Wall clock time and date at job start Mon Mar 30 2020 02:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35906 * 116.99649 * 2 1 4 4 C 1.38745 * 120.09329 * 0.02562 * 3 2 1 5 5 C 1.38004 * 119.87790 * 179.97438 * 4 3 2 6 6 C 1.38355 * 120.35831 * 0.02562 * 5 4 3 7 7 C 1.38498 * 119.90431 * 359.95882 * 6 5 4 8 8 C 1.38413 * 119.86711 * 0.04933 * 7 6 5 9 9 C 1.51376 * 109.79076 * 180.02562 * 7 6 5 10 10 C 1.54340 * 105.17003 * 342.82679 * 9 7 6 11 11 C 1.51390 * 130.48132 * 180.02562 * 6 5 4 12 12 H 1.08992 * 110.30509 * 316.15832 * 11 6 5 13 13 C 1.50702 * 110.30110 * 78.21668 * 11 6 5 14 14 H 1.07998 * 119.99976 * 24.92309 * 13 11 6 15 15 C 1.37875 * 119.99689 * 204.92337 * 13 11 6 16 16 N 1.31521 * 120.00322 * 353.65341 * 15 13 11 17 17 Si 1.86798 * 120.00207 * 173.65757 * 15 13 11 18 18 H 1.48491 * 109.47496 * 179.97438 * 17 15 13 19 19 H 1.48499 * 109.46900 * 299.99990 * 17 15 13 20 20 H 1.48506 * 109.47263 * 59.99547 * 17 15 13 21 21 H 1.08999 * 109.47391 * 299.99457 * 1 2 3 22 22 H 1.08997 * 109.47642 * 59.99967 * 1 2 3 23 23 H 1.08999 * 109.46994 * 179.97438 * 1 2 3 24 24 H 1.07998 * 120.06221 * 359.97438 * 4 3 2 25 25 H 1.08008 * 119.85333 * 180.02562 * 5 4 3 26 26 H 1.08007 * 119.90879 * 179.97438 * 8 7 6 27 27 H 1.08997 * 110.30606 * 223.90230 * 9 7 6 28 28 H 1.09001 * 110.38626 * 101.79154 * 9 7 6 29 29 H 1.09002 * 110.82420 * 268.13854 * 10 9 7 30 30 H 1.09000 * 110.99236 * 144.67148 * 10 9 7 31 31 H 0.97003 * 119.99227 * 354.66522 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2921 2.3758 0.0005 5 6 1.9231 3.6031 0.0011 6 6 3.3046 3.6790 0.0005 7 6 4.0599 2.5181 0.0003 8 6 3.4298 1.2858 -0.0004 9 6 5.5333 2.8653 0.0004 10 6 5.6000 4.3433 -0.4392 11 6 4.2227 4.8827 0.0014 12 1 3.8656 5.6313 -0.7056 13 6 4.3110 5.4720 1.3857 14 1 4.1193 4.8526 2.2494 15 6 4.6364 6.8017 1.5493 16 7 4.9914 7.5247 0.5096 17 14 4.5732 7.5766 3.2478 18 1 4.9660 9.0056 3.1549 19 1 3.1931 7.4761 3.7867 20 1 5.5109 6.8638 4.1523 21 1 -0.3634 0.5137 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 0.2134 2.3221 0.0005 25 1 1.3359 4.5096 0.0019 26 1 4.0182 0.3800 -0.0010 27 1 6.0704 2.2353 -0.7086 28 1 5.9508 2.7490 1.0005 29 1 5.7187 4.4212 -1.5199 30 1 6.4046 4.8680 0.0760 31 1 5.0993 7.1054 -0.3585 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238356381.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:34 Heat of formation + Delta-G solvation = -44.025794 kcal Electronic energy + Delta-G solvation = -14312.070915 eV Core-core repulsion = 11943.264432 eV Total energy + Delta-G solvation = -2368.806483 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.33657 -39.52400 -36.25370 -34.33796 -32.21113 -29.35205 -29.11797 -27.49728 -25.65616 -23.61949 -21.63279 -21.58784 -19.00292 -18.34825 -17.25540 -16.62671 -16.36138 -15.93157 -15.58783 -15.35844 -14.60558 -14.30449 -14.08309 -13.53818 -13.37756 -12.83622 -12.73132 -12.60477 -12.17359 -12.11051 -11.97973 -11.83137 -11.65559 -11.34180 -10.71321 -10.44549 -9.71015 -8.94297 -8.53107 -6.31266 0.40020 0.56960 1.52780 1.59489 1.79578 2.36170 2.56154 2.85237 3.18116 3.73237 3.88726 4.00797 4.22063 4.32404 4.38514 4.41533 4.47202 4.56881 4.70116 4.77397 4.81365 5.00540 5.08613 5.18443 5.23553 5.37816 5.42135 5.64892 5.82709 5.93927 6.08767 6.22376 6.50197 6.64404 7.46300 8.78144 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.039192 B = 0.007963 C = 0.007226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.267707 B = 3515.565081 C = 3874.146464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.332 6.332 3 C 0.108 3.892 4 C -0.202 4.202 5 C -0.091 4.091 6 C -0.115 4.115 7 C -0.077 4.077 8 C -0.149 4.149 9 C -0.061 4.061 10 C -0.112 4.112 11 C 0.057 3.943 12 H 0.007 0.993 13 C -0.587 4.587 14 H 0.037 0.963 15 C -0.027 4.027 16 N -0.935 5.935 17 Si 1.109 2.891 18 H -0.282 1.282 19 H -0.275 1.275 20 H -0.271 1.271 21 H 0.060 0.940 22 H 0.062 0.938 23 H 0.124 0.876 24 H 0.153 0.847 25 H 0.114 0.886 26 H 0.141 0.859 27 H 0.091 0.909 28 H 0.074 0.926 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.635 -12.808 -0.874 14.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.246 6.246 3 C 0.063 3.937 4 C -0.220 4.220 5 C -0.109 4.109 6 C -0.116 4.116 7 C -0.077 4.077 8 C -0.167 4.167 9 C -0.098 4.098 10 C -0.151 4.151 11 C 0.038 3.962 12 H 0.025 0.975 13 C -0.625 4.625 14 H 0.056 0.944 15 C -0.225 4.225 16 N -0.572 5.572 17 Si 0.931 3.069 18 H -0.208 1.208 19 H -0.201 1.201 20 H -0.197 1.197 21 H 0.078 0.922 22 H 0.081 0.919 23 H 0.142 0.858 24 H 0.171 0.829 25 H 0.132 0.868 26 H 0.159 0.841 27 H 0.110 0.890 28 H 0.093 0.907 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.383 -11.578 -0.072 13.222 hybrid contribution -0.373 -0.872 -0.945 1.339 sum -6.756 -12.450 -1.017 14.202 Atomic orbital electron populations 1.23331 0.76596 1.05583 1.02065 1.85998 1.23344 1.26076 1.89170 1.18748 0.92008 0.84557 0.98388 1.21232 1.00788 0.91097 1.08917 1.20507 0.93444 0.97722 0.99238 1.21064 0.94221 0.96655 0.99620 1.20669 0.96919 0.92219 0.97941 1.19899 0.91838 0.97288 1.07682 1.20883 0.91151 0.95902 1.01884 1.22368 0.98739 0.95541 0.98406 1.18454 0.90817 0.91007 0.95929 0.97486 1.22004 1.50831 0.97704 0.91964 0.94443 1.27153 0.92814 0.95079 1.07442 1.70892 1.45542 1.39354 1.01418 0.83035 0.77559 0.75519 0.70763 1.20764 1.20052 1.19659 0.92185 0.91933 0.85773 0.82945 0.86800 0.84128 0.89046 0.90720 0.92925 0.93144 0.93021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.81 113.37 1.11 1.45 16 2 O -0.33 -9.28 10.50 -92.49 -0.97 -10.25 16 3 C 0.11 3.58 6.68 22.48 0.15 3.73 16 4 C -0.20 -6.73 9.04 22.34 0.20 -6.53 16 5 C -0.09 -3.71 10.02 22.24 0.22 -3.48 16 6 C -0.12 -5.27 5.44 -19.56 -0.11 -5.38 16 7 C -0.08 -3.13 6.14 -19.55 -0.12 -3.25 16 8 C -0.15 -5.25 9.98 22.40 0.22 -5.02 16 9 C -0.06 -2.36 6.76 30.52 0.21 -2.16 16 10 C -0.11 -5.11 6.46 31.50 0.20 -4.91 16 11 C 0.06 2.94 2.38 -11.61 -0.03 2.91 16 12 H 0.01 0.40 7.09 -2.39 -0.02 0.38 16 13 C -0.59 -33.40 8.24 25.60 0.21 -33.19 16 14 H 0.04 2.17 7.82 -2.91 -0.02 2.14 16 15 C -0.03 -1.52 5.45 84.65 0.46 -1.06 16 16 N -0.94 -56.89 13.57 21.45 0.29 -56.60 16 17 Si 1.11 50.60 29.91 68.60 2.05 52.65 16 18 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 19 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 20 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 21 H 0.06 1.02 7.66 -2.39 -0.02 1.00 16 22 H 0.06 1.02 7.67 -2.39 -0.02 1.00 16 23 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.15 3.93 6.31 -2.91 -0.02 3.92 16 25 H 0.11 4.57 8.06 -2.91 -0.02 4.54 16 26 H 0.14 4.25 8.06 -2.91 -0.02 4.22 16 27 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 28 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 29 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.05 2.45 7.89 -2.39 -0.02 2.44 16 31 H 0.26 15.90 6.83 -92.71 -0.63 15.27 16 Total: -1.00 -66.26 261.66 5.36 -60.90 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: 1.25 Total: 10.19 kcal Atomic # 6 Polarization: -59.63 SS G_CDS: 2.74 Total: -56.89 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: 0.29 Total: -56.60 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: -0.97 Total: -10.25 kcal Atomic # 14 Polarization: 50.60 SS G_CDS: 2.05 Total: 52.65 kcal Total: -66.26 5.36 -60.90 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238356381.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.878 kcal (2) G-P(sol) polarization free energy of solvation -66.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds