Wall clock time and date at job start Mon Mar 30 2020 03:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31961 * 120.61434 * 2 1 4 4 C 1.31981 * 121.08683 * 180.02562 * 3 2 1 5 5 C 1.50701 * 118.81586 * 180.02562 * 4 3 2 6 6 C 1.53777 * 113.61603 * 219.14060 * 5 4 3 7 7 C 1.53962 * 87.01726 * 220.05201 * 6 5 4 8 8 C 1.53775 * 87.11147 * 25.36008 * 7 6 5 9 9 N 1.32010 * 122.36673 * 0.02562 * 4 3 2 10 10 C 1.31933 * 121.08502 * 359.97438 * 9 4 3 11 11 C 1.41072 * 120.60745 * 180.02562 * 2 1 3 12 12 C 1.41417 * 121.05011 * 359.97438 * 11 2 1 13 13 H 1.08000 * 119.99914 * 335.48916 * 12 11 2 14 14 C 1.39963 * 120.00232 * 155.48360 * 12 11 2 15 15 N 1.30814 * 119.99673 * 343.81519 * 14 12 11 16 16 Si 1.86801 * 119.99885 * 163.81161 * 14 12 11 17 17 H 1.48503 * 109.47214 * 0.02562 * 16 14 12 18 18 H 1.48495 * 109.47156 * 120.00329 * 16 14 12 19 19 H 1.48502 * 109.46873 * 240.00421 * 16 14 12 20 20 H 1.08992 * 109.47555 * 269.97965 * 1 2 3 21 21 H 1.09003 * 109.46922 * 29.97865 * 1 2 3 22 22 H 1.09002 * 109.47051 * 149.97349 * 1 2 3 23 23 H 1.09003 * 112.84858 * 350.34192 * 5 4 3 24 24 H 1.09002 * 113.61460 * 334.56145 * 6 5 4 25 25 H 1.08996 * 113.61615 * 105.47298 * 6 5 4 26 26 H 1.09002 * 113.53037 * 270.80681 * 7 6 5 27 27 H 1.08994 * 113.74100 * 139.94911 * 7 6 5 28 28 H 1.08993 * 113.61478 * 220.08789 * 8 7 6 29 29 H 1.09003 * 113.61099 * 89.19228 * 8 7 6 30 30 H 1.08007 * 120.61072 * 180.27516 * 10 9 4 31 31 H 0.97000 * 119.99779 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1790 1.1357 0.0000 4 6 3.4988 1.1466 -0.0005 5 6 4.2142 2.4729 0.0001 6 6 5.4682 2.4969 -0.8897 7 6 6.1430 3.3211 0.2219 8 6 5.1557 2.6644 1.2009 9 7 4.2147 0.0374 -0.0015 10 6 3.6347 -1.1476 -0.0016 11 6 2.2253 -1.2142 -0.0005 12 6 1.5539 -2.4588 -0.0006 13 1 0.5487 -2.5302 0.3878 14 6 2.1921 -3.5982 -0.5040 15 7 3.2577 -3.4740 -1.2525 16 14 1.5221 -5.2962 -0.1070 17 1 0.3172 -5.1647 0.7510 18 1 1.1582 -5.9918 -1.3675 19 1 2.5581 -6.0817 0.6106 20 1 -0.3634 -0.0004 1.0276 21 1 -0.3633 0.8902 -0.5135 22 1 -0.3633 -0.8898 -0.5143 23 1 3.5436 3.3157 -0.1676 24 1 5.9169 1.5147 -1.0385 25 1 5.3323 3.0467 -1.8210 26 1 6.0007 4.3964 0.1137 27 1 7.1828 3.0477 0.4011 28 1 4.7679 3.3492 1.9549 29 1 5.5188 1.7281 1.6248 30 1 4.2279 -2.0502 0.0020 31 1 3.7002 -4.2637 -1.6011 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214491412.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:54 Heat of formation + Delta-G solvation = 22.393472 kcal Electronic energy + Delta-G solvation = -14308.807586 eV Core-core repulsion = 11975.174009 eV Total energy + Delta-G solvation = -2333.633577 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.25747 -39.07694 -36.06800 -34.59736 -32.72272 -29.33256 -28.42776 -26.41337 -25.75947 -23.64960 -22.58694 -20.01393 -19.36664 -18.13066 -17.07170 -16.81029 -15.97716 -15.45801 -15.24896 -14.75333 -13.85767 -13.76496 -13.69815 -13.28636 -13.24475 -13.04489 -12.84461 -12.78637 -12.62285 -12.17816 -11.66345 -11.35308 -11.34455 -11.13595 -10.90205 -10.84397 -9.78542 -9.47558 -8.80227 -6.50020 0.66750 0.84951 1.40183 1.50002 1.56972 2.15949 2.66165 3.52000 3.60406 3.77758 3.94083 4.06857 4.17503 4.28432 4.34495 4.74661 4.81910 4.90104 4.91872 4.99734 5.01864 5.04323 5.11240 5.12779 5.16020 5.29494 5.38951 5.64641 5.82443 5.86814 6.26941 6.45915 6.63934 7.00389 7.94879 8.16652 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.043253 B = 0.008024 C = 0.007103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.196282 B = 3488.603780 C = 3941.211183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.019 3.981 3 N -0.510 5.510 4 C 0.155 3.845 5 C -0.034 4.034 6 C -0.127 4.127 7 C -0.116 4.116 8 C -0.123 4.123 9 N -0.509 5.509 10 C 0.047 3.953 11 C -0.012 4.012 12 C -0.452 4.452 13 H 0.099 0.901 14 C 0.033 3.967 15 N -0.816 5.816 16 Si 0.994 3.006 17 H -0.250 1.250 18 H -0.265 1.265 19 H -0.265 1.265 20 H 0.070 0.930 21 H 0.065 0.935 22 H 0.073 0.927 23 H 0.100 0.900 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.103 0.897 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.060 0.940 30 H 0.146 0.854 31 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.425 3.345 1.911 3.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.132 4.132 3 N -0.224 5.224 4 C -0.108 4.108 5 C -0.054 4.054 6 C -0.165 4.165 7 C -0.154 4.154 8 C -0.162 4.162 9 N -0.223 5.223 10 C -0.124 4.124 11 C -0.019 4.019 12 C -0.482 4.482 13 H 0.117 0.883 14 C -0.184 4.184 15 N -0.441 5.441 16 Si 0.814 3.186 17 H -0.173 1.173 18 H -0.189 1.189 19 H -0.190 1.190 20 H 0.088 0.912 21 H 0.084 0.916 22 H 0.092 0.908 23 H 0.119 0.881 24 H 0.084 0.916 25 H 0.089 0.911 26 H 0.121 0.879 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.079 0.921 30 H 0.163 0.837 31 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.077 4.152 1.759 4.636 hybrid contribution -0.544 -1.818 -0.101 1.900 sum 0.533 2.334 1.659 2.912 Atomic orbital electron populations 1.20283 0.87661 1.02297 1.02011 1.22101 0.97697 0.87975 1.05379 1.67418 1.10347 1.31481 1.13105 1.22533 0.86462 0.94431 1.07382 1.21116 0.94414 0.90566 0.99337 1.22901 0.95637 1.00395 0.97606 1.22756 0.98434 0.99802 0.94366 1.22834 0.96851 1.00325 0.96144 1.67493 1.42706 0.99251 1.12802 1.23261 0.93144 0.93967 1.02011 1.19418 0.94318 0.95311 0.92838 1.19881 1.02179 0.91610 1.34496 0.88335 1.27010 0.94165 1.05893 0.91365 1.69798 1.17510 1.34608 1.22195 0.84960 0.79567 0.74764 0.79336 1.17333 1.18941 1.18959 0.91161 0.91580 0.90788 0.88143 0.91623 0.91114 0.87885 0.90473 0.90622 0.92146 0.83704 0.89288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.64 9.67 71.24 0.69 -1.95 16 2 C 0.02 0.95 6.90 43.24 0.30 1.24 16 3 N -0.51 -26.13 10.24 -174.10 -1.78 -27.91 16 4 C 0.16 7.73 6.89 138.63 0.95 8.69 16 5 C -0.03 -1.33 4.15 -11.02 -0.05 -1.38 16 6 C -0.13 -4.35 7.57 31.18 0.24 -4.11 16 7 C -0.12 -3.11 8.09 31.18 0.25 -2.86 16 8 C -0.12 -4.08 7.60 31.12 0.24 -3.85 16 9 N -0.51 -27.00 9.21 -185.83 -1.71 -28.71 16 10 C 0.05 2.60 9.99 85.38 0.85 3.46 16 11 C -0.01 -0.66 5.60 -21.10 -0.12 -0.78 16 12 C -0.45 -22.62 8.25 23.47 0.19 -22.42 16 13 H 0.10 4.56 6.95 -2.91 -0.02 4.54 16 14 C 0.03 1.53 5.21 85.26 0.44 1.97 16 15 N -0.82 -40.58 10.94 21.83 0.24 -40.34 16 16 Si 0.99 34.95 29.59 68.60 2.03 36.98 16 17 H -0.25 -8.44 7.11 99.48 0.71 -7.73 16 18 H -0.26 -8.96 7.11 99.48 0.71 -8.25 16 19 H -0.26 -9.08 7.11 99.48 0.71 -8.37 16 20 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 21 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 22 H 0.07 2.89 6.88 -2.39 -0.02 2.87 16 23 H 0.10 3.68 8.14 -2.39 -0.02 3.66 16 24 H 0.07 2.59 7.43 -2.39 -0.02 2.58 16 25 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 26 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 27 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.08 2.20 8.14 -2.39 -0.02 2.19 16 29 H 0.06 2.28 7.95 -2.39 -0.02 2.26 16 30 H 0.15 8.14 6.24 -2.91 -0.02 8.12 16 31 H 0.30 13.15 8.30 -92.71 -0.77 12.38 16 Total: -1.00 -60.46 261.94 3.89 -56.57 By element: Atomic # 1 Polarization: 24.28 SS G_CDS: 1.12 Total: 25.41 kcal Atomic # 6 Polarization: -25.99 SS G_CDS: 3.99 Total: -21.99 kcal Atomic # 7 Polarization: -93.71 SS G_CDS: -3.26 Total: -96.97 kcal Atomic # 14 Polarization: 34.95 SS G_CDS: 2.03 Total: 36.98 kcal Total: -60.46 3.89 -56.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214491412.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.967 kcal (2) G-P(sol) polarization free energy of solvation -60.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds