Wall clock time and date at job start Mon Mar 30 2020 02:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50701 * 119.99940 * 2 1 4 4 C 1.50693 * 109.47159 * 239.99961 * 3 2 1 5 5 C 1.36448 * 120.09433 * 264.72967 * 4 3 2 6 6 C 1.39298 * 120.18759 * 179.75174 * 5 4 3 7 7 O 1.35676 * 119.81854 * 180.25607 * 6 5 4 8 8 C 1.42905 * 116.99891 * 180.24432 * 7 6 5 9 9 C 1.39338 * 120.36163 * 0.49572 * 6 5 4 10 10 C 1.36424 * 120.18402 * 359.77920 * 9 6 5 11 11 C 1.40819 * 120.09630 * 85.00087 * 4 3 2 12 12 C 1.41216 * 120.17879 * 0.02562 * 11 4 3 13 13 H 1.08004 * 119.99531 * 25.82634 * 12 11 4 14 14 C 1.39890 * 120.00293 * 205.81823 * 12 11 4 15 15 N 1.30878 * 119.99819 * 15.18393 * 14 12 11 16 16 Si 1.86803 * 120.00123 * 195.17902 * 14 12 11 17 17 H 1.48497 * 109.46904 * 60.00211 * 16 14 12 18 18 H 1.48489 * 109.47120 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47029 * 300.00273 * 16 14 12 20 20 H 1.07996 * 119.99911 * 180.02562 * 1 2 3 21 21 H 1.08000 * 120.00176 * 359.97438 * 1 2 3 22 22 H 1.08000 * 119.99734 * 179.97438 * 2 1 3 23 23 H 1.09004 * 109.46796 * 0.02562 * 3 2 1 24 24 H 1.08999 * 109.47073 * 119.99646 * 3 2 1 25 25 H 1.08006 * 119.90833 * 359.97233 * 5 4 3 26 26 H 1.08999 * 109.46857 * 59.99565 * 8 7 6 27 27 H 1.08991 * 109.47472 * 179.97438 * 8 7 6 28 28 H 1.09001 * 109.46727 * 299.99808 * 8 7 6 29 29 H 1.07998 * 119.90657 * 179.75589 * 9 6 5 30 30 H 1.07996 * 120.09009 * 179.97438 * 10 9 6 31 31 H 0.96996 * 119.99688 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9299 1.3850 -1.2304 5 6 4.2404 1.0098 -1.1699 6 6 5.0417 1.0779 -2.3073 7 8 6.3424 0.6980 -2.2400 8 6 7.1104 0.7975 -3.4411 9 6 4.5159 1.5387 -3.5126 10 6 3.2091 1.9230 -3.5887 11 6 2.3909 1.8524 -2.4445 12 6 1.0372 2.2486 -2.5143 13 1 0.5295 2.5949 -1.6262 14 6 0.3541 2.1929 -3.7338 15 7 0.8524 1.5090 -4.7323 16 14 -1.2693 3.0943 -3.9370 17 1 -1.0609 4.5468 -3.7087 18 1 -1.7868 2.8782 -5.3120 19 1 -2.2511 2.5742 -2.9517 20 1 -0.5400 -0.9353 0.0004 21 1 -0.5400 0.9353 0.0004 22 1 1.8500 -0.9353 0.0004 23 1 1.3551 2.1336 0.0005 24 1 2.6901 1.3629 0.8900 25 1 4.6567 0.6556 -0.2384 26 1 7.1249 1.8340 -3.7781 27 1 8.1300 0.4639 -3.2491 28 1 6.6618 0.1710 -4.2120 29 1 5.1448 1.5922 -4.3890 30 1 2.8033 2.2803 -4.5235 31 1 0.3785 1.4700 -5.5777 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238379627.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:54 Heat of formation + Delta-G solvation = -22.539950 kcal Electronic energy + Delta-G solvation = -14336.256666 eV Core-core repulsion = 11968.381879 eV Total energy + Delta-G solvation = -2367.874787 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.52771 -38.51852 -35.63880 -35.02743 -31.76512 -31.15730 -28.63401 -26.90268 -26.16979 -22.95091 -21.68934 -20.43538 -19.01270 -18.29107 -17.24338 -16.42623 -16.29387 -15.79209 -15.59248 -14.76872 -14.60156 -14.21140 -13.79626 -13.61178 -13.24140 -12.79770 -12.77604 -12.60681 -12.47606 -12.12798 -11.90504 -11.49451 -11.37279 -11.23077 -10.82965 -9.99318 -9.33892 -8.81754 -8.52012 -6.12949 0.95198 1.06723 1.40550 1.49880 1.54937 1.68375 2.24644 2.79469 2.84318 3.71111 4.25159 4.35085 4.37833 4.46813 4.50598 4.55173 4.70594 4.74236 4.87811 5.06737 5.10818 5.18755 5.31218 5.46245 5.60278 5.74546 5.91818 6.04027 6.11191 6.14016 6.34658 6.62965 6.85570 7.03781 7.16525 8.43901 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.025851 B = 0.010760 C = 0.008061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.865134 B = 2601.720367 C = 3472.555998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.141 4.141 3 C -0.025 4.025 4 C -0.161 4.161 5 C -0.124 4.124 6 C -0.007 4.007 7 O -0.345 6.345 8 C 0.030 3.970 9 C -0.184 4.184 10 C -0.158 4.158 11 C 0.064 3.936 12 C -0.474 4.474 13 H 0.080 0.920 14 C 0.034 3.966 15 N -0.836 5.836 16 Si 0.970 3.030 17 H -0.262 1.262 18 H -0.274 1.274 19 H -0.258 1.258 20 H 0.104 0.896 21 H 0.091 0.909 22 H 0.101 0.899 23 H 0.064 0.936 24 H 0.076 0.924 25 H 0.117 0.883 26 H 0.048 0.952 27 H 0.119 0.881 28 H 0.044 0.956 29 H 0.113 0.887 30 H 0.106 0.894 31 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.158 -0.315 2.933 3.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.159 4.159 3 C -0.062 4.062 4 C -0.163 4.163 5 C -0.142 4.142 6 C -0.051 4.051 7 O -0.261 6.261 8 C -0.065 4.065 9 C -0.202 4.202 10 C -0.177 4.177 11 C 0.062 3.938 12 C -0.504 4.504 13 H 0.098 0.902 14 C -0.179 4.179 15 N -0.464 5.464 16 Si 0.792 3.208 17 H -0.187 1.187 18 H -0.199 1.199 19 H -0.182 1.182 20 H 0.122 0.878 21 H 0.109 0.891 22 H 0.119 0.881 23 H 0.082 0.918 24 H 0.095 0.905 25 H 0.135 0.865 26 H 0.066 0.934 27 H 0.138 0.862 28 H 0.062 0.938 29 H 0.131 0.869 30 H 0.124 0.876 31 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.206 -0.460 2.856 3.638 hybrid contribution -0.588 0.292 -0.923 1.132 sum 1.618 -0.169 1.933 2.526 Atomic orbital electron populations 1.23772 0.95734 1.01673 1.02055 1.22829 0.96176 0.97892 0.98980 1.19370 0.97068 0.95522 0.94255 1.19488 0.93685 1.06551 0.96526 1.19785 0.93187 1.05029 0.96242 1.18792 0.84033 1.07439 0.94800 1.85792 1.20206 1.83495 1.36623 1.23039 0.95923 1.01181 0.86371 1.20814 0.96924 1.06115 0.96394 1.20961 0.92416 1.04559 0.99804 1.17767 0.93905 0.91049 0.91123 1.19578 0.95886 1.39341 0.95560 0.90171 1.26617 1.02746 0.93673 0.94822 1.69893 1.40194 1.32101 1.04188 0.85425 0.77676 0.79507 0.78235 1.18673 1.19881 1.18235 0.87768 0.89062 0.88074 0.91754 0.90547 0.86514 0.93357 0.86242 0.93760 0.86863 0.87623 0.90690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -6.86 14.32 67.78 0.97 -5.89 16 2 C -0.14 -5.31 9.50 25.64 0.24 -5.07 16 3 C -0.03 -1.01 5.31 29.10 0.15 -0.86 16 4 C -0.16 -7.66 5.14 -19.65 -0.10 -7.76 16 5 C -0.12 -5.68 9.54 22.11 0.21 -5.47 16 6 C -0.01 -0.32 6.71 22.79 0.15 -0.16 16 7 O -0.35 -14.02 10.48 -89.94 -0.94 -14.96 16 8 C 0.03 0.90 9.80 113.37 1.11 2.01 16 9 C -0.18 -8.79 8.96 22.11 0.20 -8.59 16 10 C -0.16 -8.39 8.63 22.48 0.19 -8.20 16 11 C 0.06 3.38 5.57 -21.28 -0.12 3.26 16 12 C -0.47 -24.63 8.46 23.40 0.20 -24.43 16 13 H 0.08 3.98 6.34 -2.91 -0.02 3.97 16 14 C 0.03 1.72 5.18 85.23 0.44 2.16 16 15 N -0.84 -43.99 10.88 21.82 0.24 -43.76 16 16 Si 0.97 38.28 29.59 68.60 2.03 40.31 16 17 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 18 H -0.27 -10.44 7.11 99.48 0.71 -9.74 16 19 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 20 H 0.10 3.18 8.06 -2.91 -0.02 3.16 16 21 H 0.09 3.21 7.83 -2.91 -0.02 3.18 16 22 H 0.10 3.67 8.06 -2.91 -0.02 3.65 16 23 H 0.06 2.61 6.12 -2.38 -0.01 2.59 16 24 H 0.08 2.66 8.04 -2.39 -0.02 2.64 16 25 H 0.12 4.77 8.05 -2.91 -0.02 4.75 16 26 H 0.05 1.40 7.65 -2.39 -0.02 1.38 16 27 H 0.12 2.66 8.14 -2.39 -0.02 2.64 16 28 H 0.04 1.32 7.65 -2.39 -0.02 1.31 16 29 H 0.11 4.80 6.27 -2.91 -0.02 4.78 16 30 H 0.11 5.87 6.15 -2.91 -0.02 5.85 16 31 H 0.28 13.66 8.30 -92.71 -0.77 12.89 16 Total: -1.00 -58.95 266.05 6.09 -52.85 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: 1.11 Total: 24.54 kcal Atomic # 6 Polarization: -62.65 SS G_CDS: 3.66 Total: -58.99 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: 0.24 Total: -43.76 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -0.94 Total: -14.96 kcal Atomic # 14 Polarization: 38.28 SS G_CDS: 2.03 Total: 40.31 kcal Total: -58.95 6.09 -52.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238379627.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.312 kcal (2) G-P(sol) polarization free energy of solvation -58.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds