Wall clock time and date at job start Mon Mar 30 2020 02:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86797 * 120.00423 * 2 1 4 4 H 1.48503 * 109.47237 * 85.56563 * 3 2 1 5 5 H 1.48500 * 109.47287 * 205.57064 * 3 2 1 6 6 H 1.48505 * 109.47156 * 325.56697 * 3 2 1 7 7 C 1.39955 * 119.99878 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00033 * 162.85606 * 7 2 1 9 9 C 1.41407 * 119.99796 * 342.84919 * 7 2 1 10 10 C 1.41111 * 120.66024 * 155.51098 * 9 7 2 11 11 C 1.38009 * 118.19937 * 180.02562 * 10 9 7 12 12 C 1.38627 * 119.42421 * 0.02562 * 11 10 9 13 13 C 1.50695 * 119.34349 * 179.97438 * 12 11 10 14 14 H 1.09007 * 109.47071 * 245.00177 * 13 12 11 15 15 N 1.46903 * 109.47087 * 4.99912 * 13 12 11 16 16 C 1.53001 * 109.47316 * 125.00046 * 13 12 11 17 17 C 1.52999 * 117.49883 * 248.74574 * 16 13 12 18 18 C 1.52999 * 117.49515 * 180.08767 * 16 13 12 19 19 N 1.32062 * 121.31632 * 0.02562 * 12 11 10 20 20 C 1.31498 * 121.98064 * 359.69538 * 19 12 11 21 21 H 0.97000 * 119.99745 * 0.02562 * 1 2 3 22 22 H 1.08003 * 120.90085 * 0.02779 * 10 9 7 23 23 H 1.07997 * 120.29357 * 180.02562 * 11 10 9 24 24 H 1.00898 * 111.00074 * 296.04492 * 15 13 12 25 25 H 1.00895 * 110.99803 * 60.00003 * 15 13 12 26 26 H 1.09000 * 115.54974 * 34.42124 * 16 13 12 27 27 H 1.09004 * 117.49684 * 359.97438 * 17 16 13 28 28 H 1.08991 * 117.50108 * 145.02082 * 17 16 13 29 29 H 1.09005 * 117.49264 * 214.97618 * 18 16 13 30 30 H 1.08995 * 117.50629 * 359.97007 * 18 16 13 31 31 H 1.08000 * 119.80058 * 180.31820 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 2.3961 2.1005 1.3959 5 1 3.5835 1.4148 -0.6043 6 1 1.4898 2.6238 -0.7917 7 6 2.0079 -1.2121 0.0005 8 1 3.0519 -1.2330 -0.2752 9 6 1.3480 -2.4093 0.3622 10 6 1.8190 -3.6576 -0.0971 11 6 1.1358 -4.7937 0.2865 12 6 0.0206 -4.6752 1.1013 13 6 -0.7244 -5.9169 1.5186 14 1 -1.7270 -5.9001 1.0910 15 7 -0.0062 -7.1042 1.0363 16 6 -0.8217 -5.9646 3.0448 17 6 -0.0225 -7.0491 3.7700 18 6 -1.5459 -7.1589 3.6694 19 7 -0.4027 -3.4958 1.5183 20 6 0.2104 -2.3798 1.1899 21 1 -0.4850 0.8401 -0.0004 22 1 2.6906 -3.7222 -0.7317 23 1 1.4671 -5.7667 -0.0451 24 1 0.0152 -7.1290 0.0279 25 1 0.9266 -7.1426 1.4189 26 1 -0.9240 -4.9989 3.5398 27 1 0.5723 -7.7289 3.1598 28 1 0.4008 -6.7971 4.7422 29 1 -2.1243 -6.9788 4.5757 30 1 -1.9535 -7.9103 2.9932 31 1 -0.1632 -1.4346 1.5551 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238574845.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:49 Heat of formation + Delta-G solvation = 46.076728 kcal Electronic energy + Delta-G solvation = -14142.555884 eV Core-core repulsion = 11809.949291 eV Total energy + Delta-G solvation = -2332.606594 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.91310 -37.12197 -34.21195 -32.83403 -31.09798 -29.13862 -26.64886 -24.27641 -21.98311 -21.76490 -21.00482 -19.15017 -17.51485 -16.29672 -15.71486 -15.29475 -14.61584 -14.08766 -13.80021 -13.56700 -12.83380 -12.73173 -11.93945 -11.75122 -11.49980 -11.32978 -11.04750 -10.90788 -10.80949 -10.75454 -10.12740 -9.91160 -9.49857 -9.40928 -8.53295 -8.36450 -7.84490 -7.51456 -6.95827 -4.53340 2.57884 2.83532 2.99323 3.03091 3.10981 3.81055 4.28135 4.51623 5.02932 5.19801 5.42435 5.47107 5.60816 5.79897 5.98918 6.01218 6.11717 6.25506 6.29221 6.56395 6.57544 6.73668 6.75280 6.93126 7.02122 7.23429 7.48351 7.50541 7.77462 7.79634 8.01795 8.26142 8.63902 8.66609 9.68968 10.01150 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.056945 B = 0.006711 C = 0.006390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.581191 B = 4171.240766 C = 4381.103067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.074 3.926 3 Si 0.914 3.086 4 H -0.266 1.266 5 H -0.261 1.261 6 H -0.276 1.276 7 C -0.451 4.451 8 H 0.081 0.919 9 C 0.061 3.939 10 C -0.198 4.198 11 C -0.143 4.143 12 C -0.046 4.046 13 C 0.191 3.809 14 H 0.079 0.921 15 N -0.840 5.840 16 C -0.127 4.127 17 C -0.180 4.180 18 C -0.178 4.178 19 N -0.466 5.466 20 C 0.048 3.952 21 H 0.286 0.714 22 H 0.100 0.900 23 H 0.095 0.905 24 H 0.338 0.662 25 H 0.338 0.662 26 H 0.109 0.891 27 H 0.099 0.901 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.652 -5.710 2.554 6.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.145 4.145 3 Si 0.738 3.262 4 H -0.191 1.191 5 H -0.185 1.185 6 H -0.201 1.201 7 C -0.481 4.481 8 H 0.099 0.901 9 C 0.057 3.943 10 C -0.223 4.223 11 C -0.164 4.164 12 C -0.182 4.182 13 C 0.079 3.921 14 H 0.097 0.903 15 N -0.370 5.370 16 C -0.146 4.146 17 C -0.217 4.217 18 C -0.215 4.215 19 N -0.174 5.174 20 C -0.117 4.117 21 H 0.097 0.903 22 H 0.119 0.881 23 H 0.113 0.887 24 H 0.151 0.849 25 H 0.152 0.848 26 H 0.127 0.873 27 H 0.117 0.883 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.112 0.888 31 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -0.869 -6.006 3.422 6.966 hybrid contribution 1.849 1.555 -1.145 2.673 sum 0.980 -4.451 2.277 5.094 Atomic orbital electron populations 1.69766 1.07660 1.29863 1.33996 1.25991 0.94820 1.01656 0.92023 0.86191 0.80465 0.80131 0.79368 1.19092 1.18488 1.20080 1.19566 0.97937 0.90885 1.39725 0.90104 1.18560 0.92991 0.92726 0.90032 1.21267 1.02897 0.92880 1.05287 1.21197 0.97348 0.97455 1.00354 1.21055 0.98451 0.93642 1.05090 1.19285 0.96142 0.84522 0.92124 0.90312 1.59254 1.22953 1.41264 1.13498 1.22344 1.04013 0.93968 0.94227 1.22853 0.94295 1.03418 1.01175 1.22843 0.94502 1.01876 1.02245 1.66901 1.30484 0.98259 1.21757 1.22996 0.95876 0.94775 0.98081 0.90340 0.88149 0.88738 0.84914 0.84798 0.87288 0.88280 0.90121 0.89988 0.88820 0.83280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.84 10.96 55.55 0.61 -19.23 16 2 C 0.07 1.80 5.16 -17.34 -0.09 1.71 16 3 Si 0.91 17.98 29.59 -169.99 -5.03 12.95 16 4 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 5 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 6 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 7 C -0.45 -11.61 9.08 -37.73 -0.34 -11.95 16 8 H 0.08 1.99 7.90 -52.49 -0.41 1.57 16 9 C 0.06 1.62 5.58 -106.67 -0.60 1.02 16 10 C -0.20 -4.76 9.94 -38.58 -0.38 -5.14 16 11 C -0.14 -3.12 9.04 -39.52 -0.36 -3.48 16 12 C -0.05 -1.03 6.18 -82.35 -0.51 -1.54 16 13 C 0.19 3.52 3.58 -68.86 -0.25 3.27 16 14 H 0.08 1.51 8.14 -51.92 -0.42 1.08 16 15 N -0.84 -12.79 7.55 -5.65 -0.04 -12.83 16 16 C -0.13 -2.19 5.63 -90.62 -0.51 -2.70 16 17 C -0.18 -2.67 9.70 -26.69 -0.26 -2.93 16 18 C -0.18 -2.58 10.17 -26.69 -0.27 -2.85 16 19 N -0.47 -11.68 9.69 -8.78 -0.09 -11.77 16 20 C 0.05 1.27 9.89 -16.76 -0.17 1.10 16 21 H 0.29 6.50 8.30 -40.82 -0.34 6.16 16 22 H 0.10 2.23 8.06 -52.48 -0.42 1.81 16 23 H 0.09 1.73 6.16 -52.49 -0.32 1.40 16 24 H 0.34 4.87 8.08 -39.29 -0.32 4.55 16 25 H 0.34 5.01 6.76 -39.29 -0.27 4.74 16 26 H 0.11 2.11 7.72 -51.93 -0.40 1.71 16 27 H 0.10 1.41 6.26 -51.93 -0.33 1.08 16 28 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 29 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 31 H 0.15 4.06 6.17 -52.49 -0.32 3.73 16 LS Contribution 261.06 15.07 3.93 3.93 Total: -1.00 -26.70 261.06 -7.97 -34.66 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: -3.62 Total: 15.78 kcal Atomic # 6 Polarization: -19.76 SS G_CDS: -3.73 Total: -23.49 kcal Atomic # 7 Polarization: -44.31 SS G_CDS: 0.48 Total: -43.83 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -5.03 Total: 12.95 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -26.70 -7.97 -34.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238574845.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.737 kcal (2) G-P(sol) polarization free energy of solvation -26.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds