Wall clock time and date at job start Mon Mar 30 2020 03:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39099 * 120.37150 * 2 1 4 4 C 1.39052 * 118.67501 * 180.26001 * 3 2 1 5 5 C 1.50696 * 120.37377 * 179.72631 * 4 3 2 6 6 C 1.53780 * 113.61260 * 61.73566 * 5 4 3 7 7 C 1.53959 * 87.01984 * 220.04737 * 6 5 4 8 8 C 1.53779 * 113.61260 * 324.13039 * 5 4 3 9 9 N 1.31914 * 119.25725 * 359.43523 * 4 3 2 10 10 C 1.33437 * 120.68688 * 0.57896 * 9 4 3 11 11 C 1.41594 * 119.28322 * 179.72244 * 10 9 4 12 12 H 1.08001 * 120.00191 * 353.63657 * 11 10 9 13 13 C 1.40069 * 120.00046 * 173.63234 * 11 10 9 14 14 N 1.30685 * 120.00262 * 6.31813 * 13 11 10 15 15 Si 1.86806 * 119.99877 * 186.31312 * 13 11 10 16 16 H 1.48498 * 109.46785 * 84.99242 * 15 13 11 17 17 H 1.48498 * 109.46956 * 204.99152 * 15 13 11 18 18 H 1.48499 * 109.47135 * 324.99005 * 15 13 11 19 19 N 1.31877 * 120.36981 * 179.97438 * 2 1 3 20 20 H 1.08999 * 109.47573 * 89.99703 * 1 2 3 21 21 H 1.08994 * 109.47250 * 210.00210 * 1 2 3 22 22 H 1.09011 * 109.46778 * 329.99690 * 1 2 3 23 23 H 1.08007 * 120.66113 * 359.97438 * 3 2 1 24 24 H 1.08995 * 112.85476 * 192.93324 * 5 4 3 25 25 H 1.09001 * 113.62061 * 334.56833 * 6 5 4 26 26 H 1.09005 * 113.61480 * 105.47756 * 6 5 4 27 27 H 1.08997 * 113.53957 * 270.81010 * 7 6 5 28 28 H 1.09008 * 113.74247 * 139.94187 * 7 6 5 29 29 H 1.09003 * 113.61677 * 254.52717 * 8 5 4 30 30 H 1.09001 * 113.61564 * 25.43302 * 8 5 4 31 31 H 0.96998 * 120.00400 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2103 1.2001 0.0000 4 6 3.6002 1.1589 -0.0055 5 6 4.4003 2.4359 -0.0119 6 6 4.1670 3.3153 1.2279 7 6 4.1989 4.5253 0.2765 8 6 3.7564 3.5621 -0.8378 9 7 4.2106 -0.0105 0.0007 10 6 3.5084 -1.1452 0.0007 11 6 4.1942 -2.3840 0.0015 12 1 5.2690 -2.4063 -0.1015 13 6 3.4785 -3.5805 0.1360 14 7 2.1718 -3.5639 0.1365 15 14 4.3921 -5.2002 0.3145 16 1 4.7433 -5.4157 1.7411 17 1 3.5261 -6.3112 -0.1554 18 1 5.6329 -5.1610 -0.5005 19 7 2.1738 -1.1378 0.0005 20 1 -0.3634 0.0001 -1.0276 21 1 -0.3633 -0.8899 0.5138 22 1 -0.3633 0.8901 0.5139 23 1 1.6872 2.1450 -0.0004 24 1 5.4537 2.2744 -0.2406 25 1 3.1973 3.1564 1.6998 26 1 4.9931 3.2958 1.9388 27 1 5.1976 4.9358 0.1277 28 1 3.4582 5.2892 0.5129 29 1 4.2515 3.7416 -1.7921 30 1 2.6743 3.4708 -0.9317 31 1 1.6762 -4.3924 0.2300 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259173514.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:57 Heat of formation + Delta-G solvation = 50.775549 kcal Electronic energy + Delta-G solvation = -14288.824538 eV Core-core repulsion = 11956.421700 eV Total energy + Delta-G solvation = -2332.402838 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.43464 -37.72325 -33.74847 -32.66889 -30.57250 -27.43318 -26.31321 -25.34680 -25.10373 -21.71978 -20.34624 -18.90538 -17.34546 -15.98259 -15.32539 -14.73934 -14.63745 -13.66581 -13.47785 -13.31320 -12.39363 -12.27788 -12.05406 -11.84870 -11.62233 -11.42760 -11.23411 -11.13963 -10.63261 -10.44753 -10.16808 -10.10247 -9.95897 -9.31528 -8.89506 -8.61279 -7.80892 -7.26187 -6.48088 -4.65840 2.65547 2.92354 3.07891 3.12295 3.15288 3.92585 4.65320 4.99350 5.02660 5.07629 5.38661 5.66945 5.73418 5.91335 5.94039 5.99435 6.11884 6.14253 6.17579 6.28756 6.44577 6.44965 6.53040 6.63121 6.68575 6.93527 7.03287 7.14758 7.40205 7.75807 8.24451 8.60073 8.67537 9.21616 10.20061 10.37269 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.039631 B = 0.008194 C = 0.007033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.346596 B = 3416.190389 C = 3980.454817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.174 3.826 3 C -0.364 4.364 4 C 0.197 3.803 5 C -0.056 4.056 6 C -0.126 4.126 7 C -0.141 4.141 8 C -0.130 4.130 9 N -0.595 5.595 10 C 0.397 3.603 11 C -0.406 4.406 12 H 0.091 0.909 13 C 0.068 3.932 14 N -0.714 5.714 15 Si 0.917 3.083 16 H -0.267 1.267 17 H -0.276 1.276 18 H -0.260 1.260 19 N -0.508 5.508 20 H 0.062 0.938 21 H 0.069 0.931 22 H 0.056 0.944 23 H 0.103 0.897 24 H 0.095 0.905 25 H 0.082 0.918 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.397 7.524 0.331 7.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.020 3.980 3 C -0.392 4.392 4 C 0.045 3.955 5 C -0.076 4.076 6 C -0.164 4.164 7 C -0.179 4.179 8 C -0.168 4.168 9 N -0.315 5.315 10 C 0.159 3.841 11 C -0.441 4.441 12 H 0.109 0.891 13 C -0.158 4.158 14 N -0.336 5.336 15 Si 0.741 3.259 16 H -0.192 1.192 17 H -0.201 1.201 18 H -0.184 1.184 19 N -0.227 5.227 20 H 0.081 0.919 21 H 0.088 0.912 22 H 0.075 0.925 23 H 0.121 0.879 24 H 0.114 0.886 25 H 0.100 0.900 26 H 0.082 0.918 27 H 0.095 0.905 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.105 0.895 31 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.084 6.397 0.339 6.407 hybrid contribution -0.158 0.095 0.087 0.204 sum -0.242 6.492 0.426 6.511 Atomic orbital electron populations 1.20508 0.91201 1.01617 1.01441 1.21467 0.95982 0.89661 0.90901 1.21547 0.95235 0.98070 1.24312 1.20833 0.90746 0.92853 0.91106 1.21322 0.99221 0.90165 0.96855 1.22926 1.02146 0.95192 0.96145 1.22848 1.01101 0.96466 0.97474 1.22993 1.01411 0.95338 0.97091 1.68477 1.41104 0.98066 1.23814 1.19940 0.85392 0.90832 0.87944 1.19307 0.95039 0.87724 1.42069 0.89101 1.26080 0.94933 1.01193 0.93641 1.70143 1.06847 1.28395 1.28223 0.86192 0.80203 0.79917 0.79625 1.19241 1.20112 1.18434 1.69206 1.08990 1.25688 1.18790 0.91889 0.91210 0.92504 0.87943 0.88646 0.89959 0.91770 0.90548 0.91779 0.91872 0.89524 0.91519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.76 10.21 36.01 0.37 -1.39 16 2 C 0.17 4.30 6.83 -82.25 -0.56 3.74 16 3 C -0.36 -8.35 8.55 -38.96 -0.33 -8.68 16 4 C 0.20 4.67 6.22 -82.26 -0.51 4.16 16 5 C -0.06 -1.05 4.17 -90.96 -0.38 -1.43 16 6 C -0.13 -1.96 7.57 -25.83 -0.20 -2.15 16 7 C -0.14 -1.82 8.09 -25.82 -0.21 -2.02 16 8 C -0.13 -1.98 7.47 -25.92 -0.19 -2.17 16 9 N -0.59 -16.39 10.29 -8.88 -0.09 -16.48 16 10 C 0.40 11.63 7.36 -158.31 -1.16 10.46 16 11 C -0.41 -11.50 9.37 -37.62 -0.35 -11.86 16 12 H 0.09 2.48 7.86 -52.49 -0.41 2.07 16 13 C 0.07 1.77 5.49 -17.35 -0.10 1.67 16 14 N -0.71 -19.20 11.46 55.55 0.64 -18.57 16 15 Si 0.92 18.99 29.56 -169.99 -5.03 13.97 16 16 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 17 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 18 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 19 N -0.51 -14.49 7.84 -8.88 -0.07 -14.56 16 20 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 21 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 22 H 0.06 0.94 8.10 -51.92 -0.42 0.52 16 23 H 0.10 2.03 6.66 -52.48 -0.35 1.68 16 24 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 25 H 0.08 1.33 7.80 -51.93 -0.40 0.92 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.06 0.73 8.14 -51.92 -0.42 0.30 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.09 1.34 6.28 -51.93 -0.33 1.01 16 31 H 0.27 6.61 8.29 -40.82 -0.34 6.27 16 LS Contribution 263.77 15.07 3.98 3.98 Total: -1.00 -30.95 263.77 -8.21 -39.16 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -4.01 Total: 2.17 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: -3.63 Total: -9.67 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: 0.48 Total: -49.61 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.03 Total: 13.97 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -30.95 -8.21 -39.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259173514.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.939 kcal (2) G-P(sol) polarization free energy of solvation -30.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds