Wall clock time and date at job start Mon Mar 30 2020 02:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35898 * 117.00186 * 2 1 4 4 C 1.38750 * 120.08708 * 0.02562 * 3 2 1 5 5 C 1.38009 * 119.87388 * 179.97438 * 4 3 2 6 6 C 1.38541 * 120.29154 * 0.02562 * 5 4 3 7 7 C 1.38260 * 119.94073 * 359.97438 * 6 5 4 8 8 C 1.38413 * 119.90003 * 359.97438 * 7 6 5 9 9 C 1.51380 * 109.75697 * 180.02562 * 7 6 5 10 10 C 1.54342 * 105.16837 * 342.80982 * 9 7 6 11 11 C 1.51690 * 130.23938 * 179.81171 * 6 5 4 12 12 H 1.09004 * 110.25788 * 78.28466 * 11 6 5 13 13 C 1.50707 * 110.49440 * 316.03850 * 11 6 5 14 14 H 1.07998 * 119.99796 * 279.13714 * 13 11 6 15 15 C 1.37875 * 119.99712 * 99.13769 * 13 11 6 16 16 N 1.31520 * 119.99782 * 183.58800 * 15 13 11 17 17 Si 1.86795 * 120.00400 * 3.59166 * 15 13 11 18 18 H 1.48505 * 109.47336 * 85.52010 * 17 15 13 19 19 H 1.48501 * 109.47463 * 205.52144 * 17 15 13 20 20 H 1.48502 * 109.47154 * 325.52263 * 17 15 13 21 21 H 1.08994 * 109.47788 * 59.99635 * 1 2 3 22 22 H 1.09004 * 109.46757 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.46899 * 299.98868 * 1 2 3 24 24 H 1.07997 * 120.06722 * 359.97438 * 4 3 2 25 25 H 1.08007 * 119.84961 * 179.97438 * 5 4 3 26 26 H 1.08002 * 119.91228 * 180.02562 * 8 7 6 27 27 H 1.08997 * 110.30229 * 223.88737 * 9 7 6 28 28 H 1.08997 * 110.30278 * 101.73056 * 9 7 6 29 29 H 1.08999 * 110.82240 * 144.59048 * 10 9 7 30 30 H 1.09003 * 110.82279 * 267.93836 * 10 9 7 31 31 H 0.96999 * 120.00241 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2921 2.3757 0.0005 5 6 1.9233 3.6030 0.0011 6 6 3.3067 3.6773 0.0005 7 6 4.0601 2.5180 0.0000 8 6 3.4299 1.2856 0.0005 9 6 5.5335 2.8652 0.0001 10 6 5.6002 4.3432 -0.4395 11 6 4.2230 4.8862 -0.0029 12 1 4.2858 5.3150 0.9973 13 6 3.7318 5.9179 -0.9854 14 1 3.9526 5.8102 -2.0371 15 6 3.0005 6.9992 -0.5416 16 7 2.5117 7.8618 -1.4058 17 14 2.7040 7.2393 1.2870 18 1 3.8532 7.9665 1.8835 19 1 1.4614 8.0273 1.4878 20 1 2.5618 5.9148 1.9434 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8901 24 1 0.2135 2.3221 0.0005 25 1 1.3361 4.5095 0.0011 26 1 4.0182 0.3799 0.0005 27 1 6.0706 2.2352 -0.7088 28 1 5.9493 2.7492 1.0010 29 1 6.4046 4.8656 0.0784 30 1 5.7224 4.4210 -1.5198 31 1 1.9969 8.6223 -1.0937 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238360124.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:35 Heat of formation + Delta-G solvation = -39.336265 kcal Electronic energy + Delta-G solvation = -14413.222441 eV Core-core repulsion = 12044.619311 eV Total energy + Delta-G solvation = -2368.603130 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.27141 -39.44747 -35.90914 -34.52580 -32.35526 -29.78261 -29.26667 -27.72154 -25.25794 -23.57559 -21.54831 -21.11147 -19.14427 -18.47093 -17.15108 -16.61602 -16.54986 -16.15595 -15.48233 -15.04295 -14.67878 -14.37122 -14.00602 -13.81204 -13.40565 -12.93540 -12.73925 -12.56415 -12.31640 -12.09539 -12.01590 -11.77187 -11.50041 -11.21847 -11.12087 -10.71817 -9.63790 -8.80492 -8.29904 -6.32292 0.46449 0.62924 1.31597 1.34116 1.45026 2.32858 2.39581 2.87841 3.07430 3.79429 3.97011 4.09291 4.25585 4.38400 4.40910 4.41312 4.54258 4.62601 4.71201 4.81552 4.89447 4.98264 5.09838 5.23314 5.36626 5.45159 5.48209 5.62459 5.71099 5.90468 6.01961 6.31122 6.53760 6.74072 7.32180 8.87144 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.030678 B = 0.010038 C = 0.008394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.477028 B = 2788.747338 C = 3334.808673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.330 6.330 3 C 0.105 3.895 4 C -0.211 4.211 5 C -0.085 4.085 6 C -0.122 4.122 7 C -0.080 4.080 8 C -0.147 4.147 9 C -0.070 4.070 10 C -0.108 4.108 11 C 0.037 3.963 12 H 0.046 0.954 13 C -0.501 4.501 14 H 0.030 0.970 15 C 0.017 3.983 16 N -0.949 5.949 17 Si 0.933 3.067 18 H -0.262 1.262 19 H -0.288 1.288 20 H -0.250 1.250 21 H 0.056 0.944 22 H 0.126 0.874 23 H 0.060 0.940 24 H 0.144 0.856 25 H 0.098 0.902 26 H 0.145 0.855 27 H 0.091 0.909 28 H 0.098 0.902 29 H 0.082 0.918 30 H 0.053 0.947 31 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.605 -14.209 6.206 15.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.244 6.244 3 C 0.061 3.939 4 C -0.230 4.230 5 C -0.104 4.104 6 C -0.123 4.123 7 C -0.081 4.081 8 C -0.166 4.166 9 C -0.106 4.106 10 C -0.145 4.145 11 C 0.018 3.982 12 H 0.063 0.937 13 C -0.539 4.539 14 H 0.048 0.952 15 C -0.180 4.180 16 N -0.589 5.589 17 Si 0.757 3.243 18 H -0.187 1.187 19 H -0.214 1.214 20 H -0.174 1.174 21 H 0.075 0.925 22 H 0.144 0.856 23 H 0.078 0.922 24 H 0.161 0.839 25 H 0.117 0.883 26 H 0.162 0.838 27 H 0.109 0.891 28 H 0.116 0.884 29 H 0.100 0.900 30 H 0.071 0.929 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.626 -14.238 6.182 15.535 hybrid contribution -0.884 1.054 0.233 1.395 sum -1.510 -13.184 6.415 14.739 Atomic orbital electron populations 1.23301 0.76858 1.05497 1.01840 1.85983 1.23098 1.26128 1.89233 1.18790 0.92339 0.84208 0.98589 1.21223 1.00580 0.91531 1.09624 1.20516 0.94395 0.96925 0.98533 1.21420 0.94059 0.97326 0.99459 1.20739 0.97548 0.91834 0.97937 1.19920 0.91384 0.97661 1.07601 1.21080 0.90312 0.96214 1.03039 1.22303 0.96821 0.94804 1.00610 1.18881 0.92149 0.91269 0.95898 0.93659 1.21161 1.32914 1.06002 0.93783 0.95150 1.25880 0.94737 0.95472 1.01923 1.70053 1.37391 1.15089 1.36374 0.85943 0.78172 0.79169 0.80995 1.18679 1.21383 1.17390 0.92549 0.85634 0.92184 0.83872 0.88345 0.83757 0.89081 0.88395 0.89976 0.92855 0.92571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.81 113.37 1.11 1.50 16 2 O -0.33 -9.47 10.50 -92.40 -0.97 -10.44 16 3 C 0.11 3.57 6.68 22.48 0.15 3.72 16 4 C -0.21 -7.59 9.04 22.34 0.20 -7.39 16 5 C -0.09 -3.72 9.78 22.29 0.22 -3.51 16 6 C -0.12 -5.42 5.61 -19.47 -0.11 -5.53 16 7 C -0.08 -3.00 6.13 -19.60 -0.12 -3.12 16 8 C -0.15 -4.96 9.98 22.40 0.22 -4.74 16 9 C -0.07 -2.18 6.77 30.52 0.21 -1.98 16 10 C -0.11 -4.13 6.57 31.50 0.21 -3.92 16 11 C 0.04 1.72 2.50 -11.52 -0.03 1.69 16 12 H 0.05 2.12 5.30 -2.39 -0.01 2.10 16 13 C -0.50 -28.70 8.69 25.60 0.22 -28.48 16 14 H 0.03 1.95 7.97 -2.91 -0.02 1.93 16 15 C 0.02 0.98 5.47 84.65 0.46 1.45 16 16 N -0.95 -59.41 13.96 21.45 0.30 -59.12 16 17 Si 0.93 44.39 27.00 68.60 1.85 46.24 16 18 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 19 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 20 H -0.25 -11.34 6.80 99.48 0.68 -10.66 16 21 H 0.06 1.09 7.66 -2.39 -0.02 1.07 16 22 H 0.13 1.66 8.14 -2.38 -0.02 1.64 16 23 H 0.06 1.10 7.66 -2.39 -0.02 1.08 16 24 H 0.14 4.26 6.31 -2.91 -0.02 4.24 16 25 H 0.10 4.60 8.06 -2.91 -0.02 4.58 16 26 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 27 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 29 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 30 H 0.05 2.17 7.85 -2.39 -0.02 2.15 16 31 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -67.98 259.25 5.01 -62.97 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: 1.09 Total: 10.65 kcal Atomic # 6 Polarization: -53.05 SS G_CDS: 2.75 Total: -50.30 kcal Atomic # 7 Polarization: -59.41 SS G_CDS: 0.30 Total: -59.12 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: -0.97 Total: -10.44 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.85 Total: 46.24 kcal Total: -67.98 5.01 -62.97 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238360124.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.630 kcal (2) G-P(sol) polarization free energy of solvation -67.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds