Wall clock time and date at job start Mon Mar 30 2020 02:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50697 * 120.00147 * 2 1 4 4 C 1.50696 * 109.47408 * 124.72203 * 3 2 1 5 5 C 1.36527 * 120.03703 * 264.72334 * 4 3 2 6 6 C 1.38772 * 120.53606 * 179.69898 * 5 4 3 7 7 C 1.38354 * 120.59401 * 0.60298 * 6 5 4 8 8 C 1.38403 * 120.04557 * 359.68159 * 7 6 5 9 9 O 1.35648 * 120.26126 * 180.02562 * 8 7 6 10 10 C 1.42900 * 117.00081 * 359.97438 * 9 8 7 11 11 C 1.40691 * 120.03397 * 84.99910 * 4 3 2 12 12 C 1.41153 * 120.28946 * 0.02611 * 11 4 3 13 13 H 1.08001 * 119.99868 * 321.32992 * 12 11 4 14 14 C 1.39940 * 120.00202 * 141.33660 * 12 11 4 15 15 N 1.30865 * 119.99599 * 339.61519 * 14 12 11 16 16 Si 1.86796 * 120.00023 * 159.61048 * 14 12 11 17 17 H 1.48500 * 109.47184 * 0.02562 * 16 14 12 18 18 H 1.48495 * 109.46976 * 119.99998 * 16 14 12 19 19 H 1.48500 * 109.47254 * 240.00415 * 16 14 12 20 20 H 1.07996 * 120.00012 * 180.28317 * 1 2 3 21 21 H 1.08004 * 119.99732 * 0.27533 * 1 2 3 22 22 H 1.08000 * 119.99674 * 179.71903 * 2 1 3 23 23 H 1.09002 * 109.46963 * 244.72550 * 3 2 1 24 24 H 1.09006 * 109.47039 * 4.71931 * 3 2 1 25 25 H 1.08003 * 119.72629 * 359.97438 * 5 4 3 26 26 H 1.08004 * 119.70378 * 180.32513 * 6 5 4 27 27 H 1.07995 * 119.97287 * 179.70309 * 7 6 5 28 28 H 1.09001 * 109.47444 * 59.99623 * 10 9 8 29 29 H 1.08997 * 109.47010 * 179.97438 * 10 9 8 30 30 H 1.09002 * 109.46925 * 300.00007 * 10 9 8 31 31 H 0.97003 * 119.99700 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0156 1.3355 1.1677 5 6 2.6430 1.9320 2.3379 6 6 3.5091 1.9606 3.4218 7 6 4.7690 1.3962 3.3314 8 6 5.1741 0.7902 2.1549 9 8 6.4083 0.2351 2.0616 10 6 7.2432 0.3115 3.2188 11 6 4.2915 0.7543 1.0514 12 6 4.6870 0.1411 -0.1569 13 1 3.9758 -0.4391 -0.7261 14 6 6.0007 0.2849 -0.6174 15 7 6.7417 1.2724 -0.1833 16 14 6.6964 -0.9327 -1.8513 17 1 5.6641 -1.9480 -2.1809 18 1 7.0937 -0.2122 -3.0875 19 1 7.8843 -1.6056 -1.2670 20 1 -0.5400 -0.9353 0.0046 21 1 -0.5400 0.9354 -0.0045 22 1 1.8500 -0.9353 0.0046 23 1 2.6252 1.4003 -0.9293 24 1 1.3582 2.1319 0.0846 25 1 1.6645 2.3815 2.4220 26 1 3.1984 2.4315 4.3428 27 1 5.4367 1.4283 4.1796 28 1 6.7564 -0.1951 4.0522 29 1 8.1987 -0.1695 3.0098 30 1 7.4111 1.3570 3.4772 31 1 7.6524 1.3719 -0.5022 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238367863.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:47 Heat of formation + Delta-G solvation = -2.676989 kcal Electronic energy + Delta-G solvation = -14621.014652 eV Core-core repulsion = 12254.001187 eV Total energy + Delta-G solvation = -2367.013465 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.63540 -36.41001 -33.84069 -33.42114 -30.12129 -29.07585 -26.36011 -25.71269 -24.42365 -20.91528 -19.90365 -18.90235 -17.31603 -16.11308 -15.23074 -14.70672 -14.35097 -14.23444 -14.06370 -13.05663 -12.97096 -12.52032 -12.24860 -11.66786 -11.23362 -11.16806 -11.01942 -10.83983 -10.64885 -10.41642 -10.37792 -9.92364 -9.67657 -9.38618 -8.85495 -8.57187 -7.30757 -6.74543 -6.55731 -4.18232 2.75265 2.93170 3.09450 3.19131 3.23768 3.25186 4.10446 4.71980 4.80550 5.48261 5.73958 5.91799 5.91957 6.01243 6.10876 6.14538 6.24568 6.35222 6.46006 6.60886 6.74618 6.86495 7.07987 7.22725 7.29628 7.38831 7.49243 7.79961 7.84630 8.04314 8.20601 8.57002 8.63227 9.02507 9.23347 10.40568 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.020928 B = 0.014492 C = 0.009312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.629759 B = 1931.599669 C = 3006.141197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.109 4.109 3 C -0.032 4.032 4 C -0.158 4.158 5 C -0.117 4.117 6 C -0.203 4.203 7 C -0.195 4.195 8 C 0.074 3.926 9 O -0.279 6.279 10 C 0.034 3.966 11 C 0.107 3.893 12 C -0.469 4.469 13 H 0.080 0.920 14 C 0.091 3.909 15 N -0.773 5.773 16 Si 0.896 3.104 17 H -0.263 1.263 18 H -0.279 1.279 19 H -0.275 1.275 20 H 0.086 0.914 21 H 0.088 0.912 22 H 0.106 0.894 23 H 0.082 0.918 24 H 0.051 0.949 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.094 0.906 28 H 0.033 0.967 29 H 0.076 0.924 30 H 0.038 0.962 31 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.994 -1.333 1.621 2.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.272 4.272 2 C -0.127 4.127 3 C -0.068 4.068 4 C -0.160 4.160 5 C -0.135 4.135 6 C -0.223 4.223 7 C -0.215 4.215 8 C 0.028 3.972 9 O -0.191 6.191 10 C -0.063 4.063 11 C 0.104 3.896 12 C -0.499 4.499 13 H 0.098 0.902 14 C -0.128 4.128 15 N -0.397 5.397 16 Si 0.722 3.278 17 H -0.187 1.187 18 H -0.205 1.205 19 H -0.200 1.200 20 H 0.104 0.896 21 H 0.106 0.894 22 H 0.124 0.876 23 H 0.100 0.900 24 H 0.070 0.930 25 H 0.106 0.894 26 H 0.107 0.893 27 H 0.112 0.888 28 H 0.051 0.949 29 H 0.094 0.906 30 H 0.056 0.944 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.674 -1.312 1.422 2.559 hybrid contribution 0.594 -0.377 -0.047 0.705 sum -1.080 -1.689 1.375 2.431 Atomic orbital electron populations 1.23587 0.95930 1.00617 1.07079 1.23152 0.95354 0.99625 0.94609 1.19399 0.95837 0.93288 0.98318 1.19087 0.96471 1.05466 0.94926 1.20099 0.97808 1.01905 0.93720 1.20087 0.95277 1.08780 0.98124 1.20712 0.97957 1.05845 0.96944 1.19283 0.85533 0.99166 0.93204 1.86202 1.24060 1.74167 1.34676 1.22693 0.94306 1.00099 0.89215 1.16776 0.89162 0.92231 0.91419 1.19190 0.95713 1.29389 1.05570 0.90237 1.25618 0.96463 0.94281 0.96431 1.69754 1.08618 1.24889 1.36448 0.86465 0.79596 0.81729 0.80052 1.18668 1.20515 1.20009 0.89569 0.89375 0.87590 0.89981 0.92997 0.89387 0.89324 0.88772 0.94852 0.90571 0.94368 0.91386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -3.82 14.32 29.01 0.42 -3.40 16 2 C -0.11 -2.07 9.19 -36.03 -0.33 -2.40 16 3 C -0.03 -0.65 5.18 -29.04 -0.15 -0.80 16 4 C -0.16 -3.78 5.14 -104.32 -0.54 -4.32 16 5 C -0.12 -2.66 9.59 -40.00 -0.38 -3.04 16 6 C -0.20 -4.60 10.04 -39.34 -0.39 -5.00 16 7 C -0.20 -4.60 9.04 -39.48 -0.36 -4.96 16 8 C 0.07 1.90 6.18 -38.34 -0.24 1.67 16 9 O -0.28 -6.95 7.39 -18.64 -0.14 -7.09 16 10 C 0.03 0.65 9.81 101.05 0.99 1.64 16 11 C 0.11 2.82 5.37 -106.68 -0.57 2.24 16 12 C -0.47 -12.34 7.65 -37.84 -0.29 -12.63 16 13 H 0.08 2.02 6.96 -52.49 -0.37 1.65 16 14 C 0.09 2.34 4.40 -17.33 -0.08 2.26 16 15 N -0.77 -20.45 11.25 55.55 0.62 -19.83 16 16 Si 0.90 19.38 29.61 -169.99 -5.03 14.35 16 17 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 18 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 19 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 20 H 0.09 1.24 8.06 -52.49 -0.42 0.82 16 21 H 0.09 1.33 7.84 -52.48 -0.41 0.92 16 22 H 0.11 2.08 7.75 -52.49 -0.41 1.67 16 23 H 0.08 1.78 7.25 -51.93 -0.38 1.40 16 24 H 0.05 0.97 7.69 -51.93 -0.40 0.58 16 25 H 0.09 1.78 8.05 -52.48 -0.42 1.36 16 26 H 0.09 1.77 8.06 -52.48 -0.42 1.34 16 27 H 0.09 1.99 6.31 -52.49 -0.33 1.65 16 28 H 0.03 0.59 7.67 -51.93 -0.40 0.19 16 29 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.04 0.72 7.67 -51.93 -0.40 0.32 16 31 H 0.28 6.73 8.30 -40.82 -0.34 6.40 16 LS Contribution 265.20 15.07 4.00 4.00 Total: -1.00 -28.03 265.20 -6.38 -34.41 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -3.91 Total: 2.88 kcal Atomic # 6 Polarization: -26.81 SS G_CDS: -1.92 Total: -28.73 kcal Atomic # 7 Polarization: -20.45 SS G_CDS: 0.62 Total: -19.83 kcal Atomic # 8 Polarization: -6.95 SS G_CDS: -0.14 Total: -7.09 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.03 Total: 14.35 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -28.03 -6.38 -34.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238367863.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.737 kcal (2) G-P(sol) polarization free energy of solvation -28.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds