Wall clock time and date at job start Mon Mar 30 2020 02:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35898 * 117.00186 * 2 1 4 4 C 1.38750 * 120.08708 * 0.02562 * 3 2 1 5 5 C 1.38009 * 119.87388 * 179.97438 * 4 3 2 6 6 C 1.38541 * 120.29154 * 0.02562 * 5 4 3 7 7 C 1.38260 * 119.94073 * 359.97438 * 6 5 4 8 8 C 1.38413 * 119.90003 * 359.97438 * 7 6 5 9 9 C 1.51380 * 109.75697 * 180.02562 * 7 6 5 10 10 C 1.54342 * 105.16837 * 342.80982 * 9 7 6 11 11 C 1.51690 * 130.23938 * 179.81171 * 6 5 4 12 12 H 1.09004 * 110.25788 * 78.28466 * 11 6 5 13 13 C 1.50707 * 110.49440 * 316.03850 * 11 6 5 14 14 H 1.07998 * 119.99796 * 279.13714 * 13 11 6 15 15 C 1.37875 * 119.99712 * 99.13769 * 13 11 6 16 16 N 1.31520 * 119.99782 * 183.58800 * 15 13 11 17 17 Si 1.86795 * 120.00400 * 3.59166 * 15 13 11 18 18 H 1.48505 * 109.47336 * 85.52010 * 17 15 13 19 19 H 1.48501 * 109.47463 * 205.52144 * 17 15 13 20 20 H 1.48502 * 109.47154 * 325.52263 * 17 15 13 21 21 H 1.08994 * 109.47788 * 59.99635 * 1 2 3 22 22 H 1.09004 * 109.46757 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.46899 * 299.98868 * 1 2 3 24 24 H 1.07997 * 120.06722 * 359.97438 * 4 3 2 25 25 H 1.08007 * 119.84961 * 179.97438 * 5 4 3 26 26 H 1.08002 * 119.91228 * 180.02562 * 8 7 6 27 27 H 1.08997 * 110.30229 * 223.88737 * 9 7 6 28 28 H 1.08997 * 110.30278 * 101.73056 * 9 7 6 29 29 H 1.08999 * 110.82240 * 144.59048 * 10 9 7 30 30 H 1.09003 * 110.82279 * 267.93836 * 10 9 7 31 31 H 0.96999 * 120.00241 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2921 2.3757 0.0005 5 6 1.9233 3.6030 0.0011 6 6 3.3067 3.6773 0.0005 7 6 4.0601 2.5180 0.0000 8 6 3.4299 1.2856 0.0005 9 6 5.5335 2.8652 0.0001 10 6 5.6002 4.3432 -0.4395 11 6 4.2230 4.8862 -0.0029 12 1 4.2858 5.3150 0.9973 13 6 3.7318 5.9179 -0.9854 14 1 3.9526 5.8102 -2.0371 15 6 3.0005 6.9992 -0.5416 16 7 2.5117 7.8618 -1.4058 17 14 2.7040 7.2393 1.2870 18 1 3.8532 7.9665 1.8835 19 1 1.4614 8.0273 1.4878 20 1 2.5618 5.9148 1.9434 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8901 24 1 0.2135 2.3221 0.0005 25 1 1.3361 4.5095 0.0011 26 1 4.0182 0.3799 0.0005 27 1 6.0706 2.2352 -0.7088 28 1 5.9493 2.7492 1.0010 29 1 6.4046 4.8656 0.0784 30 1 5.7224 4.4210 -1.5198 31 1 1.9969 8.6223 -1.0937 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238360124.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:36 Heat of formation + Delta-G solvation = -21.090224 kcal Electronic energy + Delta-G solvation = -14412.431233 eV Core-core repulsion = 12044.619311 eV Total energy + Delta-G solvation = -2367.811922 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.83981 -38.06481 -34.33949 -32.54414 -30.74062 -28.27319 -27.76106 -26.43597 -23.44129 -22.07019 -20.15883 -19.39836 -17.17411 -17.01505 -15.75804 -15.44425 -14.96171 -14.41921 -13.96456 -13.47073 -12.89314 -12.83423 -12.53531 -12.11192 -12.03777 -11.50422 -11.21690 -11.05386 -10.80308 -10.52295 -10.40656 -10.05504 -9.69589 -9.48670 -9.32046 -8.59153 -8.16849 -7.28319 -6.11874 -4.10682 1.95693 2.15971 3.25072 3.34133 3.37602 3.57976 4.37660 4.42363 5.11841 5.17013 5.28494 5.29716 5.45074 5.55719 5.61861 5.71753 5.84983 6.02435 6.10475 6.18223 6.43618 6.56178 6.58381 6.76571 6.89255 6.96668 7.14622 7.28675 7.36537 7.51721 7.74503 7.90948 8.48782 8.94033 9.50413 11.01082 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.030678 B = 0.010038 C = 0.008394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.477028 B = 2788.747338 C = 3334.808673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.325 6.325 3 C 0.098 3.902 4 C -0.210 4.210 5 C -0.061 4.061 6 C -0.082 4.082 7 C -0.082 4.082 8 C -0.144 4.144 9 C -0.079 4.079 10 C -0.108 4.108 11 C 0.044 3.956 12 H 0.048 0.952 13 C -0.502 4.502 14 H 0.075 0.925 15 C 0.072 3.928 16 N -0.898 5.898 17 Si 0.868 3.132 18 H -0.274 1.274 19 H -0.288 1.288 20 H -0.261 1.261 21 H 0.052 0.948 22 H 0.092 0.908 23 H 0.051 0.949 24 H 0.119 0.881 25 H 0.121 0.879 26 H 0.117 0.883 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.910 -11.633 4.485 12.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.240 6.240 3 C 0.054 3.946 4 C -0.229 4.229 5 C -0.079 4.079 6 C -0.083 4.083 7 C -0.082 4.082 8 C -0.163 4.163 9 C -0.116 4.116 10 C -0.146 4.146 11 C 0.025 3.975 12 H 0.065 0.935 13 C -0.539 4.539 14 H 0.094 0.906 15 C -0.130 4.130 16 N -0.535 5.535 17 Si 0.695 3.305 18 H -0.200 1.200 19 H -0.214 1.214 20 H -0.186 1.186 21 H 0.071 0.929 22 H 0.111 0.889 23 H 0.069 0.931 24 H 0.137 0.863 25 H 0.139 0.861 26 H 0.135 0.865 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.939 -11.636 4.457 12.496 hybrid contribution -0.718 0.382 0.865 1.187 sum -1.657 -11.254 5.322 12.559 Atomic orbital electron populations 1.22926 0.79273 1.02987 1.01226 1.85971 1.20655 1.27563 1.89793 1.18645 0.92016 0.83618 1.00338 1.21048 0.99184 0.92399 1.10270 1.20491 0.94333 0.96403 0.96644 1.21484 0.93608 0.96889 0.96325 1.20462 0.96491 0.92271 0.98974 1.19606 0.90906 0.97203 1.08593 1.21072 0.91490 0.98217 1.00855 1.22353 0.98470 0.92431 1.01308 1.18860 0.89704 0.91604 0.97343 0.93456 1.20960 1.33431 1.04690 0.94855 0.90649 1.25083 0.94878 0.95753 0.97254 1.69902 1.35603 1.14006 1.34022 0.86990 0.78049 0.78814 0.86629 1.20015 1.21436 1.18582 0.92928 0.88947 0.93070 0.86316 0.86127 0.86533 0.91739 0.91141 0.91973 0.91270 0.92595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.81 101.05 0.99 1.36 16 2 O -0.33 -5.24 10.50 -19.42 -0.20 -5.45 16 3 C 0.10 1.79 6.68 -39.26 -0.26 1.52 16 4 C -0.21 -3.94 9.04 -39.48 -0.36 -4.29 16 5 C -0.06 -1.32 9.78 -39.55 -0.39 -1.70 16 6 C -0.08 -1.84 5.61 -104.01 -0.58 -2.43 16 7 C -0.08 -1.62 6.13 -104.22 -0.64 -2.25 16 8 C -0.14 -2.66 9.98 -39.39 -0.39 -3.05 16 9 C -0.08 -1.37 6.77 -26.85 -0.18 -1.55 16 10 C -0.11 -2.13 6.57 -25.33 -0.17 -2.29 16 11 C 0.04 1.02 2.50 -91.73 -0.23 0.79 16 12 H 0.05 1.12 5.30 -51.93 -0.28 0.85 16 13 C -0.50 -13.80 8.69 -34.44 -0.30 -14.10 16 14 H 0.08 2.27 7.97 -52.49 -0.42 1.85 16 15 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 16 N -0.90 -26.92 13.96 55.43 0.77 -26.15 16 17 Si 0.87 21.07 27.00 -169.99 -4.59 16.48 16 18 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 20 H -0.26 -6.14 6.80 56.52 0.38 -5.76 16 21 H 0.05 0.59 7.66 -51.93 -0.40 0.19 16 22 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.05 0.56 7.66 -51.93 -0.40 0.16 16 24 H 0.12 1.88 6.31 -52.49 -0.33 1.55 16 25 H 0.12 2.71 8.06 -52.48 -0.42 2.29 16 26 H 0.12 1.88 8.06 -52.49 -0.42 1.46 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.07 1.40 7.85 -51.93 -0.41 0.99 16 31 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 LS Contribution 259.25 15.07 3.91 3.91 Total: -1.00 -30.37 259.25 -6.63 -37.00 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -3.92 Total: 0.26 kcal Atomic # 6 Polarization: -23.46 SS G_CDS: -2.60 Total: -26.06 kcal Atomic # 7 Polarization: -26.92 SS G_CDS: 0.77 Total: -26.15 kcal Atomic # 8 Polarization: -5.24 SS G_CDS: -0.20 Total: -5.45 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.59 Total: 16.48 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -30.37 -6.63 -37.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238360124.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.911 kcal (2) G-P(sol) polarization free energy of solvation -30.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds