Wall clock time and date at job start Mon Mar 30 2020 02:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30686 * 1 3 3 Si 1.86801 * 120.00135 * 2 1 4 4 H 1.48503 * 109.47357 * 270.00135 * 3 2 1 5 5 H 1.48499 * 109.46701 * 30.00134 * 3 2 1 6 6 H 1.48501 * 109.47293 * 149.99794 * 3 2 1 7 7 C 1.40065 * 120.00459 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00744 * 180.02562 * 7 2 1 9 9 C 1.41599 * 119.99464 * 359.97438 * 7 2 1 10 10 N 1.33468 * 119.28862 * 0.02562 * 9 7 2 11 11 C 1.31879 * 120.69261 * 179.97438 * 10 9 7 12 12 C 1.39104 * 119.25557 * 359.97438 * 11 10 9 13 13 C 1.39057 * 118.67108 * 0.02562 * 12 11 10 14 14 C 1.50701 * 120.36614 * 179.97438 * 13 12 11 15 15 C 1.53874 * 110.03211 * 36.31572 * 14 13 12 16 16 C 1.54269 * 106.59763 * 240.71234 * 15 14 13 17 17 C 1.54890 * 104.19342 * 336.38878 * 16 15 14 18 18 C 1.54266 * 110.03605 * 279.14613 * 14 13 12 19 19 N 1.31910 * 119.26285 * 0.25580 * 13 12 11 20 20 H 0.96996 * 120.00031 * 359.97438 * 1 2 3 21 21 H 1.07993 * 120.37458 * 180.02562 * 11 10 9 22 22 H 1.07993 * 120.66315 * 180.02562 * 12 11 10 23 23 H 1.09009 * 110.05492 * 157.72672 * 14 13 12 24 24 H 1.09006 * 110.03217 * 359.97438 * 15 14 13 25 25 H 1.09000 * 110.03714 * 121.42662 * 15 14 13 26 26 H 1.09000 * 110.48492 * 95.06505 * 16 15 14 27 27 H 1.09000 * 110.48618 * 217.70824 * 16 15 14 28 28 H 1.09000 * 110.75227 * 279.62363 * 17 16 15 29 29 H 1.08997 * 110.90922 * 156.33153 * 17 16 15 30 30 H 1.08998 * 110.48712 * 261.57612 * 18 14 13 31 31 H 1.08996 * 110.48777 * 24.08361 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 2.4884 2.0465 -1.4001 5 1 1.4383 2.6526 0.7001 6 1 3.5385 1.4402 0.7001 7 6 2.0073 -1.2129 -0.0005 8 1 3.0873 -1.2130 -0.0001 9 6 1.2993 -2.4392 -0.0005 10 7 -0.0353 -2.4226 -0.0005 11 6 -0.7225 -3.5482 -0.0010 12 6 -0.0409 -4.7608 -0.0021 13 6 1.3496 -4.7446 -0.0021 14 6 2.1265 -6.0359 -0.0027 15 6 1.4002 -7.0877 -0.8593 16 6 1.0592 -8.2625 0.0807 17 6 2.0897 -8.1403 1.2305 18 6 2.2016 -6.6082 1.4279 19 7 1.9809 -3.5864 0.0041 20 1 -0.4850 0.8400 0.0004 21 1 -1.8022 -3.5288 -0.0015 22 1 -0.5808 -5.6961 -0.0030 23 1 3.1312 -5.8675 -0.3907 24 1 0.4854 -6.6643 -1.2743 25 1 2.0522 -7.4298 -1.6630 26 1 0.0444 -8.1609 0.4655 27 1 1.1779 -9.2134 -0.4387 28 1 3.0500 -8.5630 0.9350 29 1 1.7204 -8.6206 2.1365 30 1 3.1540 -6.3519 1.8919 31 1 1.3727 -6.2377 2.0310 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259061471.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:10 Heat of formation + Delta-G solvation = 6.077193 kcal Electronic energy + Delta-G solvation = -14270.129497 eV Core-core repulsion = 11935.788394 eV Total energy + Delta-G solvation = -2334.341104 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.08394 -38.76957 -35.63124 -33.83073 -32.45388 -29.59744 -29.26108 -28.09338 -24.02334 -23.81886 -21.46141 -20.98585 -19.10320 -17.96375 -17.30540 -16.44163 -16.08797 -15.52203 -15.38095 -14.93611 -14.43520 -14.09552 -13.74952 -13.30302 -12.94869 -12.67174 -12.43173 -12.19731 -11.91915 -11.89648 -11.86628 -11.58911 -11.41899 -11.22688 -10.85739 -10.83264 -9.77992 -9.26313 -8.43042 -6.75024 0.74355 1.04073 1.38329 1.50063 1.54991 2.19662 2.74564 3.57462 3.72062 3.76038 4.03406 4.09751 4.23914 4.41926 4.57540 4.61530 4.71025 4.77064 4.88463 4.90449 5.00913 5.05592 5.14224 5.19308 5.25838 5.34443 5.38488 5.53488 5.57652 5.85064 6.15752 6.55990 6.65051 7.22859 8.24192 8.38376 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.058818 B = 0.007028 C = 0.006565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.928346 B = 3983.282543 C = 4263.901205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.750 5.750 2 C 0.023 3.977 3 Si 1.001 2.999 4 H -0.259 1.259 5 H -0.260 1.260 6 H -0.257 1.257 7 C -0.445 4.445 8 H 0.086 0.914 9 C 0.363 3.637 10 N -0.548 5.548 11 C 0.133 3.867 12 C -0.358 4.358 13 C 0.184 3.816 14 C -0.041 4.041 15 C -0.116 4.116 16 C -0.115 4.115 17 C -0.113 4.113 18 C -0.108 4.108 19 N -0.624 5.624 20 H 0.284 0.716 21 H 0.155 0.845 22 H 0.140 0.860 23 H 0.069 0.931 24 H 0.062 0.938 25 H 0.074 0.926 26 H 0.066 0.934 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.061 0.939 31 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.122 -10.209 0.671 10.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.373 5.373 2 C -0.199 4.199 3 Si 0.819 3.181 4 H -0.183 1.183 5 H -0.185 1.185 6 H -0.181 1.181 7 C -0.480 4.480 8 H 0.104 0.896 9 C 0.124 3.876 10 N -0.266 5.266 11 C -0.039 4.039 12 C -0.384 4.384 13 C 0.032 3.968 14 C -0.060 4.060 15 C -0.154 4.154 16 C -0.153 4.153 17 C -0.150 4.150 18 C -0.147 4.147 19 N -0.344 5.344 20 H 0.095 0.905 21 H 0.172 0.828 22 H 0.157 0.843 23 H 0.087 0.913 24 H 0.081 0.919 25 H 0.093 0.907 26 H 0.084 0.916 27 H 0.106 0.894 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.079 0.921 31 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.432 -9.132 0.675 9.268 hybrid contribution -0.370 0.182 -0.039 0.414 sum 1.062 -8.950 0.636 9.035 Atomic orbital electron populations 1.70208 1.08943 1.29655 1.28450 1.27079 0.95923 1.04661 0.92286 0.84951 0.78746 0.74642 0.79742 1.18335 1.18451 1.18097 1.19669 0.94704 0.88998 1.44618 0.89614 1.20395 0.86630 0.91679 0.88854 1.69318 1.08453 1.28740 1.20122 1.23475 1.00593 0.89134 0.90700 1.22109 0.95579 0.99403 1.21333 1.21859 0.91997 0.93801 0.89141 1.20733 0.97801 0.89612 0.97878 1.22283 1.00179 0.94902 0.98080 1.22343 0.99225 0.97746 0.95956 1.22477 1.00071 0.93300 0.99147 1.22316 1.01066 0.97063 0.94216 1.68547 1.41829 0.98945 1.25123 0.90534 0.82805 0.84259 0.91286 0.91946 0.90721 0.91551 0.89430 0.90193 0.90061 0.92056 0.93232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -41.37 11.43 21.84 0.25 -41.12 16 2 C 0.02 1.24 5.50 85.31 0.47 1.71 16 3 Si 1.00 39.21 29.56 68.60 2.03 41.24 16 4 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 5 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 6 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 7 C -0.44 -26.11 9.38 23.54 0.22 -25.89 16 8 H 0.09 4.88 7.85 -2.91 -0.02 4.86 16 9 C 0.36 21.99 7.37 135.16 1.00 22.99 16 10 N -0.55 -32.22 7.88 -193.90 -1.53 -33.74 16 11 C 0.13 6.59 11.31 84.89 0.96 7.55 16 12 C -0.36 -15.97 8.82 22.67 0.20 -15.77 16 13 C 0.18 8.64 5.67 42.74 0.24 8.89 16 14 C -0.04 -1.46 3.30 -10.82 -0.04 -1.50 16 15 C -0.12 -3.26 6.01 31.32 0.19 -3.08 16 16 C -0.12 -2.47 6.83 31.67 0.22 -2.25 16 17 C -0.11 -2.43 6.91 31.88 0.22 -2.21 16 18 C -0.11 -3.32 6.35 31.67 0.20 -3.12 16 19 N -0.62 -35.13 10.29 -182.00 -1.87 -37.00 16 20 H 0.28 13.90 8.29 -92.71 -0.77 13.13 16 21 H 0.15 6.49 8.06 -2.91 -0.02 6.47 16 22 H 0.14 5.12 6.89 -2.91 -0.02 5.10 16 23 H 0.07 2.58 8.14 -2.38 -0.02 2.56 16 24 H 0.06 1.91 6.04 -2.38 -0.01 1.89 16 25 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.05 1.68 7.85 -2.39 -0.02 1.66 16 Total: -1.00 -68.90 259.88 3.87 -65.03 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: 1.12 Total: 18.26 kcal Atomic # 6 Polarization: -16.54 SS G_CDS: 3.88 Total: -12.66 kcal Atomic # 7 Polarization: -108.72 SS G_CDS: -3.15 Total: -111.87 kcal Atomic # 14 Polarization: 39.21 SS G_CDS: 2.03 Total: 41.24 kcal Total: -68.90 3.87 -65.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259061471.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.110 kcal (2) G-P(sol) polarization free energy of solvation -68.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds