Wall clock time and date at job start Mon Mar 30 2020 02:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30733 * 1 3 3 Si 1.86803 * 120.00084 * 2 1 4 4 H 1.48493 * 109.46849 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46822 * 299.99669 * 3 2 1 6 6 H 1.48508 * 109.47106 * 59.99847 * 3 2 1 7 7 C 1.40034 * 119.99975 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00204 * 186.28786 * 7 2 1 9 9 C 1.41408 * 120.00189 * 6.28470 * 7 2 1 10 10 C 1.40649 * 119.82973 * 173.71311 * 9 7 2 11 11 C 1.38151 * 118.97790 * 180.02562 * 10 9 7 12 12 C 1.38964 * 118.59402 * 359.72815 * 11 10 9 13 13 C 1.38753 * 119.55364 * 0.51261 * 12 11 10 14 14 C 1.50701 * 119.49308 * 179.75243 * 13 12 11 15 15 H 1.09003 * 110.45907 * 243.76709 * 14 13 12 16 16 C 1.54388 * 110.41207 * 121.35843 * 14 13 12 17 17 C 1.54259 * 105.05932 * 217.36786 * 16 14 13 18 18 C 1.54379 * 105.05934 * 359.97438 * 17 16 14 19 19 N 1.48552 * 110.41182 * 6.18630 * 14 13 12 20 20 N 1.31427 * 121.01222 * 359.47406 * 13 12 11 21 21 H 0.97005 * 120.00165 * 359.97438 * 1 2 3 22 22 H 1.07995 * 120.51502 * 0.02562 * 10 9 7 23 23 H 1.08000 * 120.70195 * 180.02562 * 11 10 9 24 24 H 1.07994 * 120.22404 * 180.29076 * 12 11 10 25 25 H 1.08999 * 110.31909 * 336.26215 * 16 14 13 26 26 H 1.08991 * 110.32412 * 98.36743 * 16 14 13 27 27 H 1.09000 * 110.32084 * 118.89326 * 17 16 14 28 28 H 1.09000 * 110.32520 * 241.10059 * 17 16 14 29 29 H 1.09001 * 110.41352 * 265.06884 * 18 17 16 30 30 H 1.09007 * 110.41191 * 142.63142 * 18 17 16 31 31 H 1.00899 * 111.00150 * 277.81734 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7013 1.3463 0.0006 5 1 1.8827 2.3963 -1.2125 6 1 1.8826 2.3965 1.2125 7 6 2.0075 -1.2127 0.0005 8 1 3.0827 -1.2155 0.1030 9 6 1.3069 -2.4338 -0.1330 10 6 2.0201 -3.6388 -0.2652 11 6 1.3178 -4.8214 -0.3950 12 6 -0.0710 -4.7748 -0.3842 13 6 -0.7138 -3.5519 -0.2552 14 6 -2.2200 -3.5024 -0.2493 15 1 -2.5863 -2.9453 -1.1117 16 6 -2.7326 -2.8655 1.0604 17 6 -4.0072 -3.6570 1.4188 18 6 -4.1578 -4.7050 0.2953 19 7 -2.7835 -4.8769 -0.2427 20 7 -0.0292 -2.4367 -0.1328 21 1 -0.4850 0.8401 0.0004 22 1 3.1000 -3.6396 -0.2652 23 1 1.8372 -5.7627 -0.4979 24 1 -0.6462 -5.6839 -0.4791 25 1 -1.9876 -2.9702 1.8491 26 1 -2.9702 -1.8137 0.9021 27 1 -3.8878 -4.1501 2.3835 28 1 -4.8722 -2.9940 1.4361 29 1 -4.8276 -4.3361 -0.4815 30 1 -4.5273 -5.6469 0.7011 31 1 -2.8059 -5.2630 -1.1746 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238552950.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:38 Heat of formation + Delta-G solvation = 13.897521 kcal Electronic energy + Delta-G solvation = -14443.641340 eV Core-core repulsion = 12109.639351 eV Total energy + Delta-G solvation = -2334.001989 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.46143 -38.74563 -35.45343 -32.78523 -32.19031 -31.09236 -29.17912 -27.24053 -23.82997 -23.29622 -21.67636 -20.98319 -19.25679 -17.63742 -17.39645 -16.45942 -16.09588 -15.98658 -15.10082 -14.74013 -14.11735 -14.00243 -13.60777 -13.22737 -13.02045 -12.93696 -12.73307 -12.58182 -12.33087 -12.10456 -12.01748 -11.67059 -11.37079 -11.15353 -10.04144 -9.63328 -9.37889 -9.29836 -8.25818 -6.46996 0.91330 1.19656 1.39909 1.52858 1.55382 2.23711 2.85821 3.22103 3.75609 3.89322 4.01339 4.15406 4.32141 4.39609 4.46618 4.68820 4.80838 4.90082 4.94256 5.02098 5.06144 5.12376 5.24128 5.25415 5.33589 5.52494 5.72446 5.84616 6.04188 6.21022 6.34398 6.47210 6.78350 7.01621 8.23896 8.48362 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.032942 B = 0.009414 C = 0.007569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.783725 B = 2973.686103 C = 3698.271848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.754 5.754 2 C 0.026 3.974 3 Si 0.985 3.015 4 H -0.256 1.256 5 H -0.267 1.267 6 H -0.266 1.266 7 C -0.475 4.475 8 H 0.084 0.916 9 C 0.222 3.778 10 C -0.302 4.302 11 C -0.066 4.066 12 C -0.288 4.288 13 C 0.135 3.865 14 C 0.133 3.867 15 H 0.045 0.955 16 C -0.095 4.095 17 C -0.119 4.119 18 C 0.040 3.960 19 N -0.662 5.662 20 N -0.508 5.508 21 H 0.277 0.723 22 H 0.105 0.895 23 H 0.129 0.871 24 H 0.131 0.869 25 H 0.035 0.965 26 H 0.058 0.942 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.053 0.947 30 H 0.099 0.901 31 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.812 -3.707 -0.007 7.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.376 5.376 2 C -0.195 4.195 3 Si 0.805 3.195 4 H -0.180 1.180 5 H -0.191 1.191 6 H -0.191 1.191 7 C -0.507 4.507 8 H 0.102 0.898 9 C 0.096 3.904 10 C -0.324 4.324 11 C -0.091 4.091 12 C -0.311 4.311 13 C -0.010 4.010 14 C 0.022 3.978 15 H 0.063 0.937 16 C -0.134 4.134 17 C -0.157 4.157 18 C -0.089 4.089 19 N -0.292 5.292 20 N -0.222 5.222 21 H 0.087 0.913 22 H 0.123 0.877 23 H 0.147 0.853 24 H 0.149 0.851 25 H 0.054 0.946 26 H 0.077 0.923 27 H 0.090 0.910 28 H 0.104 0.896 29 H 0.072 0.928 30 H 0.117 0.883 31 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -7.089 -3.041 0.704 7.745 hybrid contribution 0.683 0.358 -0.873 1.165 sum -6.406 -2.682 -0.169 6.947 Atomic orbital electron populations 1.70239 1.08678 1.28703 1.29996 1.26928 0.95757 1.04269 0.92576 0.85131 0.79383 0.76226 0.78764 1.17983 1.19142 1.19057 1.19920 0.94923 0.90650 1.45197 0.89786 1.19010 0.88758 0.93194 0.89400 1.21928 0.99274 0.94354 1.16834 1.21309 0.94594 0.97209 0.95945 1.21471 0.94278 0.98662 1.16642 1.21401 0.95804 0.89878 0.93959 1.20842 0.89611 0.89767 0.97572 0.93699 1.21961 0.97055 0.98856 0.95482 1.22349 0.96635 0.97383 0.99306 1.22982 0.89206 0.99934 0.96783 1.63521 1.18146 1.19060 1.28435 1.68381 1.07651 1.27556 1.18590 0.91292 0.87666 0.85269 0.85143 0.94612 0.92271 0.90957 0.89569 0.92831 0.88292 0.84123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -41.34 11.49 21.84 0.25 -41.09 16 2 C 0.03 1.37 5.49 85.29 0.47 1.84 16 3 Si 0.98 39.23 29.56 68.60 2.03 41.26 16 4 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 5 H -0.27 -10.21 7.11 99.48 0.71 -9.51 16 6 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 7 C -0.48 -26.86 9.14 23.49 0.21 -26.64 16 8 H 0.08 4.49 7.86 -2.91 -0.02 4.46 16 9 C 0.22 12.89 6.55 40.24 0.26 13.15 16 10 C -0.30 -15.65 9.84 22.84 0.22 -15.43 16 11 C -0.07 -3.06 10.16 22.42 0.23 -2.83 16 12 C -0.29 -13.27 9.42 22.57 0.21 -13.06 16 13 C 0.13 6.70 6.02 42.74 0.26 6.96 16 14 C 0.13 5.37 3.64 44.32 0.16 5.53 16 15 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 16 C -0.09 -3.65 6.42 31.49 0.20 -3.45 16 17 C -0.12 -3.27 7.00 31.49 0.22 -3.05 16 18 C 0.04 0.98 7.47 86.45 0.65 1.63 16 19 N -0.66 -21.08 5.71 -482.72 -2.76 -23.83 16 20 N -0.51 -29.00 7.65 -177.22 -1.36 -30.36 16 21 H 0.28 13.66 8.29 -92.70 -0.77 12.89 16 22 H 0.11 5.07 8.06 -2.91 -0.02 5.04 16 23 H 0.13 4.92 8.06 -2.91 -0.02 4.89 16 24 H 0.13 5.28 6.92 -2.91 -0.02 5.26 16 25 H 0.03 1.59 7.85 -2.39 -0.02 1.57 16 26 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 27 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.10 2.03 8.14 -2.38 -0.02 2.01 16 31 H 0.34 9.65 8.90 -89.69 -0.80 8.86 16 Total: -1.00 -64.93 261.66 1.59 -63.34 By element: Atomic # 1 Polarization: 25.71 SS G_CDS: 0.33 Total: 26.04 kcal Atomic # 6 Polarization: -38.46 SS G_CDS: 3.10 Total: -35.36 kcal Atomic # 7 Polarization: -91.41 SS G_CDS: -3.86 Total: -95.28 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 2.03 Total: 41.26 kcal Total: -64.93 1.59 -63.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238552950.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.233 kcal (2) G-P(sol) polarization free energy of solvation -64.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds