Wall clock time and date at job start Mon Mar 30 2020 02:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50701 * 119.99940 * 2 1 4 4 C 1.50693 * 109.47159 * 239.99961 * 3 2 1 5 5 C 1.36448 * 120.09433 * 264.72967 * 4 3 2 6 6 C 1.39298 * 120.18759 * 179.75174 * 5 4 3 7 7 O 1.35676 * 119.81854 * 180.25607 * 6 5 4 8 8 C 1.42905 * 116.99891 * 180.24432 * 7 6 5 9 9 C 1.39338 * 120.36163 * 0.49572 * 6 5 4 10 10 C 1.36424 * 120.18402 * 359.77920 * 9 6 5 11 11 C 1.40819 * 120.09630 * 85.00087 * 4 3 2 12 12 C 1.41216 * 120.17879 * 0.02562 * 11 4 3 13 13 H 1.08004 * 119.99531 * 25.82634 * 12 11 4 14 14 C 1.39890 * 120.00293 * 205.81823 * 12 11 4 15 15 N 1.30878 * 119.99819 * 15.18393 * 14 12 11 16 16 Si 1.86803 * 120.00123 * 195.17902 * 14 12 11 17 17 H 1.48497 * 109.46904 * 60.00211 * 16 14 12 18 18 H 1.48489 * 109.47120 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47029 * 300.00273 * 16 14 12 20 20 H 1.07996 * 119.99911 * 180.02562 * 1 2 3 21 21 H 1.08000 * 120.00176 * 359.97438 * 1 2 3 22 22 H 1.08000 * 119.99734 * 179.97438 * 2 1 3 23 23 H 1.09004 * 109.46796 * 0.02562 * 3 2 1 24 24 H 1.08999 * 109.47073 * 119.99646 * 3 2 1 25 25 H 1.08006 * 119.90833 * 359.97233 * 5 4 3 26 26 H 1.08999 * 109.46857 * 59.99565 * 8 7 6 27 27 H 1.08991 * 109.47472 * 179.97438 * 8 7 6 28 28 H 1.09001 * 109.46727 * 299.99808 * 8 7 6 29 29 H 1.07998 * 119.90657 * 179.75589 * 9 6 5 30 30 H 1.07996 * 120.09009 * 179.97438 * 10 9 6 31 31 H 0.96996 * 119.99688 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9299 1.3850 -1.2304 5 6 4.2404 1.0098 -1.1699 6 6 5.0417 1.0779 -2.3073 7 8 6.3424 0.6980 -2.2400 8 6 7.1104 0.7975 -3.4411 9 6 4.5159 1.5387 -3.5126 10 6 3.2091 1.9230 -3.5887 11 6 2.3909 1.8524 -2.4445 12 6 1.0372 2.2486 -2.5143 13 1 0.5295 2.5949 -1.6262 14 6 0.3541 2.1929 -3.7338 15 7 0.8524 1.5090 -4.7323 16 14 -1.2693 3.0943 -3.9370 17 1 -1.0609 4.5468 -3.7087 18 1 -1.7868 2.8782 -5.3120 19 1 -2.2511 2.5742 -2.9517 20 1 -0.5400 -0.9353 0.0004 21 1 -0.5400 0.9353 0.0004 22 1 1.8500 -0.9353 0.0004 23 1 1.3551 2.1336 0.0005 24 1 2.6901 1.3629 0.8900 25 1 4.6567 0.6556 -0.2384 26 1 7.1249 1.8340 -3.7781 27 1 8.1300 0.4639 -3.2491 28 1 6.6618 0.1710 -4.2120 29 1 5.1448 1.5922 -4.3890 30 1 2.8033 2.2803 -4.5235 31 1 0.3785 1.4700 -5.5777 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238379627.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:54 Heat of formation + Delta-G solvation = -8.277232 kcal Electronic energy + Delta-G solvation = -14335.638189 eV Core-core repulsion = 11968.381879 eV Total energy + Delta-G solvation = -2367.256309 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.77820 -36.81237 -33.96961 -33.24079 -30.01615 -29.34343 -27.06687 -25.32517 -24.34660 -21.09020 -19.97930 -18.84887 -17.14623 -16.59622 -15.49856 -14.78146 -14.68430 -14.24793 -13.86556 -13.01143 -12.98892 -12.55933 -12.16168 -11.80190 -11.52409 -11.18160 -11.13076 -11.03290 -10.78699 -10.55933 -10.32476 -9.78023 -9.58760 -9.44623 -9.00584 -8.45484 -7.48714 -6.94904 -6.67738 -4.20902 2.76138 2.89617 3.08316 3.11185 3.22719 3.24032 3.96883 4.38631 4.65694 5.55608 5.69739 5.74934 5.83906 5.92282 6.02291 6.15474 6.25561 6.31184 6.55788 6.68426 6.79711 6.85936 7.12447 7.31715 7.37172 7.44346 7.62223 7.67175 7.93675 8.00271 8.20659 8.47138 8.68044 8.93653 9.02254 10.26447 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.025851 B = 0.010760 C = 0.008061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.865134 B = 2601.720367 C = 3472.555998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.122 4.122 3 C -0.028 4.028 4 C -0.161 4.161 5 C -0.110 4.110 6 C -0.009 4.009 7 O -0.335 6.335 8 C 0.040 3.960 9 C -0.176 4.176 10 C -0.132 4.132 11 C 0.096 3.904 12 C -0.451 4.451 13 H 0.078 0.922 14 C 0.075 3.925 15 N -0.803 5.803 16 Si 0.903 3.097 17 H -0.265 1.265 18 H -0.280 1.280 19 H -0.265 1.265 20 H 0.083 0.917 21 H 0.092 0.908 22 H 0.096 0.904 23 H 0.069 0.931 24 H 0.054 0.946 25 H 0.096 0.904 26 H 0.041 0.959 27 H 0.080 0.920 28 H 0.042 0.958 29 H 0.094 0.906 30 H 0.123 0.877 31 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.155 -0.127 2.321 3.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.140 4.140 3 C -0.065 4.065 4 C -0.162 4.162 5 C -0.129 4.129 6 C -0.052 4.052 7 O -0.251 6.251 8 C -0.056 4.056 9 C -0.195 4.195 10 C -0.151 4.151 11 C 0.094 3.906 12 C -0.481 4.481 13 H 0.096 0.904 14 C -0.141 4.141 15 N -0.429 5.429 16 Si 0.728 3.272 17 H -0.190 1.190 18 H -0.205 1.205 19 H -0.190 1.190 20 H 0.102 0.898 21 H 0.111 0.889 22 H 0.114 0.886 23 H 0.088 0.912 24 H 0.073 0.927 25 H 0.115 0.885 26 H 0.060 0.940 27 H 0.099 0.901 28 H 0.061 0.939 29 H 0.112 0.888 30 H 0.141 0.859 31 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.183 -0.268 2.238 3.138 hybrid contribution -0.739 0.284 -0.751 1.091 sum 1.444 0.016 1.487 2.073 Atomic orbital electron populations 1.23574 0.95965 1.00698 1.03914 1.22816 0.95669 0.98217 0.97325 1.19361 0.97182 0.95037 0.94895 1.19083 0.92972 1.08138 0.96039 1.19456 0.93162 1.04993 0.95253 1.18601 0.82878 1.08712 0.95046 1.85805 1.21313 1.83860 1.34115 1.22684 0.94746 1.00443 0.87775 1.20638 0.97346 1.06293 0.95236 1.20973 0.91287 1.02776 1.00093 1.17405 0.93226 0.89869 0.90140 1.19393 0.95643 1.38257 0.94837 0.90402 1.25835 0.99425 0.93426 0.95417 1.69817 1.38560 1.30929 1.03617 0.86445 0.81840 0.80880 0.78047 1.18979 1.20493 1.19008 0.89843 0.88935 0.88618 0.91241 0.92708 0.88542 0.93993 0.90138 0.93922 0.88774 0.85946 0.91080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.76 14.32 29.01 0.42 -3.34 16 2 C -0.12 -2.39 9.50 -36.03 -0.34 -2.73 16 3 C -0.03 -0.57 5.31 -29.04 -0.15 -0.72 16 4 C -0.16 -3.84 5.14 -104.30 -0.54 -4.38 16 5 C -0.11 -2.57 9.54 -39.83 -0.38 -2.95 16 6 C -0.01 -0.22 6.71 -38.78 -0.26 -0.48 16 7 O -0.34 -7.12 10.48 -18.73 -0.20 -7.32 16 8 C 0.04 0.64 9.80 101.05 0.99 1.64 16 9 C -0.18 -4.21 8.96 -39.83 -0.36 -4.57 16 10 C -0.13 -3.43 8.63 -39.25 -0.34 -3.77 16 11 C 0.10 2.51 5.57 -106.80 -0.59 1.91 16 12 C -0.45 -11.61 8.46 -37.83 -0.32 -11.93 16 13 H 0.08 1.92 6.34 -52.48 -0.33 1.59 16 14 C 0.08 1.87 5.18 -17.34 -0.09 1.78 16 15 N -0.80 -20.74 10.88 55.54 0.60 -20.13 16 16 Si 0.90 18.72 29.59 -169.99 -5.03 13.69 16 17 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 18 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 19 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 20 H 0.08 1.37 8.06 -52.49 -0.42 0.95 16 21 H 0.09 1.69 7.83 -52.49 -0.41 1.28 16 22 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 23 H 0.07 1.43 6.12 -51.93 -0.32 1.11 16 24 H 0.05 1.00 8.04 -51.93 -0.42 0.58 16 25 H 0.10 2.06 8.05 -52.48 -0.42 1.63 16 26 H 0.04 0.65 7.65 -51.93 -0.40 0.26 16 27 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.04 0.68 7.65 -51.93 -0.40 0.28 16 29 H 0.09 2.01 6.27 -52.49 -0.33 1.68 16 30 H 0.12 3.27 6.15 -52.49 -0.32 2.95 16 31 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 LS Contribution 266.05 15.07 4.01 4.01 Total: -1.00 -27.72 266.05 -6.33 -34.05 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -3.75 Total: 5.22 kcal Atomic # 6 Polarization: -27.56 SS G_CDS: -1.97 Total: -29.53 kcal Atomic # 7 Polarization: -20.74 SS G_CDS: 0.60 Total: -20.13 kcal Atomic # 8 Polarization: -7.12 SS G_CDS: -0.20 Total: -7.32 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.69 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -27.72 -6.33 -34.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238379627.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.774 kcal (2) G-P(sol) polarization free energy of solvation -27.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds