Wall clock time and date at job start Mon Mar 30 2020 02:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50709 * 119.99414 * 2 1 4 4 C 1.50700 * 109.46681 * 125.00190 * 3 2 1 5 5 C 1.38558 * 119.78409 * 264.73234 * 4 3 2 6 6 C 1.37628 * 120.30850 * 179.72470 * 5 4 3 7 7 C 1.40765 * 119.85304 * 0.54585 * 6 5 4 8 8 C 1.41402 * 120.21413 * 179.75123 * 7 6 5 9 9 H 1.08003 * 119.99938 * 155.02648 * 8 7 6 10 10 C 1.39930 * 120.00119 * 335.02048 * 8 7 6 11 11 N 1.30827 * 120.00031 * 342.49250 * 10 8 7 12 12 Si 1.86811 * 120.00046 * 162.48880 * 10 8 7 13 13 H 1.48493 * 109.46924 * 60.00174 * 12 10 8 14 14 H 1.48497 * 109.46970 * 180.02562 * 12 10 8 15 15 H 1.48496 * 109.46860 * 300.00089 * 12 10 8 16 16 C 1.40597 * 119.56907 * 359.72473 * 7 6 5 17 17 C 1.38142 * 119.69053 * 0.02562 * 16 7 6 18 18 O 1.35906 * 119.92892 * 179.97438 * 17 16 7 19 19 C 1.42900 * 117.00145 * 0.02562 * 18 17 16 20 20 H 1.08004 * 119.99605 * 179.97438 * 1 2 3 21 21 H 1.07997 * 120.00556 * 359.71997 * 1 2 3 22 22 H 1.07998 * 120.00391 * 180.02562 * 2 1 3 23 23 H 1.08998 * 109.47410 * 245.00108 * 3 2 1 24 24 H 1.08997 * 109.47128 * 5.00916 * 3 2 1 25 25 H 1.08002 * 119.84617 * 359.97438 * 5 4 3 26 26 H 1.07998 * 120.07024 * 180.27234 * 6 5 4 27 27 H 0.96998 * 119.99915 * 180.02562 * 11 10 8 28 28 H 1.07995 * 120.15869 * 180.02562 * 16 7 6 29 29 H 1.08999 * 109.47071 * 179.97438 * 19 18 17 30 30 H 1.08995 * 109.46947 * 299.99558 * 19 18 17 31 31 H 1.08996 * 109.46993 * 60.00194 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3053 0.0000 4 6 3.0204 1.3328 1.1639 5 6 2.6416 1.9364 2.3522 6 6 3.5049 1.9628 3.4237 7 6 4.7828 1.3839 3.3085 8 6 5.6777 1.4114 4.4029 9 1 6.4531 0.6640 4.4853 10 6 5.5590 2.4068 5.3791 11 7 4.8722 3.4915 5.1272 12 14 6.3809 2.1870 7.0422 13 1 7.8468 2.0418 6.8545 14 1 6.1053 3.3737 7.8913 15 1 5.8435 0.9706 7.7030 16 6 5.1634 0.7779 2.0983 17 6 4.2804 0.7573 1.0360 18 8 4.6435 0.1732 -0.1362 19 6 5.9513 -0.3992 -0.1982 20 1 -0.5400 -0.9354 -0.0004 21 1 -0.5401 0.9352 0.0046 22 1 1.8501 -0.9353 -0.0004 23 1 2.6212 1.4029 -0.9314 24 1 1.3585 2.1317 0.0897 25 1 1.6630 2.3848 2.4392 26 1 3.2040 2.4305 4.3496 27 1 4.7902 4.1817 5.8037 28 1 6.1413 0.3306 1.9995 29 1 6.1125 -0.8311 -1.1859 30 1 6.6959 0.3752 -0.0139 31 1 6.0429 -1.1787 0.5581 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238392536.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:56 Heat of formation + Delta-G solvation = -28.043195 kcal Electronic energy + Delta-G solvation = -14171.233539 eV Core-core repulsion = 11803.120113 eV Total energy + Delta-G solvation = -2368.113426 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.63580 -38.10472 -36.34940 -34.82431 -32.01377 -30.45107 -28.64171 -28.05287 -25.43296 -22.57396 -22.12037 -20.50567 -19.65413 -17.53646 -17.17193 -16.52323 -16.39587 -16.22566 -15.37042 -14.95731 -14.56428 -14.32094 -13.97614 -13.40236 -13.37247 -12.87172 -12.71874 -12.48358 -12.39786 -12.08025 -11.97028 -11.78005 -11.56083 -11.25173 -10.91897 -10.07067 -9.35305 -8.70349 -8.64691 -6.37922 0.91612 1.14389 1.37249 1.47582 1.50388 1.61564 2.19275 2.68710 2.70938 3.67977 4.19390 4.35795 4.44215 4.44794 4.47652 4.59441 4.70861 4.73747 4.98251 5.01041 5.10940 5.12097 5.22462 5.30137 5.46420 5.77553 5.86616 5.99702 6.06736 6.17334 6.29704 6.51284 6.75057 6.91037 7.08490 8.30832 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.034405 B = 0.008164 C = 0.006978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.631186 B = 3428.917472 C = 4011.401928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.143 4.143 3 C -0.020 4.020 4 C -0.232 4.232 5 C -0.071 4.071 6 C -0.214 4.214 7 C 0.105 3.895 8 C -0.500 4.500 9 H 0.075 0.925 10 C 0.037 3.963 11 N -0.821 5.821 12 Si 0.983 3.017 13 H -0.259 1.259 14 H -0.266 1.266 15 H -0.261 1.261 16 C -0.323 4.323 17 C 0.143 3.857 18 O -0.333 6.333 19 C 0.028 3.972 20 H 0.108 0.892 21 H 0.103 0.897 22 H 0.094 0.906 23 H 0.066 0.934 24 H 0.070 0.930 25 H 0.115 0.885 26 H 0.103 0.897 27 H 0.290 0.710 28 H 0.105 0.895 29 H 0.124 0.876 30 H 0.045 0.955 31 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.022 -4.001 -4.916 6.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.162 4.162 3 C -0.057 4.057 4 C -0.233 4.233 5 C -0.089 4.089 6 C -0.233 4.233 7 C 0.103 3.897 8 C -0.529 4.529 9 H 0.093 0.907 10 C -0.179 4.179 11 N -0.446 5.446 12 Si 0.804 3.196 13 H -0.183 1.183 14 H -0.190 1.190 15 H -0.185 1.185 16 C -0.343 4.343 17 C 0.099 3.901 18 O -0.248 6.248 19 C -0.067 4.067 20 H 0.127 0.873 21 H 0.121 0.879 22 H 0.112 0.888 23 H 0.085 0.915 24 H 0.088 0.912 25 H 0.133 0.867 26 H 0.121 0.879 27 H 0.100 0.900 28 H 0.123 0.877 29 H 0.142 0.858 30 H 0.064 0.936 31 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.193 -3.780 -5.010 6.648 hybrid contribution 0.821 0.037 1.008 1.301 sum -1.372 -3.743 -4.002 5.649 Atomic orbital electron populations 1.23900 0.95126 1.02492 1.02254 1.22938 0.96258 0.98067 0.98900 1.19242 0.95730 0.95357 0.95325 1.18744 0.94438 1.12270 0.97877 1.20640 0.98256 0.97684 0.92342 1.21223 0.94631 1.08466 0.99023 1.17738 0.92056 0.88472 0.91476 1.19798 1.14566 1.12080 1.06488 0.90697 1.26779 0.94696 0.92977 1.03415 1.69881 1.33266 1.05518 1.35921 0.85240 0.79286 0.79062 0.76048 1.18303 1.18972 1.18517 1.21179 1.00394 1.17851 0.94853 1.18677 0.93568 0.93569 0.84283 1.85905 1.34781 1.71168 1.32906 1.23096 0.82142 0.97389 1.04050 0.87349 0.87876 0.88820 0.91529 0.91175 0.86659 0.87933 0.89975 0.87650 0.85765 0.93634 0.93386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.47 14.32 67.78 0.97 -4.50 16 2 C -0.14 -4.72 9.50 25.65 0.24 -4.48 16 3 C -0.02 -0.71 5.50 29.10 0.16 -0.55 16 4 C -0.23 -10.47 5.15 -19.58 -0.10 -10.57 16 5 C -0.07 -3.39 9.64 22.20 0.21 -3.17 16 6 C -0.21 -11.57 8.69 22.74 0.20 -11.38 16 7 C 0.11 5.85 5.57 -21.31 -0.12 5.73 16 8 C -0.50 -27.47 9.05 23.46 0.21 -27.25 16 9 H 0.07 3.95 7.90 -2.91 -0.02 3.93 16 10 C 0.04 1.88 5.14 85.25 0.44 2.32 16 11 N -0.82 -43.29 10.97 21.82 0.24 -43.05 16 12 Si 0.98 38.25 29.59 68.60 2.03 40.28 16 13 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 14 H -0.27 -9.70 7.11 99.48 0.71 -8.99 16 15 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 16 C -0.32 -16.42 8.78 22.82 0.20 -16.22 16 17 C 0.14 6.71 6.65 22.46 0.15 6.86 16 18 O -0.33 -13.35 9.61 -92.50 -0.89 -14.24 16 19 C 0.03 0.87 9.81 113.37 1.11 1.98 16 20 H 0.11 2.50 8.06 -2.91 -0.02 2.48 16 21 H 0.10 2.55 7.84 -2.91 -0.02 2.53 16 22 H 0.09 3.20 8.06 -2.91 -0.02 3.18 16 23 H 0.07 2.40 7.67 -2.39 -0.02 2.38 16 24 H 0.07 2.33 7.70 -2.39 -0.02 2.31 16 25 H 0.12 4.86 8.06 -2.91 -0.02 4.84 16 26 H 0.10 5.75 6.18 -2.91 -0.02 5.73 16 27 H 0.29 13.76 8.30 -92.71 -0.77 12.99 16 28 H 0.11 5.03 6.28 -2.91 -0.02 5.01 16 29 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 30 H 0.04 1.44 7.65 -2.39 -0.02 1.42 16 31 H 0.05 1.48 7.66 -2.39 -0.02 1.46 16 Total: -1.00 -60.61 268.78 6.17 -54.45 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: 1.11 Total: 23.80 kcal Atomic # 6 Polarization: -64.91 SS G_CDS: 3.68 Total: -61.23 kcal Atomic # 7 Polarization: -43.29 SS G_CDS: 0.24 Total: -43.05 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: -0.89 Total: -14.24 kcal Atomic # 14 Polarization: 38.25 SS G_CDS: 2.03 Total: 40.28 kcal Total: -60.61 6.17 -54.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238392536.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.403 kcal (2) G-P(sol) polarization free energy of solvation -60.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds