Wall clock time and date at job start Mon Mar 30 2020 02:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30983 * 1 3 3 Si 1.86799 * 120.00008 * 2 1 4 4 H 1.48502 * 109.46920 * 269.99910 * 3 2 1 5 5 H 1.48499 * 109.47015 * 29.99741 * 3 2 1 6 6 H 1.48495 * 109.46776 * 150.00316 * 3 2 1 7 7 C 1.40063 * 119.99690 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99863 * 179.97438 * 7 2 1 9 9 N 1.33452 * 120.00452 * 0.02562 * 7 2 1 10 10 C 1.31580 * 120.00458 * 179.97438 * 9 7 2 11 11 N 1.36255 * 120.00495 * 179.97438 * 10 9 7 12 12 C 1.46499 * 119.99821 * 359.97438 * 11 10 9 13 13 C 1.52998 * 109.47387 * 180.02562 * 12 11 10 14 14 C 1.50701 * 109.47174 * 179.97438 * 13 12 11 15 15 C 1.38235 * 119.99808 * 89.99739 * 14 13 12 16 16 C 1.38243 * 119.99602 * 179.97438 * 15 14 13 17 17 C 1.38231 * 120.00070 * 0.07188 * 16 15 14 18 18 C 1.38234 * 119.99892 * 359.90902 * 17 16 15 19 19 C 1.38230 * 119.99865 * 269.97485 * 14 13 12 20 20 H 0.96999 * 119.99942 * 0.02562 * 1 2 3 21 21 H 1.08005 * 119.99860 * 359.97438 * 10 9 7 22 22 H 0.96999 * 120.00237 * 179.97438 * 11 10 9 23 23 H 1.09001 * 109.47369 * 59.99874 * 12 11 10 24 24 H 1.09001 * 109.47043 * 300.00406 * 12 11 10 25 25 H 1.08993 * 109.47576 * 59.99408 * 13 12 11 26 26 H 1.09001 * 109.46567 * 299.99362 * 13 12 11 27 27 H 1.08000 * 120.00616 * 359.70324 * 15 14 13 28 28 H 1.08001 * 119.99556 * 179.97438 * 16 15 14 29 29 H 1.07997 * 119.99633 * 179.97438 * 17 16 15 30 30 H 1.07999 * 119.99751 * 180.02562 * 18 17 16 31 31 H 1.08001 * 120.00371 * 0.02562 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3098 0.0000 0.0000 3 14 2.2438 1.6177 0.0000 4 1 2.4913 2.0464 -1.4001 5 1 1.4412 2.6526 0.7000 6 1 3.5413 1.4401 0.7000 7 6 2.0101 -1.2130 0.0005 8 1 3.0901 -1.2130 0.0001 9 7 1.3428 -2.3688 0.0005 10 6 2.0007 -3.5083 0.0005 11 7 1.3194 -4.6883 0.0011 12 6 -0.1455 -4.6883 0.0022 13 6 -0.6556 -6.1308 0.0032 14 6 -2.1626 -6.1307 0.0050 15 6 -2.8552 -6.1310 -1.1913 16 6 -4.2376 -6.1315 -1.1896 17 6 -4.9273 -6.1302 0.0084 18 6 -4.2346 -6.1303 1.2047 19 6 -2.8523 -6.1309 1.2030 20 1 -0.4850 0.8400 -0.0004 21 1 3.0807 -3.5083 0.0001 22 1 1.8044 -5.5284 0.0007 23 1 -0.5096 -4.1745 -0.8875 24 1 -0.5082 -4.1744 0.8924 25 1 -0.2916 -6.6443 0.8930 26 1 -0.2930 -6.6449 -0.8869 27 1 -2.3164 -6.1264 -2.1273 28 1 -4.7787 -6.1313 -2.1243 29 1 -6.0073 -6.1302 0.0096 30 1 -4.7735 -6.1297 2.1406 31 1 -2.3112 -6.1306 2.1377 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238550134.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:33 Heat of formation + Delta-G solvation = 15.785678 kcal Electronic energy + Delta-G solvation = -13465.182267 eV Core-core repulsion = 11131.262155 eV Total energy + Delta-G solvation = -2333.920112 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.16109 -37.91756 -35.93938 -34.17239 -32.56471 -31.72614 -29.18194 -26.50897 -24.45402 -23.41895 -21.82462 -21.41838 -18.92799 -17.66139 -17.13618 -16.82201 -16.34085 -16.04640 -15.40194 -15.03017 -14.70839 -14.20334 -13.80295 -13.72532 -13.33628 -13.30617 -13.01759 -12.69411 -12.48241 -12.06724 -12.03703 -11.82516 -11.70110 -10.84707 -9.77454 -9.56451 -9.15582 -9.11368 -8.56630 -5.84019 0.48749 0.54671 1.31921 1.36072 1.52557 2.18094 2.23886 2.88514 3.24977 3.74813 3.98219 4.05499 4.22012 4.33675 4.34873 4.38998 4.67997 4.74681 4.74697 4.95187 5.10793 5.15286 5.18278 5.25288 5.34417 5.59209 5.64401 5.65322 5.79001 6.04313 6.17930 6.82733 7.36257 7.53116 8.43151 9.01805 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.035492 B = 0.005606 C = 0.005115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.716742 B = 4993.566620 C = 5472.498805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.017 3.983 3 Si 1.004 2.996 4 H -0.261 1.261 5 H -0.265 1.265 6 H -0.257 1.257 7 C -0.348 4.348 8 H 0.038 0.962 9 N -0.461 5.461 10 C 0.108 3.892 11 N -0.731 5.731 12 C 0.174 3.826 13 C -0.076 4.076 14 C -0.091 4.091 15 C -0.132 4.132 16 C -0.128 4.128 17 C -0.132 4.132 18 C -0.128 4.128 19 C -0.132 4.132 20 H 0.280 0.720 21 H 0.087 0.913 22 H 0.402 0.598 23 H 0.010 0.990 24 H 0.010 0.990 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.126 0.874 28 H 0.142 0.858 29 H 0.146 0.854 30 H 0.142 0.858 31 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.796 -11.308 0.010 13.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.195 4.195 3 Si 0.823 3.177 4 H -0.185 1.185 5 H -0.189 1.189 6 H -0.181 1.181 7 C -0.493 4.493 8 H 0.056 0.944 9 N -0.179 5.179 10 C -0.176 4.176 11 N -0.377 5.377 12 C 0.048 3.952 13 C -0.113 4.113 14 C -0.092 4.092 15 C -0.150 4.150 16 C -0.146 4.146 17 C -0.150 4.150 18 C -0.146 4.146 19 C -0.150 4.150 20 H 0.089 0.911 21 H 0.103 0.897 22 H 0.237 0.763 23 H 0.029 0.971 24 H 0.029 0.971 25 H 0.106 0.894 26 H 0.106 0.894 27 H 0.144 0.856 28 H 0.159 0.841 29 H 0.163 0.837 30 H 0.159 0.841 31 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.930 -10.736 0.015 13.347 hybrid contribution 1.439 0.521 -0.009 1.530 sum -6.492 -10.215 0.006 12.103 Atomic orbital electron populations 1.69921 1.09208 1.29569 1.38583 1.27066 0.95851 1.04185 0.92428 0.84867 0.78400 0.74902 0.79502 1.18532 1.18888 1.18120 1.20173 0.90889 0.89937 1.48340 0.94414 1.66643 1.40693 0.98271 1.12322 1.21950 0.91159 0.86720 1.17788 1.42894 1.03721 1.04436 1.86654 1.20452 0.82028 0.94969 0.97793 1.20694 0.91166 0.95317 1.04129 1.19931 0.95480 0.99807 0.93951 1.21313 0.95216 1.00671 0.97810 1.21454 0.93991 0.99748 0.99359 1.21485 1.01126 1.00122 0.92292 1.21452 0.93976 0.99748 0.99376 1.21310 0.95234 1.00670 0.97791 0.91053 0.89669 0.76314 0.97121 0.97128 0.89395 0.89391 0.85633 0.84054 0.83672 0.84054 0.85628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -51.25 13.60 21.87 0.30 -50.95 16 2 C 0.02 0.96 5.52 85.26 0.47 1.43 16 3 Si 1.00 42.55 29.56 68.60 2.03 44.58 16 4 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 5 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 6 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 7 C -0.35 -21.42 9.74 84.89 0.83 -20.60 16 8 H 0.04 2.26 7.74 -2.91 -0.02 2.24 16 9 N -0.46 -28.62 9.19 -194.98 -1.79 -30.42 16 10 C 0.11 5.69 11.67 179.56 2.10 7.78 16 11 N -0.73 -30.97 5.62 -349.95 -1.97 -32.94 16 12 C 0.17 7.30 5.62 86.38 0.49 7.78 16 13 C -0.08 -2.24 5.46 29.85 0.16 -2.08 16 14 C -0.09 -2.72 5.13 -19.87 -0.10 -2.82 16 15 C -0.13 -3.69 9.70 22.27 0.22 -3.48 16 16 C -0.13 -3.09 10.05 22.27 0.22 -2.87 16 17 C -0.13 -3.00 10.05 22.27 0.22 -2.78 16 18 C -0.13 -3.09 10.05 22.27 0.22 -2.87 16 19 C -0.13 -3.69 9.70 22.27 0.22 -3.48 16 20 H 0.28 15.22 8.30 -92.71 -0.77 14.45 16 21 H 0.09 4.26 7.95 -2.91 -0.02 4.23 16 22 H 0.40 13.39 8.59 -92.71 -0.80 12.59 16 23 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 24 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 25 H 0.09 2.29 8.08 -2.39 -0.02 2.27 16 26 H 0.09 2.29 8.09 -2.39 -0.02 2.27 16 27 H 0.13 3.25 8.06 -2.91 -0.02 3.23 16 28 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 29 H 0.15 2.40 8.06 -2.91 -0.02 2.37 16 30 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 31 H 0.13 3.25 8.06 -2.91 -0.02 3.23 16 Total: -1.00 -73.81 277.30 3.93 -69.89 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: 0.31 Total: 23.82 kcal Atomic # 6 Polarization: -29.02 SS G_CDS: 5.04 Total: -23.97 kcal Atomic # 7 Polarization: -110.85 SS G_CDS: -3.46 Total: -114.31 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -73.81 3.93 -69.89 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238550134.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.672 kcal (2) G-P(sol) polarization free energy of solvation -73.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds