Wall clock time and date at job start Mon Mar 30 2020 02:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30983 * 1 3 3 Si 1.86799 * 120.00008 * 2 1 4 4 H 1.48502 * 109.46920 * 269.99910 * 3 2 1 5 5 H 1.48499 * 109.47015 * 29.99741 * 3 2 1 6 6 H 1.48495 * 109.46776 * 150.00316 * 3 2 1 7 7 C 1.40063 * 119.99690 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99863 * 179.97438 * 7 2 1 9 9 N 1.33452 * 120.00452 * 0.02562 * 7 2 1 10 10 C 1.31580 * 120.00458 * 179.97438 * 9 7 2 11 11 N 1.36255 * 120.00495 * 179.97438 * 10 9 7 12 12 C 1.46499 * 119.99821 * 359.97438 * 11 10 9 13 13 C 1.52998 * 109.47387 * 180.02562 * 12 11 10 14 14 C 1.50701 * 109.47174 * 179.97438 * 13 12 11 15 15 C 1.38235 * 119.99808 * 89.99739 * 14 13 12 16 16 C 1.38243 * 119.99602 * 179.97438 * 15 14 13 17 17 C 1.38231 * 120.00070 * 0.07188 * 16 15 14 18 18 C 1.38234 * 119.99892 * 359.90902 * 17 16 15 19 19 C 1.38230 * 119.99865 * 269.97485 * 14 13 12 20 20 H 0.96999 * 119.99942 * 0.02562 * 1 2 3 21 21 H 1.08005 * 119.99860 * 359.97438 * 10 9 7 22 22 H 0.96999 * 120.00237 * 179.97438 * 11 10 9 23 23 H 1.09001 * 109.47369 * 59.99874 * 12 11 10 24 24 H 1.09001 * 109.47043 * 300.00406 * 12 11 10 25 25 H 1.08993 * 109.47576 * 59.99408 * 13 12 11 26 26 H 1.09001 * 109.46567 * 299.99362 * 13 12 11 27 27 H 1.08000 * 120.00616 * 359.70324 * 15 14 13 28 28 H 1.08001 * 119.99556 * 179.97438 * 16 15 14 29 29 H 1.07997 * 119.99633 * 179.97438 * 17 16 15 30 30 H 1.07999 * 119.99751 * 180.02562 * 18 17 16 31 31 H 1.08001 * 120.00371 * 0.02562 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3098 0.0000 0.0000 3 14 2.2438 1.6177 0.0000 4 1 2.4913 2.0464 -1.4001 5 1 1.4412 2.6526 0.7000 6 1 3.5413 1.4401 0.7000 7 6 2.0101 -1.2130 0.0005 8 1 3.0901 -1.2130 0.0001 9 7 1.3428 -2.3688 0.0005 10 6 2.0007 -3.5083 0.0005 11 7 1.3194 -4.6883 0.0011 12 6 -0.1455 -4.6883 0.0022 13 6 -0.6556 -6.1308 0.0032 14 6 -2.1626 -6.1307 0.0050 15 6 -2.8552 -6.1310 -1.1913 16 6 -4.2376 -6.1315 -1.1896 17 6 -4.9273 -6.1302 0.0084 18 6 -4.2346 -6.1303 1.2047 19 6 -2.8523 -6.1309 1.2030 20 1 -0.4850 0.8400 -0.0004 21 1 3.0807 -3.5083 0.0001 22 1 1.8044 -5.5284 0.0007 23 1 -0.5096 -4.1745 -0.8875 24 1 -0.5082 -4.1744 0.8924 25 1 -0.2916 -6.6443 0.8930 26 1 -0.2930 -6.6449 -0.8869 27 1 -2.3164 -6.1264 -2.1273 28 1 -4.7787 -6.1313 -2.1243 29 1 -6.0073 -6.1302 0.0096 30 1 -4.7735 -6.1297 2.1406 31 1 -2.3112 -6.1306 2.1377 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238550134.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:33 Heat of formation + Delta-G solvation = 35.812677 kcal Electronic energy + Delta-G solvation = -13464.313831 eV Core-core repulsion = 11131.262155 eV Total energy + Delta-G solvation = -2333.051676 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.09152 -36.02356 -34.06420 -32.49847 -30.72857 -30.70474 -27.72586 -24.44991 -22.92324 -22.38666 -20.62983 -19.39630 -16.78132 -16.58560 -15.22173 -15.13353 -15.06121 -14.78616 -13.70817 -13.56326 -13.15400 -12.99112 -12.60470 -12.28999 -11.49199 -11.39888 -11.16213 -11.10741 -11.03899 -10.76539 -10.61649 -10.31242 -10.04976 -8.83425 -8.72758 -8.46737 -7.11721 -6.92225 -6.49107 -3.66453 1.55140 1.58569 3.07985 3.17728 3.22374 3.96808 4.09866 4.22421 4.83071 5.02748 5.13217 5.25440 5.42239 5.53528 5.71054 5.82368 5.83925 5.94993 6.01224 6.22410 6.27484 6.63881 6.66371 6.72834 6.90568 6.98560 7.16506 7.20565 7.31438 7.63598 8.21629 8.85774 9.21783 9.58785 10.46997 11.12477 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.035492 B = 0.005606 C = 0.005115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.716742 B = 4993.566620 C = 5472.498805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.070 3.930 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.304 4.304 8 H 0.040 0.960 9 N -0.406 5.406 10 C 0.085 3.915 11 N -0.744 5.744 12 C 0.163 3.837 13 C -0.094 4.094 14 C -0.066 4.066 15 C -0.115 4.115 16 C -0.121 4.121 17 C -0.131 4.131 18 C -0.121 4.121 19 C -0.115 4.115 20 H 0.271 0.729 21 H 0.075 0.925 22 H 0.379 0.621 23 H 0.045 0.955 24 H 0.045 0.955 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.121 0.879 28 H 0.118 0.882 29 H 0.117 0.883 30 H 0.118 0.882 31 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.642 -10.811 0.013 12.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.147 4.147 3 Si 0.744 3.256 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.451 4.451 8 H 0.057 0.943 9 N -0.123 5.123 10 C -0.197 4.197 11 N -0.389 5.389 12 C 0.037 3.963 13 C -0.132 4.132 14 C -0.067 4.067 15 C -0.133 4.133 16 C -0.139 4.139 17 C -0.150 4.150 18 C -0.139 4.139 19 C -0.133 4.133 20 H 0.082 0.918 21 H 0.092 0.908 22 H 0.210 0.790 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.139 0.861 28 H 0.136 0.864 29 H 0.135 0.865 30 H 0.136 0.864 31 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -7.783 -10.200 0.019 12.831 hybrid contribution 1.427 0.581 -0.009 1.541 sum -6.356 -9.619 0.010 11.529 Atomic orbital electron populations 1.69832 1.07269 1.27921 1.37035 1.25913 0.94847 1.00293 0.93656 0.86117 0.79944 0.80657 0.78927 1.19701 1.20290 1.18887 1.19806 0.90683 0.88835 1.45826 0.94280 1.66521 1.39546 0.97057 1.09155 1.21443 0.90162 0.86098 1.21960 1.42837 1.03089 1.04692 1.88277 1.20613 0.82795 0.91731 1.01130 1.20890 0.90682 0.99243 1.02400 1.19852 0.95689 0.98023 0.93127 1.21087 0.94187 1.00259 0.97802 1.21102 0.94361 1.00499 0.97904 1.21071 0.99531 1.01601 0.92754 1.21100 0.94347 1.00499 0.97919 1.21083 0.94204 1.00260 0.97781 0.91837 0.90834 0.78963 0.93711 0.93720 0.91183 0.91179 0.86097 0.86379 0.86540 0.86379 0.86101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -23.43 13.60 55.56 0.76 -22.67 16 2 C 0.07 1.98 5.52 -17.23 -0.10 1.89 16 3 Si 0.92 20.57 29.56 -169.99 -5.03 15.54 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 6 H -0.26 -5.80 7.11 56.52 0.40 -5.39 16 7 C -0.30 -9.12 9.74 -16.16 -0.16 -9.28 16 8 H 0.04 1.15 7.74 -52.49 -0.41 0.74 16 9 N -0.41 -12.26 9.19 -12.98 -0.12 -12.38 16 10 C 0.08 2.22 11.67 -88.35 -1.03 1.19 16 11 N -0.74 -15.95 5.62 -61.96 -0.35 -16.30 16 12 C 0.16 3.37 5.62 -4.04 -0.02 3.35 16 13 C -0.09 -1.44 5.46 -27.88 -0.15 -1.59 16 14 C -0.07 -1.00 5.13 -104.63 -0.54 -1.54 16 15 C -0.12 -1.65 9.70 -39.58 -0.38 -2.03 16 16 C -0.12 -1.56 10.05 -39.58 -0.40 -1.96 16 17 C -0.13 -1.63 10.05 -39.59 -0.40 -2.03 16 18 C -0.12 -1.56 10.05 -39.58 -0.40 -1.96 16 19 C -0.12 -1.65 9.70 -39.59 -0.38 -2.03 16 20 H 0.27 7.22 8.30 -40.82 -0.34 6.89 16 21 H 0.07 1.86 7.95 -52.48 -0.42 1.45 16 22 H 0.38 6.68 8.59 -40.82 -0.35 6.33 16 23 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 24 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 26 H 0.07 0.97 8.09 -51.93 -0.42 0.55 16 27 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 28 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 29 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 30 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 31 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 277.30 15.07 4.18 4.18 Total: -1.00 -33.07 277.30 -8.62 -41.69 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -4.11 Total: 5.94 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: -3.96 Total: -16.00 kcal Atomic # 7 Polarization: -51.64 SS G_CDS: 0.29 Total: -51.35 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.03 Total: 15.54 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -33.07 -8.62 -41.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238550134.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.502 kcal (2) G-P(sol) polarization free energy of solvation -33.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds