Wall clock time and date at job start Mon Mar 30 2020 02:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50709 * 119.99414 * 2 1 4 4 C 1.50700 * 109.46681 * 125.00190 * 3 2 1 5 5 C 1.38558 * 119.78409 * 264.73234 * 4 3 2 6 6 C 1.37628 * 120.30850 * 179.72470 * 5 4 3 7 7 C 1.40765 * 119.85304 * 0.54585 * 6 5 4 8 8 C 1.41402 * 120.21413 * 179.75123 * 7 6 5 9 9 H 1.08003 * 119.99938 * 155.02648 * 8 7 6 10 10 C 1.39930 * 120.00119 * 335.02048 * 8 7 6 11 11 N 1.30827 * 120.00031 * 342.49250 * 10 8 7 12 12 Si 1.86811 * 120.00046 * 162.48880 * 10 8 7 13 13 H 1.48493 * 109.46924 * 60.00174 * 12 10 8 14 14 H 1.48497 * 109.46970 * 180.02562 * 12 10 8 15 15 H 1.48496 * 109.46860 * 300.00089 * 12 10 8 16 16 C 1.40597 * 119.56907 * 359.72473 * 7 6 5 17 17 C 1.38142 * 119.69053 * 0.02562 * 16 7 6 18 18 O 1.35906 * 119.92892 * 179.97438 * 17 16 7 19 19 C 1.42900 * 117.00145 * 0.02562 * 18 17 16 20 20 H 1.08004 * 119.99605 * 179.97438 * 1 2 3 21 21 H 1.07997 * 120.00556 * 359.71997 * 1 2 3 22 22 H 1.07998 * 120.00391 * 180.02562 * 2 1 3 23 23 H 1.08998 * 109.47410 * 245.00108 * 3 2 1 24 24 H 1.08997 * 109.47128 * 5.00916 * 3 2 1 25 25 H 1.08002 * 119.84617 * 359.97438 * 5 4 3 26 26 H 1.07998 * 120.07024 * 180.27234 * 6 5 4 27 27 H 0.96998 * 119.99915 * 180.02562 * 11 10 8 28 28 H 1.07995 * 120.15869 * 180.02562 * 16 7 6 29 29 H 1.08999 * 109.47071 * 179.97438 * 19 18 17 30 30 H 1.08995 * 109.46947 * 299.99558 * 19 18 17 31 31 H 1.08996 * 109.46993 * 60.00194 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3053 0.0000 4 6 3.0204 1.3328 1.1639 5 6 2.6416 1.9364 2.3522 6 6 3.5049 1.9628 3.4237 7 6 4.7828 1.3839 3.3085 8 6 5.6777 1.4114 4.4029 9 1 6.4531 0.6640 4.4853 10 6 5.5590 2.4068 5.3791 11 7 4.8722 3.4915 5.1272 12 14 6.3809 2.1870 7.0422 13 1 7.8468 2.0418 6.8545 14 1 6.1053 3.3737 7.8913 15 1 5.8435 0.9706 7.7030 16 6 5.1634 0.7779 2.0983 17 6 4.2804 0.7573 1.0360 18 8 4.6435 0.1732 -0.1362 19 6 5.9513 -0.3992 -0.1982 20 1 -0.5400 -0.9354 -0.0004 21 1 -0.5401 0.9352 0.0046 22 1 1.8501 -0.9353 -0.0004 23 1 2.6212 1.4029 -0.9314 24 1 1.3585 2.1317 0.0897 25 1 1.6630 2.3848 2.4392 26 1 3.2040 2.4305 4.3496 27 1 4.7902 4.1817 5.8037 28 1 6.1413 0.3306 1.9995 29 1 6.1125 -0.8311 -1.1859 30 1 6.6959 0.3752 -0.0139 31 1 6.0429 -1.1787 0.5581 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238392536.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:56 Heat of formation + Delta-G solvation = -13.627825 kcal Electronic energy + Delta-G solvation = -14170.608441 eV Core-core repulsion = 11803.120113 eV Total energy + Delta-G solvation = -2367.488328 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.90552 -36.36356 -34.74654 -33.10249 -30.27323 -28.64666 -26.88902 -26.60622 -23.68567 -20.76081 -20.34076 -19.13038 -17.82508 -15.69593 -15.45346 -14.91616 -14.83131 -14.62575 -13.76832 -13.23585 -13.04301 -12.73784 -12.28332 -11.72606 -11.61593 -11.27540 -11.10308 -10.97463 -10.75310 -10.55925 -10.43125 -9.99192 -9.80522 -9.45076 -9.06930 -8.71781 -7.44953 -6.85500 -6.77953 -4.40637 2.68707 2.87766 3.03562 3.05361 3.07203 3.22440 3.89541 4.25603 4.57114 5.48536 5.64370 5.70511 5.75305 5.82351 5.95286 6.05579 6.21701 6.37174 6.43084 6.62629 6.81108 6.89801 7.01385 7.10627 7.19940 7.32352 7.35270 7.73209 7.94464 8.05282 8.19392 8.36617 8.64284 8.85781 8.97384 10.14500 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.034405 B = 0.008164 C = 0.006978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.631186 B = 3428.917472 C = 4011.401928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.114 4.114 3 C -0.025 4.025 4 C -0.231 4.231 5 C -0.069 4.069 6 C -0.187 4.187 7 C 0.137 3.863 8 C -0.463 4.463 9 H 0.077 0.923 10 C 0.077 3.923 11 N -0.789 5.789 12 Si 0.909 3.091 13 H -0.265 1.265 14 H -0.278 1.278 15 H -0.263 1.263 16 C -0.307 4.307 17 C 0.146 3.854 18 O -0.331 6.331 19 C 0.036 3.964 20 H 0.087 0.913 21 H 0.090 0.910 22 H 0.101 0.899 23 H 0.066 0.934 24 H 0.056 0.944 25 H 0.094 0.906 26 H 0.118 0.882 27 H 0.282 0.718 28 H 0.099 0.901 29 H 0.082 0.918 30 H 0.047 0.953 31 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.431 -3.477 -4.382 5.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C -0.132 4.132 3 C -0.062 4.062 4 C -0.232 4.232 5 C -0.087 4.087 6 C -0.206 4.206 7 C 0.134 3.866 8 C -0.492 4.492 9 H 0.095 0.905 10 C -0.141 4.141 11 N -0.414 5.414 12 Si 0.733 3.267 13 H -0.190 1.190 14 H -0.203 1.203 15 H -0.188 1.188 16 C -0.327 4.327 17 C 0.102 3.898 18 O -0.245 6.245 19 C -0.060 4.060 20 H 0.105 0.895 21 H 0.108 0.892 22 H 0.119 0.881 23 H 0.085 0.915 24 H 0.075 0.925 25 H 0.112 0.888 26 H 0.136 0.864 27 H 0.093 0.907 28 H 0.117 0.883 29 H 0.100 0.900 30 H 0.066 0.934 31 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.602 -3.250 -4.448 5.737 hybrid contribution 0.706 -0.081 1.017 1.240 sum -0.896 -3.330 -3.432 4.865 Atomic orbital electron populations 1.23625 0.95933 1.00821 1.06262 1.23122 0.95466 0.99292 0.95290 1.19268 0.96121 0.93721 0.97117 1.18258 0.93832 1.14072 0.97067 1.20377 0.97733 0.98034 0.92589 1.21253 0.93945 1.06831 0.98583 1.17374 0.91400 0.87410 0.90420 1.19543 1.13730 1.10969 1.04940 0.90524 1.25917 0.94249 0.93897 1.00039 1.69829 1.32231 1.04808 1.34490 0.86364 0.80312 0.78863 0.81175 1.18999 1.20256 1.18775 1.21003 0.99552 1.17482 0.94701 1.18525 0.93512 0.93920 0.83811 1.85910 1.32614 1.71504 1.34511 1.22768 0.84168 0.97537 1.01480 0.89476 0.89174 0.88061 0.91546 0.92545 0.88809 0.86377 0.90729 0.88298 0.89964 0.93388 0.93512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -3.52 14.32 29.01 0.42 -3.10 16 2 C -0.11 -1.99 9.50 -36.02 -0.34 -2.33 16 3 C -0.03 -0.48 5.50 -29.03 -0.16 -0.64 16 4 C -0.23 -5.27 5.15 -104.18 -0.54 -5.80 16 5 C -0.07 -1.64 9.64 -39.69 -0.38 -2.02 16 6 C -0.19 -4.90 8.69 -38.85 -0.34 -5.24 16 7 C 0.14 3.68 5.57 -106.85 -0.59 3.08 16 8 C -0.46 -12.28 9.05 -37.74 -0.34 -12.63 16 9 H 0.08 1.95 7.90 -52.48 -0.41 1.54 16 10 C 0.08 1.94 5.14 -17.35 -0.09 1.85 16 11 N -0.79 -20.32 10.97 55.55 0.61 -19.71 16 12 Si 0.91 18.53 29.59 -169.99 -5.03 13.50 16 13 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 14 H -0.28 -5.50 7.11 56.52 0.40 -5.09 16 15 H -0.26 -5.34 7.11 56.52 0.40 -4.93 16 16 C -0.31 -7.65 8.78 -38.73 -0.34 -7.99 16 17 C 0.15 3.42 6.65 -39.29 -0.26 3.16 16 18 O -0.33 -6.81 9.61 -19.45 -0.19 -7.00 16 19 C 0.04 0.59 9.81 101.05 0.99 1.58 16 20 H 0.09 1.18 8.06 -52.48 -0.42 0.76 16 21 H 0.09 1.30 7.84 -52.49 -0.41 0.88 16 22 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 23 H 0.07 1.25 7.67 -51.93 -0.40 0.86 16 24 H 0.06 1.01 7.70 -51.93 -0.40 0.61 16 25 H 0.09 2.01 8.06 -52.49 -0.42 1.59 16 26 H 0.12 3.17 6.18 -52.49 -0.32 2.85 16 27 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 28 H 0.10 2.30 6.28 -52.49 -0.33 1.97 16 29 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.05 0.78 7.65 -51.93 -0.40 0.38 16 31 H 0.05 0.74 7.66 -51.93 -0.40 0.35 16 LS Contribution 268.78 15.07 4.05 4.05 Total: -1.00 -27.73 268.78 -6.44 -34.16 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -3.90 Total: 5.08 kcal Atomic # 6 Polarization: -28.10 SS G_CDS: -1.98 Total: -30.08 kcal Atomic # 7 Polarization: -20.32 SS G_CDS: 0.61 Total: -19.71 kcal Atomic # 8 Polarization: -6.81 SS G_CDS: -0.19 Total: -7.00 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.03 Total: 13.50 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -27.73 -6.44 -34.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238392536.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.534 kcal (2) G-P(sol) polarization free energy of solvation -27.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds