 0.921 22 H 0.081 0.919 23 H 0.123 0.877 24 H 0.130 0.870 25 H 0.080 0.920 26 H 0.097 0.903 27 H 0.098 0.902 28 H 0.121 0.879 29 H 0.098 0.902 30 H 0.127 0.873 31 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.814 4.589 5.548 9.913 hybrid contribution 1.039 -0.288 -0.393 1.148 sum -5.775 4.301 5.155 8.856 Atomic orbital electron populations 1.21781 0.90381 1.03223 1.03834 1.22631 0.96523 0.94689 0.84330 0.92142 1.22217 0.94949 1.01394 0.99344 1.20506 0.95761 1.02049 0.92738 1.19573 0.94198 1.04382 0.94957 1.20719 0.94253 1.11836 0.96516 1.17920 0.94182 0.90891 0.91369 1.19677 0.93611 1.29040 1.10717 0.90587 1.26766 1.04842 0.92209 0.94206 1.69897 1.39018 1.19307 1.17781 0.85231 0.76343 0.79244 0.78723 1.18318 1.19266 1.18515 1.20856 0.92858 1.04952 0.98914 1.20195 0.95213 1.04905 0.95108 1.18439 0.83173 1.09272 0.93525 1.85770 1.21329 1.74939 1.43780 0.92099 0.91884 0.87741 0.86965 0.92004 0.90281 0.90161 0.87923 0.90202 0.87341 0.87584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 9.59 71.98 0.69 -2.28 16 2 C 0.07 2.27 3.41 30.73 0.10 2.37 16 3 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 4 C -0.14 -3.97 5.49 30.75 0.17 -3.80 16 5 C -0.07 -2.49 5.84 29.90 0.17 -2.32 16 6 C -0.13 -5.96 5.72 -19.97 -0.11 -6.08 16 7 C -0.21 -10.87 9.34 22.53 0.21 -10.66 16 8 C 0.06 3.30 5.57 -21.32 -0.12 3.18 16 9 C -0.50 -27.81 9.04 23.40 0.21 -27.60 16 10 H 0.08 4.04 7.90 -2.91 -0.02 4.01 16 11 C 0.03 1.74 5.14 85.23 0.44 2.18 16 12 N -0.83 -45.13 10.97 21.82 0.24 -44.89 16 13 Si 0.98 39.08 29.59 68.60 2.03 41.11 16 14 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 15 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 16 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 17 C -0.16 -8.72 8.64 22.44 0.19 -8.53 16 18 C -0.14 -6.97 9.87 22.18 0.22 -6.75 16 19 C 0.00 -0.01 6.51 22.84 0.15 0.13 16 20 O -0.34 -14.29 9.90 -90.20 -0.89 -15.19 16 21 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 22 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 24 H 0.11 2.20 8.14 -2.38 -0.02 2.18 16 25 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 27 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 28 H 0.10 4.88 8.06 -2.91 -0.02 4.85 16 29 H 0.29 14.09 8.30 -92.71 -0.77 13.32 16 30 H 0.11 6.24 6.19 -2.91 -0.02 6.22 16 31 H 0.11 5.05 8.06 -2.91 -0.02 5.03 16 Total: -1.00 -63.49 259.58 4.81 -58.68 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: 1.11 Total: 20.43 kcal Atomic # 6 Polarization: -62.47 SS G_CDS: 2.33 Total: -60.14 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: 0.24 Total: -44.89 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: -0.89 Total: -15.19 kcal Atomic # 14 Polarization: 39.08 SS G_CDS: 2.03 Total: 41.11 kcal Total: -63.49 4.81 -58.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214484131.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.429 kcal (2) G-P(sol) polarization free energy of solvation -63.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds