Wall clock time and date at job start Mon Mar 30 2020 02:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30735 * 1 3 3 Si 1.86796 * 120.00182 * 2 1 4 4 H 1.48508 * 109.47062 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47334 * 300.00097 * 3 2 1 6 6 H 1.48500 * 109.46933 * 60.00397 * 3 2 1 7 7 C 1.40044 * 119.99575 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99851 * 186.23755 * 7 2 1 9 9 C 1.41405 * 120.00144 * 6.23875 * 7 2 1 10 10 C 1.40654 * 119.82841 * 173.60916 * 9 7 2 11 11 C 1.38146 * 118.98036 * 179.97438 * 10 9 7 12 12 C 1.38968 * 118.58842 * 359.97438 * 11 10 9 13 13 C 1.38751 * 119.55993 * 359.97438 * 12 11 10 14 14 C 1.50701 * 119.49379 * 179.97438 * 13 12 11 15 15 H 1.08998 * 109.90524 * 3.92398 * 14 13 12 16 16 C 1.53992 * 109.91398 * 125.02609 * 14 13 12 17 17 C 1.54593 * 105.13987 * 120.57895 * 16 14 13 18 18 C 1.54937 * 102.92234 * 21.95591 * 17 16 14 19 19 N 1.47896 * 109.91741 * 242.61475 * 14 13 12 20 20 N 1.31425 * 121.01333 * 0.02922 * 13 12 11 21 21 H 0.97001 * 119.99593 * 359.97438 * 1 2 3 22 22 H 1.08000 * 120.50684 * 359.72430 * 10 9 7 23 23 H 1.07994 * 120.70296 * 180.02562 * 11 10 9 24 24 H 1.08004 * 120.21657 * 179.97438 * 12 11 10 25 25 H 1.09003 * 110.30878 * 239.49757 * 16 14 13 26 26 H 1.08998 * 110.31151 * 1.56033 * 16 14 13 27 27 H 1.09004 * 110.72208 * 140.31185 * 17 16 14 28 28 H 1.08994 * 110.72225 * 263.41598 * 17 16 14 29 29 H 1.09003 * 110.66622 * 81.02127 * 18 17 16 30 30 H 1.08995 * 110.66847 * 203.98361 * 18 17 16 31 31 H 1.00902 * 111.00357 * 335.83167 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7014 1.3462 0.0006 5 1 1.8827 2.3964 -1.2124 6 1 1.8827 2.3963 1.2126 7 6 2.0075 -1.2129 -0.0005 8 1 3.0827 -1.2157 0.1011 9 6 1.3067 -2.4338 -0.1342 10 6 2.0197 -3.6385 -0.2697 11 6 1.3174 -4.8211 -0.3985 12 6 -0.0714 -4.7742 -0.3886 13 6 -0.7141 -3.5523 -0.2503 14 6 -2.2202 -3.5030 -0.2404 15 1 -2.6249 -4.5143 -0.2815 16 6 -2.7134 -2.7920 1.0334 17 6 -3.5288 -1.5793 0.5289 18 6 -3.9145 -1.9966 -0.9125 19 7 -2.7062 -2.7143 -1.3933 20 7 -0.0294 -2.4370 -0.1290 21 1 -0.4849 0.8401 0.0004 22 1 3.0997 -3.6386 -0.2770 23 1 1.8367 -5.7622 -0.5038 24 1 -0.6467 -5.6829 -0.4879 25 1 -3.3484 -3.4585 1.6170 26 1 -1.8662 -2.4574 1.6321 27 1 -4.4199 -1.4328 1.1395 28 1 -2.9156 -0.6783 0.5216 29 1 -4.7783 -2.6614 -0.9024 30 1 -4.1136 -1.1187 -1.5269 31 1 -2.0019 -2.0648 -1.7098 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238553045.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:40 Heat of formation + Delta-G solvation = 10.225470 kcal Electronic energy + Delta-G solvation = -14703.111030 eV Core-core repulsion = 12368.949809 eV Total energy + Delta-G solvation = -2334.161221 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.55796 -38.66801 -35.49089 -32.70888 -32.16396 -30.65960 -29.21802 -27.33305 -23.86672 -23.04179 -22.17107 -20.87901 -19.41276 -17.59374 -16.61169 -16.37963 -16.30977 -15.76053 -15.13551 -14.64797 -14.43869 -14.10654 -14.01529 -13.22831 -12.94303 -12.75110 -12.65082 -12.46312 -12.23475 -12.00349 -11.87077 -11.68561 -11.37995 -11.16734 -10.08531 -9.64550 -9.44798 -9.29696 -8.28205 -6.48251 0.85641 1.16291 1.40479 1.50934 1.54085 2.22694 2.82025 3.49531 3.76304 3.97471 3.99360 4.22698 4.28045 4.37716 4.57799 4.73167 4.78198 4.86347 4.92134 5.04104 5.07124 5.12224 5.21681 5.30962 5.50984 5.53243 5.71769 5.89562 5.99445 6.18106 6.29900 6.43348 6.75708 6.99433 8.19133 8.44911 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.024098 B = 0.012668 C = 0.008893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.643859 B = 2209.779091 C = 3147.615977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.740 5.740 2 C 0.030 3.970 3 Si 0.981 3.019 4 H -0.259 1.259 5 H -0.267 1.267 6 H -0.268 1.268 7 C -0.469 4.469 8 H 0.082 0.918 9 C 0.223 3.777 10 C -0.300 4.300 11 C -0.059 4.059 12 C -0.310 4.310 13 C 0.125 3.875 14 C 0.134 3.866 15 H 0.093 0.907 16 C -0.126 4.126 17 C -0.141 4.141 18 C 0.048 3.952 19 N -0.672 5.672 20 N -0.492 5.492 21 H 0.276 0.724 22 H 0.105 0.895 23 H 0.130 0.870 24 H 0.120 0.880 25 H 0.079 0.921 26 H 0.039 0.961 27 H 0.086 0.914 28 H 0.049 0.951 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.274 -0.680 0.459 5.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.362 5.362 2 C -0.192 4.192 3 Si 0.802 3.198 4 H -0.183 1.183 5 H -0.192 1.192 6 H -0.193 1.193 7 C -0.500 4.500 8 H 0.100 0.900 9 C 0.097 3.903 10 C -0.323 4.323 11 C -0.083 4.083 12 C -0.333 4.333 13 C -0.021 4.021 14 C 0.024 3.976 15 H 0.111 0.889 16 C -0.166 4.166 17 C -0.180 4.180 18 C -0.082 4.082 19 N -0.299 5.299 20 N -0.206 5.206 21 H 0.086 0.914 22 H 0.123 0.877 23 H 0.148 0.852 24 H 0.138 0.862 25 H 0.097 0.903 26 H 0.058 0.942 27 H 0.105 0.895 28 H 0.068 0.932 29 H 0.111 0.889 30 H 0.094 0.906 31 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.217 -0.297 0.177 6.227 hybrid contribution 1.595 0.446 0.572 1.752 sum -4.622 0.149 0.748 4.685 Atomic orbital electron populations 1.70204 1.08310 1.28570 1.29114 1.26817 0.95796 1.03861 0.92741 0.85176 0.79385 0.76597 0.78653 1.18285 1.19234 1.19279 1.19899 0.94883 0.90606 1.44631 0.89966 1.19018 0.88959 0.93037 0.89254 1.21935 0.99329 0.94348 1.16692 1.21233 0.94274 0.97368 0.95469 1.21500 0.95002 0.98271 1.18572 1.21711 0.96498 0.89949 0.93928 1.21149 0.88208 0.98325 0.89938 0.88897 1.22617 0.99009 0.97456 0.97484 1.22938 0.99367 0.97593 0.98075 1.23140 0.93836 0.97672 0.93525 1.63004 1.08758 1.27051 1.31092 1.68397 1.07293 1.26868 1.17993 0.91355 0.87652 0.85221 0.86214 0.90286 0.94197 0.89536 0.93161 0.88866 0.90611 0.84861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.14 11.49 21.84 0.25 -37.89 16 2 C 0.03 1.53 5.49 85.29 0.47 1.99 16 3 Si 0.98 38.03 29.56 68.60 2.03 40.06 16 4 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 5 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 6 H -0.27 -10.01 7.11 99.48 0.71 -9.31 16 7 C -0.47 -25.46 9.14 23.49 0.21 -25.25 16 8 H 0.08 4.26 7.85 -2.91 -0.02 4.23 16 9 C 0.22 12.37 6.55 40.24 0.26 12.64 16 10 C -0.30 -15.10 9.84 22.84 0.22 -14.87 16 11 C -0.06 -2.66 10.16 22.42 0.23 -2.43 16 12 C -0.31 -13.94 9.73 22.57 0.22 -13.72 16 13 C 0.12 5.97 5.41 42.74 0.23 6.20 16 14 C 0.13 5.34 3.71 44.31 0.16 5.50 16 15 H 0.09 3.36 7.89 -2.39 -0.02 3.34 16 16 C -0.13 -4.69 6.45 31.47 0.20 -4.48 16 17 C -0.14 -4.65 7.06 31.80 0.22 -4.42 16 18 C 0.05 1.47 7.55 86.65 0.65 2.12 16 19 N -0.67 -25.95 7.39 -484.04 -3.58 -29.53 16 20 N -0.49 -26.40 6.92 -177.22 -1.23 -27.63 16 21 H 0.28 12.91 8.29 -92.71 -0.77 12.14 16 22 H 0.11 4.93 8.06 -2.91 -0.02 4.91 16 23 H 0.13 4.78 8.06 -2.91 -0.02 4.76 16 24 H 0.12 4.65 7.95 -2.91 -0.02 4.62 16 25 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 26 H 0.04 1.78 7.40 -2.39 -0.02 1.77 16 27 H 0.09 2.31 8.14 -2.38 -0.02 2.29 16 28 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.34 15.08 8.11 -89.69 -0.73 14.35 16 Total: -1.00 -59.10 262.09 0.97 -58.14 By element: Atomic # 1 Polarization: 33.18 SS G_CDS: 0.40 Total: 33.57 kcal Atomic # 6 Polarization: -39.81 SS G_CDS: 3.10 Total: -36.72 kcal Atomic # 7 Polarization: -90.50 SS G_CDS: -4.55 Total: -95.05 kcal Atomic # 14 Polarization: 38.03 SS G_CDS: 2.03 Total: 40.06 kcal Total: -59.10 0.97 -58.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238553045.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.361 kcal (2) G-P(sol) polarization free energy of solvation -59.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds