Wall clock time and date at job start Mon Mar 30 2020 03:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31961 * 120.61434 * 2 1 4 4 C 1.31981 * 121.08683 * 180.02562 * 3 2 1 5 5 C 1.50701 * 118.81586 * 180.02562 * 4 3 2 6 6 C 1.53777 * 113.61603 * 219.14060 * 5 4 3 7 7 C 1.53962 * 87.01726 * 220.05201 * 6 5 4 8 8 C 1.53775 * 87.11147 * 25.36008 * 7 6 5 9 9 N 1.32010 * 122.36673 * 0.02562 * 4 3 2 10 10 C 1.31933 * 121.08502 * 359.97438 * 9 4 3 11 11 C 1.41072 * 120.60745 * 180.02562 * 2 1 3 12 12 C 1.41417 * 121.05011 * 359.97438 * 11 2 1 13 13 H 1.08000 * 119.99914 * 335.48916 * 12 11 2 14 14 C 1.39963 * 120.00232 * 155.48360 * 12 11 2 15 15 N 1.30814 * 119.99673 * 343.81519 * 14 12 11 16 16 Si 1.86801 * 119.99885 * 163.81161 * 14 12 11 17 17 H 1.48503 * 109.47214 * 0.02562 * 16 14 12 18 18 H 1.48495 * 109.47156 * 120.00329 * 16 14 12 19 19 H 1.48502 * 109.46873 * 240.00421 * 16 14 12 20 20 H 1.08992 * 109.47555 * 269.97965 * 1 2 3 21 21 H 1.09003 * 109.46922 * 29.97865 * 1 2 3 22 22 H 1.09002 * 109.47051 * 149.97349 * 1 2 3 23 23 H 1.09003 * 112.84858 * 350.34192 * 5 4 3 24 24 H 1.09002 * 113.61460 * 334.56145 * 6 5 4 25 25 H 1.08996 * 113.61615 * 105.47298 * 6 5 4 26 26 H 1.09002 * 113.53037 * 270.80681 * 7 6 5 27 27 H 1.08994 * 113.74100 * 139.94911 * 7 6 5 28 28 H 1.08993 * 113.61478 * 220.08789 * 8 7 6 29 29 H 1.09003 * 113.61099 * 89.19228 * 8 7 6 30 30 H 1.08007 * 120.61072 * 180.27516 * 10 9 4 31 31 H 0.97000 * 119.99779 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1790 1.1357 0.0000 4 6 3.4988 1.1466 -0.0005 5 6 4.2142 2.4729 0.0001 6 6 5.4682 2.4969 -0.8897 7 6 6.1430 3.3211 0.2219 8 6 5.1557 2.6644 1.2009 9 7 4.2147 0.0374 -0.0015 10 6 3.6347 -1.1476 -0.0016 11 6 2.2253 -1.2142 -0.0005 12 6 1.5539 -2.4588 -0.0006 13 1 0.5487 -2.5302 0.3878 14 6 2.1921 -3.5982 -0.5040 15 7 3.2577 -3.4740 -1.2525 16 14 1.5221 -5.2962 -0.1070 17 1 0.3172 -5.1647 0.7510 18 1 1.1582 -5.9918 -1.3675 19 1 2.5581 -6.0817 0.6106 20 1 -0.3634 -0.0004 1.0276 21 1 -0.3633 0.8902 -0.5135 22 1 -0.3633 -0.8898 -0.5143 23 1 3.5436 3.3157 -0.1676 24 1 5.9169 1.5147 -1.0385 25 1 5.3323 3.0467 -1.8210 26 1 6.0007 4.3964 0.1137 27 1 7.1828 3.0477 0.4011 28 1 4.7679 3.3492 1.9549 29 1 5.5188 1.7281 1.6248 30 1 4.2279 -2.0502 0.0020 31 1 3.7002 -4.2637 -1.6011 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214491412.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:54 Heat of formation + Delta-G solvation = 37.401144 kcal Electronic energy + Delta-G solvation = -14308.156804 eV Core-core repulsion = 11975.174009 eV Total energy + Delta-G solvation = -2332.982795 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.43922 -37.56522 -34.23305 -32.71099 -30.84926 -27.52884 -26.74731 -25.02370 -24.06042 -21.73855 -20.89116 -18.53136 -17.48472 -16.30526 -15.43419 -15.03936 -14.56707 -13.60476 -13.57926 -13.04267 -12.17512 -12.09886 -11.97759 -11.82478 -11.71945 -11.39483 -11.21453 -11.10107 -10.92313 -10.68383 -10.15810 -9.92641 -9.84439 -9.50968 -9.11474 -8.91230 -7.86335 -7.52637 -7.00058 -4.59026 2.50288 2.83864 2.96445 3.01436 3.04971 3.75956 4.47157 5.16938 5.19050 5.24012 5.38902 5.65765 5.80524 5.89880 6.07127 6.16551 6.25940 6.34216 6.38256 6.50554 6.54681 6.55729 6.76171 6.80020 6.93079 6.96351 7.06446 7.13418 7.65209 7.77556 8.16068 8.38535 8.51395 8.95389 9.89559 9.92989 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.043253 B = 0.008024 C = 0.007103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.196282 B = 3488.603780 C = 3941.211183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.034 3.966 3 N -0.497 5.497 4 C 0.171 3.829 5 C -0.019 4.019 6 C -0.125 4.125 7 C -0.142 4.142 8 C -0.125 4.125 9 N -0.501 5.501 10 C 0.077 3.923 11 C 0.016 3.984 12 C -0.434 4.434 13 H 0.088 0.912 14 C 0.072 3.928 15 N -0.786 5.786 16 Si 0.916 3.084 17 H -0.258 1.258 18 H -0.272 1.272 19 H -0.269 1.269 20 H 0.052 0.948 21 H 0.052 0.948 22 H 0.069 0.931 23 H 0.091 0.909 24 H 0.092 0.908 25 H 0.055 0.945 26 H 0.072 0.928 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.083 0.917 30 H 0.157 0.843 31 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.927 3.066 1.608 3.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.115 4.115 3 N -0.210 5.210 4 C -0.092 4.092 5 C -0.040 4.040 6 C -0.164 4.164 7 C -0.179 4.179 8 C -0.164 4.164 9 N -0.214 5.214 10 C -0.095 4.095 11 C 0.009 3.991 12 C -0.464 4.464 13 H 0.106 0.894 14 C -0.147 4.147 15 N -0.410 5.410 16 Si 0.740 3.260 17 H -0.181 1.181 18 H -0.197 1.197 19 H -0.194 1.194 20 H 0.070 0.930 21 H 0.071 0.929 22 H 0.087 0.913 23 H 0.109 0.891 24 H 0.110 0.890 25 H 0.074 0.926 26 H 0.091 0.909 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.102 0.898 30 H 0.174 0.826 31 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.563 3.862 1.459 4.414 hybrid contribution -0.703 -1.758 0.029 1.894 sum 0.860 2.103 1.487 2.716 Atomic orbital electron populations 1.20255 0.90579 1.01457 1.00642 1.21363 0.95541 0.88225 1.06388 1.67269 1.09883 1.31437 1.12423 1.21579 0.86182 0.92987 1.08493 1.20800 0.93699 0.92715 0.96751 1.22951 0.96492 1.00789 0.96131 1.22822 0.98497 0.98765 0.97858 1.22891 0.96760 1.00602 0.96099 1.67471 1.42393 0.99065 1.12492 1.23319 0.92565 0.93800 0.99854 1.19078 0.94220 0.93957 0.91850 1.19573 1.01478 0.91310 1.34047 0.89420 1.26058 0.94237 1.02110 0.92344 1.69745 1.16506 1.32887 1.21881 0.86118 0.80150 0.80367 0.79388 1.18125 1.19724 1.19427 0.92957 0.92896 0.91254 0.89125 0.88955 0.92586 0.90946 0.91948 0.92467 0.89810 0.82564 0.90213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.49 9.67 36.01 0.35 -1.14 16 2 C 0.03 0.86 6.90 -81.46 -0.56 0.30 16 3 N -0.50 -12.63 10.24 -6.38 -0.07 -12.69 16 4 C 0.17 4.18 6.89 -156.85 -1.08 3.10 16 5 C -0.02 -0.38 4.15 -90.96 -0.38 -0.76 16 6 C -0.13 -2.21 7.57 -25.83 -0.20 -2.40 16 7 C -0.14 -2.09 8.09 -25.83 -0.21 -2.30 16 8 C -0.13 -2.16 7.60 -25.92 -0.20 -2.36 16 9 N -0.50 -12.83 9.21 -10.09 -0.09 -12.92 16 10 C 0.08 2.04 9.99 -16.42 -0.16 1.87 16 11 C 0.02 0.41 5.60 -106.53 -0.60 -0.19 16 12 C -0.43 -10.79 8.25 -37.73 -0.31 -11.10 16 13 H 0.09 2.05 6.95 -52.49 -0.36 1.69 16 14 C 0.07 1.69 5.21 -17.34 -0.09 1.60 16 15 N -0.79 -19.23 10.94 55.55 0.61 -18.62 16 16 Si 0.92 17.41 29.59 -169.99 -5.03 12.38 16 17 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 18 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 19 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 20 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 21 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 22 H 0.07 1.39 6.88 -51.93 -0.36 1.03 16 23 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 24 H 0.09 1.80 7.43 -51.93 -0.39 1.42 16 25 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.08 1.58 7.95 -51.93 -0.41 1.17 16 30 H 0.16 4.16 6.24 -52.48 -0.33 3.84 16 31 H 0.29 6.32 8.30 -40.82 -0.34 5.98 16 LS Contribution 261.94 15.07 3.95 3.95 Total: -1.00 -27.60 261.94 -8.01 -35.61 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -3.94 Total: 5.67 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: -3.43 Total: -13.38 kcal Atomic # 7 Polarization: -44.69 SS G_CDS: 0.45 Total: -44.24 kcal Atomic # 14 Polarization: 17.41 SS G_CDS: -5.03 Total: 12.38 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -27.60 -8.01 -35.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214491412.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.010 kcal (2) G-P(sol) polarization free energy of solvation -27.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds