Wall clock time and date at job start Mon Mar 30 2020 02:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30686 * 1 3 3 Si 1.86801 * 120.00135 * 2 1 4 4 H 1.48503 * 109.47357 * 270.00135 * 3 2 1 5 5 H 1.48499 * 109.46701 * 30.00134 * 3 2 1 6 6 H 1.48501 * 109.47293 * 149.99794 * 3 2 1 7 7 C 1.40065 * 120.00459 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00744 * 180.02562 * 7 2 1 9 9 C 1.41599 * 119.99464 * 359.97438 * 7 2 1 10 10 N 1.33468 * 119.28862 * 0.02562 * 9 7 2 11 11 C 1.31879 * 120.69261 * 179.97438 * 10 9 7 12 12 C 1.39104 * 119.25557 * 359.97438 * 11 10 9 13 13 C 1.39057 * 118.67108 * 0.02562 * 12 11 10 14 14 C 1.50701 * 120.36614 * 179.97438 * 13 12 11 15 15 C 1.53874 * 110.03211 * 36.31572 * 14 13 12 16 16 C 1.54269 * 106.59763 * 240.71234 * 15 14 13 17 17 C 1.54890 * 104.19342 * 336.38878 * 16 15 14 18 18 C 1.54266 * 110.03605 * 279.14613 * 14 13 12 19 19 N 1.31910 * 119.26285 * 0.25580 * 13 12 11 20 20 H 0.96996 * 120.00031 * 359.97438 * 1 2 3 21 21 H 1.07993 * 120.37458 * 180.02562 * 11 10 9 22 22 H 1.07993 * 120.66315 * 180.02562 * 12 11 10 23 23 H 1.09009 * 110.05492 * 157.72672 * 14 13 12 24 24 H 1.09006 * 110.03217 * 359.97438 * 15 14 13 25 25 H 1.09000 * 110.03714 * 121.42662 * 15 14 13 26 26 H 1.09000 * 110.48492 * 95.06505 * 16 15 14 27 27 H 1.09000 * 110.48618 * 217.70824 * 16 15 14 28 28 H 1.09000 * 110.75227 * 279.62363 * 17 16 15 29 29 H 1.08997 * 110.90922 * 156.33153 * 17 16 15 30 30 H 1.08998 * 110.48712 * 261.57612 * 18 14 13 31 31 H 1.08996 * 110.48777 * 24.08361 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 2.4884 2.0465 -1.4001 5 1 1.4383 2.6526 0.7001 6 1 3.5385 1.4402 0.7001 7 6 2.0073 -1.2129 -0.0005 8 1 3.0873 -1.2130 -0.0001 9 6 1.2993 -2.4392 -0.0005 10 7 -0.0353 -2.4226 -0.0005 11 6 -0.7225 -3.5482 -0.0010 12 6 -0.0409 -4.7608 -0.0021 13 6 1.3496 -4.7446 -0.0021 14 6 2.1265 -6.0359 -0.0027 15 6 1.4002 -7.0877 -0.8593 16 6 1.0592 -8.2625 0.0807 17 6 2.0897 -8.1403 1.2305 18 6 2.2016 -6.6082 1.4279 19 7 1.9809 -3.5864 0.0041 20 1 -0.4850 0.8400 0.0004 21 1 -1.8022 -3.5288 -0.0015 22 1 -0.5808 -5.6961 -0.0030 23 1 3.1312 -5.8675 -0.3907 24 1 0.4854 -6.6643 -1.2743 25 1 2.0522 -7.4298 -1.6630 26 1 0.0444 -8.1609 0.4655 27 1 1.1779 -9.2134 -0.4387 28 1 3.0500 -8.5630 0.9350 29 1 1.7204 -8.6206 2.1365 30 1 3.1540 -6.3519 1.8919 31 1 1.3727 -6.2377 2.0310 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259061471.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:10 Heat of formation + Delta-G solvation = 24.158037 kcal Electronic energy + Delta-G solvation = -14269.345453 eV Core-core repulsion = 11935.788394 eV Total energy + Delta-G solvation = -2333.557059 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.25895 -37.34363 -33.70348 -31.93815 -30.60931 -28.39161 -27.74114 -26.13276 -22.28053 -21.85753 -20.37756 -19.43965 -17.23994 -16.13049 -15.63686 -14.88639 -14.60838 -13.93528 -13.74695 -13.12407 -12.78818 -12.68438 -12.07659 -11.55053 -11.31003 -10.98930 -10.86307 -10.79170 -10.75435 -10.62218 -10.39222 -10.25308 -10.09619 -9.38138 -8.91745 -8.88079 -7.85167 -7.25998 -6.48609 -4.67301 2.66007 2.95973 3.07630 3.11601 3.15897 3.91676 4.67257 4.94283 4.99005 5.02912 5.49856 5.73446 5.82253 5.89511 5.90093 5.96894 6.02519 6.09188 6.17943 6.26092 6.28270 6.47850 6.54193 6.58707 6.65539 6.83875 6.94277 7.13149 7.38384 7.73731 8.22785 8.57665 8.65885 9.18916 10.18752 10.35277 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.058818 B = 0.007028 C = 0.006565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.928346 B = 3983.282543 C = 4263.901205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.714 5.714 2 C 0.067 3.933 3 Si 0.917 3.083 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.404 4.404 8 H 0.091 0.909 9 C 0.393 3.607 10 N -0.511 5.511 11 C 0.152 3.848 12 C -0.370 4.370 13 C 0.195 3.805 14 C -0.038 4.038 15 C -0.120 4.120 16 C -0.122 4.122 17 C -0.124 4.124 18 C -0.108 4.108 19 N -0.593 5.593 20 H 0.274 0.726 21 H 0.126 0.874 22 H 0.104 0.896 23 H 0.079 0.921 24 H 0.075 0.925 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.052 -8.841 0.620 8.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.336 5.336 2 C -0.160 4.160 3 Si 0.741 3.259 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.440 4.440 8 H 0.109 0.891 9 C 0.155 3.845 10 N -0.229 5.229 11 C -0.022 4.022 12 C -0.398 4.398 13 C 0.042 3.958 14 C -0.057 4.057 15 C -0.158 4.158 16 C -0.159 4.159 17 C -0.161 4.161 18 C -0.147 4.147 19 N -0.313 5.313 20 H 0.085 0.915 21 H 0.144 0.856 22 H 0.122 0.878 23 H 0.097 0.903 24 H 0.093 0.907 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.391 -7.709 0.623 7.858 hybrid contribution -0.304 -0.103 -0.018 0.321 sum 1.087 -7.812 0.605 7.910 Atomic orbital electron populations 1.70144 1.07278 1.27992 1.28219 1.26096 0.94998 1.01320 0.93547 0.86169 0.80371 0.80046 0.79316 1.19281 1.20042 1.18355 1.19339 0.94626 0.87644 1.42359 0.89090 1.19974 0.85841 0.90597 0.88050 1.69356 1.08422 1.26851 1.18246 1.22874 0.99115 0.89029 0.91201 1.21765 0.95625 0.98670 1.23692 1.20953 0.90808 0.93024 0.91020 1.20553 0.98625 0.91028 0.95496 1.22293 1.00929 0.94948 0.97610 1.22343 0.99204 0.97826 0.96554 1.22497 0.99016 0.96430 0.98174 1.22324 1.01891 0.94212 0.96246 1.68478 1.41097 0.98088 1.23623 0.91482 0.85641 0.87786 0.90295 0.90658 0.92248 0.91744 0.92228 0.91804 0.91993 0.91811 0.91479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -19.26 11.43 55.55 0.63 -18.63 16 2 C 0.07 1.73 5.50 -17.35 -0.10 1.64 16 3 Si 0.92 18.91 29.56 -169.99 -5.02 13.89 16 4 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 5 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 6 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 7 C -0.40 -11.40 9.38 -37.62 -0.35 -11.76 16 8 H 0.09 2.47 7.85 -52.49 -0.41 2.06 16 9 C 0.39 11.44 7.37 -158.30 -1.17 10.27 16 10 N -0.51 -14.58 7.88 -12.64 -0.10 -14.68 16 11 C 0.15 3.74 11.31 -17.21 -0.19 3.54 16 12 C -0.37 -8.35 8.82 -38.96 -0.34 -8.70 16 13 C 0.19 4.55 5.67 -82.25 -0.47 4.08 16 14 C -0.04 -0.69 3.30 -90.65 -0.30 -0.99 16 15 C -0.12 -1.83 6.01 -25.61 -0.15 -1.98 16 16 C -0.12 -1.55 6.83 -25.07 -0.17 -1.72 16 17 C -0.12 -1.56 6.91 -24.74 -0.17 -1.73 16 18 C -0.11 -1.74 6.35 -25.08 -0.16 -1.90 16 19 N -0.59 -16.14 10.29 -8.88 -0.09 -16.23 16 20 H 0.27 6.63 8.29 -40.82 -0.34 6.29 16 21 H 0.13 2.68 8.06 -52.49 -0.42 2.26 16 22 H 0.10 2.03 6.89 -52.49 -0.36 1.67 16 23 H 0.08 1.48 8.14 -51.92 -0.42 1.06 16 24 H 0.07 1.24 6.04 -51.93 -0.31 0.92 16 25 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.07 1.17 7.85 -51.93 -0.41 0.76 16 LS Contribution 259.88 15.07 3.92 3.92 Total: -1.00 -30.51 259.88 -8.25 -38.76 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -4.01 Total: 2.20 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: -3.57 Total: -9.24 kcal Atomic # 7 Polarization: -49.98 SS G_CDS: 0.44 Total: -49.54 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.02 Total: 13.89 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -30.51 -8.25 -38.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259061471.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.922 kcal (2) G-P(sol) polarization free energy of solvation -30.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds