Wall clock time and date at job start Mon Mar 30 2020 02:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35906 * 116.99649 * 2 1 4 4 C 1.38745 * 120.09329 * 0.02562 * 3 2 1 5 5 C 1.38004 * 119.87790 * 179.97438 * 4 3 2 6 6 C 1.38355 * 120.35831 * 0.02562 * 5 4 3 7 7 C 1.38498 * 119.90431 * 359.95882 * 6 5 4 8 8 C 1.38413 * 119.86711 * 0.04933 * 7 6 5 9 9 C 1.51376 * 109.79076 * 180.02562 * 7 6 5 10 10 C 1.54340 * 105.17003 * 342.82679 * 9 7 6 11 11 C 1.51390 * 130.48132 * 180.02562 * 6 5 4 12 12 H 1.08992 * 110.30509 * 316.15832 * 11 6 5 13 13 C 1.50702 * 110.30110 * 78.21668 * 11 6 5 14 14 H 1.07998 * 119.99976 * 24.92309 * 13 11 6 15 15 C 1.37875 * 119.99689 * 204.92337 * 13 11 6 16 16 N 1.31521 * 120.00322 * 353.65341 * 15 13 11 17 17 Si 1.86798 * 120.00207 * 173.65757 * 15 13 11 18 18 H 1.48491 * 109.47496 * 179.97438 * 17 15 13 19 19 H 1.48499 * 109.46900 * 299.99990 * 17 15 13 20 20 H 1.48506 * 109.47263 * 59.99547 * 17 15 13 21 21 H 1.08999 * 109.47391 * 299.99457 * 1 2 3 22 22 H 1.08997 * 109.47642 * 59.99967 * 1 2 3 23 23 H 1.08999 * 109.46994 * 179.97438 * 1 2 3 24 24 H 1.07998 * 120.06221 * 359.97438 * 4 3 2 25 25 H 1.08008 * 119.85333 * 180.02562 * 5 4 3 26 26 H 1.08007 * 119.90879 * 179.97438 * 8 7 6 27 27 H 1.08997 * 110.30606 * 223.90230 * 9 7 6 28 28 H 1.09001 * 110.38626 * 101.79154 * 9 7 6 29 29 H 1.09002 * 110.82420 * 268.13854 * 10 9 7 30 30 H 1.09000 * 110.99236 * 144.67148 * 10 9 7 31 31 H 0.97003 * 119.99227 * 354.66522 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2921 2.3758 0.0005 5 6 1.9231 3.6031 0.0011 6 6 3.3046 3.6790 0.0005 7 6 4.0599 2.5181 0.0003 8 6 3.4298 1.2858 -0.0004 9 6 5.5333 2.8653 0.0004 10 6 5.6000 4.3433 -0.4392 11 6 4.2227 4.8827 0.0014 12 1 3.8656 5.6313 -0.7056 13 6 4.3110 5.4720 1.3857 14 1 4.1193 4.8526 2.2494 15 6 4.6364 6.8017 1.5493 16 7 4.9914 7.5247 0.5096 17 14 4.5732 7.5766 3.2478 18 1 4.9660 9.0056 3.1549 19 1 3.1931 7.4761 3.7867 20 1 5.5109 6.8638 4.1523 21 1 -0.3634 0.5137 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 0.2134 2.3221 0.0005 25 1 1.3359 4.5096 0.0019 26 1 4.0182 0.3800 -0.0010 27 1 6.0704 2.2353 -0.7086 28 1 5.9508 2.7490 1.0005 29 1 5.7187 4.4212 -1.5199 30 1 6.4046 4.8680 0.0760 31 1 5.0993 7.1054 -0.3585 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238356381.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:34 Heat of formation + Delta-G solvation = -27.010700 kcal Electronic energy + Delta-G solvation = -14311.333085 eV Core-core repulsion = 11943.264432 eV Total energy + Delta-G solvation = -2368.068654 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.88068 -38.09618 -34.56909 -32.43303 -30.64673 -27.87182 -27.63874 -26.03891 -23.69298 -22.06829 -20.16924 -19.81458 -17.30862 -16.68799 -15.85740 -15.49359 -14.76718 -14.19546 -13.86935 -13.70825 -13.01172 -12.82519 -12.54401 -12.15964 -11.65127 -11.42160 -11.13715 -10.92683 -10.61181 -10.43121 -10.27812 -10.10494 -10.03965 -9.55769 -8.73793 -8.35889 -8.21425 -7.31676 -6.36566 -4.09137 1.90335 2.10452 3.43541 3.44459 3.53427 3.63571 4.35413 4.55044 5.09416 5.22201 5.23209 5.33679 5.39807 5.51157 5.61341 5.71577 5.97615 6.01031 6.06183 6.28896 6.41070 6.61949 6.76351 6.83456 6.93048 7.03317 7.19593 7.28508 7.41464 7.60991 7.84864 8.18571 8.43182 8.83906 9.61327 11.00106 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.039192 B = 0.007963 C = 0.007226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.267707 B = 3515.565081 C = 3874.146464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.325 6.325 3 C 0.098 3.902 4 C -0.209 4.209 5 C -0.077 4.077 6 C -0.075 4.075 7 C -0.071 4.071 8 C -0.144 4.144 9 C -0.069 4.069 10 C -0.117 4.117 11 C 0.064 3.936 12 H 0.041 0.959 13 C -0.581 4.581 14 H 0.049 0.951 15 C 0.022 3.978 16 N -0.910 5.910 17 Si 1.065 2.935 18 H -0.282 1.282 19 H -0.288 1.288 20 H -0.288 1.288 21 H 0.051 0.949 22 H 0.051 0.949 23 H 0.092 0.908 24 H 0.119 0.881 25 H 0.118 0.882 26 H 0.118 0.882 27 H 0.057 0.943 28 H 0.076 0.924 29 H 0.041 0.959 30 H 0.071 0.929 31 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.535 -10.598 -1.431 12.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.239 6.239 3 C 0.054 3.946 4 C -0.228 4.228 5 C -0.096 4.096 6 C -0.075 4.075 7 C -0.071 4.071 8 C -0.162 4.162 9 C -0.106 4.106 10 C -0.155 4.155 11 C 0.045 3.955 12 H 0.059 0.941 13 C -0.619 4.619 14 H 0.068 0.932 15 C -0.182 4.182 16 N -0.545 5.545 17 Si 0.893 3.107 18 H -0.208 1.208 19 H -0.215 1.215 20 H -0.214 1.214 21 H 0.070 0.930 22 H 0.069 0.931 23 H 0.111 0.889 24 H 0.137 0.863 25 H 0.136 0.864 26 H 0.136 0.864 27 H 0.076 0.924 28 H 0.094 0.906 29 H 0.060 0.940 30 H 0.090 0.910 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.270 -9.337 -0.621 10.739 hybrid contribution -0.582 -1.425 -0.722 1.700 sum -5.851 -10.762 -1.343 12.323 Atomic orbital electron populations 1.22924 0.79279 1.03043 1.01143 1.85984 1.20648 1.27529 1.89780 1.18632 0.91985 0.83639 1.00364 1.20976 0.99070 0.92344 1.10390 1.20365 0.94039 0.96440 0.98710 1.21168 0.93214 0.97128 0.96025 1.20588 0.96848 0.92033 0.97642 1.19665 0.90956 0.97334 1.08278 1.20941 0.90902 0.97575 1.01140 1.22535 1.01240 0.93756 0.97972 1.18510 0.88554 0.90445 0.97975 0.94095 1.21763 1.51637 0.97516 0.90972 0.93240 1.25816 0.93490 0.94100 1.04816 1.70785 1.43326 1.39117 1.01292 0.83605 0.76565 0.76232 0.74292 1.20757 1.21461 1.21414 0.92993 0.93069 0.88909 0.86303 0.86442 0.86434 0.92402 0.90597 0.94049 0.90988 0.91815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.81 101.05 0.99 1.35 16 2 O -0.33 -5.18 10.50 -19.44 -0.20 -5.38 16 3 C 0.10 1.77 6.68 -39.26 -0.26 1.50 16 4 C -0.21 -3.73 9.04 -39.48 -0.36 -4.09 16 5 C -0.08 -1.59 10.02 -39.62 -0.40 -1.98 16 6 C -0.07 -1.70 5.44 -104.14 -0.57 -2.26 16 7 C -0.07 -1.47 6.14 -104.13 -0.64 -2.11 16 8 C -0.14 -2.71 9.98 -39.39 -0.39 -3.11 16 9 C -0.07 -1.35 6.76 -26.85 -0.18 -1.53 16 10 C -0.12 -2.60 6.46 -25.33 -0.16 -2.76 16 11 C 0.06 1.59 2.38 -91.88 -0.22 1.37 16 12 H 0.04 1.10 7.09 -51.93 -0.37 0.73 16 13 C -0.58 -16.04 8.24 -34.44 -0.28 -16.32 16 14 H 0.05 1.40 7.82 -52.49 -0.41 0.99 16 15 C 0.02 0.62 5.45 -17.82 -0.10 0.52 16 16 N -0.91 -26.75 13.57 55.43 0.75 -26.00 16 17 Si 1.06 24.91 29.91 -169.99 -5.08 19.82 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 21 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 22 H 0.05 0.53 7.67 -51.93 -0.40 0.13 16 23 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.12 1.75 6.31 -52.49 -0.33 1.42 16 25 H 0.12 2.31 8.06 -52.48 -0.42 1.89 16 26 H 0.12 1.97 8.06 -52.48 -0.42 1.55 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 29 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.07 1.69 7.89 -51.93 -0.41 1.28 16 31 H 0.27 7.88 6.83 -40.82 -0.28 7.60 16 LS Contribution 261.66 15.07 3.94 3.94 Total: -1.00 -30.18 261.66 -7.09 -37.27 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -3.93 Total: -0.23 kcal Atomic # 6 Polarization: -26.85 SS G_CDS: -2.57 Total: -29.42 kcal Atomic # 7 Polarization: -26.75 SS G_CDS: 0.75 Total: -26.00 kcal Atomic # 8 Polarization: -5.18 SS G_CDS: -0.20 Total: -5.38 kcal Atomic # 14 Polarization: 24.91 SS G_CDS: -5.08 Total: 19.82 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -30.18 -7.09 -37.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238356381.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.254 kcal (2) G-P(sol) polarization free energy of solvation -30.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds