Wall clock time and date at job start Mon Mar 30 2020 03:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39099 * 120.37150 * 2 1 4 4 C 1.39052 * 118.67501 * 180.26001 * 3 2 1 5 5 C 1.50696 * 120.37377 * 179.72631 * 4 3 2 6 6 C 1.53780 * 113.61260 * 61.73566 * 5 4 3 7 7 C 1.53959 * 87.01984 * 220.04737 * 6 5 4 8 8 C 1.53779 * 113.61260 * 324.13039 * 5 4 3 9 9 N 1.31914 * 119.25725 * 359.43523 * 4 3 2 10 10 C 1.33437 * 120.68688 * 0.57896 * 9 4 3 11 11 C 1.41594 * 119.28322 * 179.72244 * 10 9 4 12 12 H 1.08001 * 120.00191 * 353.63657 * 11 10 9 13 13 C 1.40069 * 120.00046 * 173.63234 * 11 10 9 14 14 N 1.30685 * 120.00262 * 6.31813 * 13 11 10 15 15 Si 1.86806 * 119.99877 * 186.31312 * 13 11 10 16 16 H 1.48498 * 109.46785 * 84.99242 * 15 13 11 17 17 H 1.48498 * 109.46956 * 204.99152 * 15 13 11 18 18 H 1.48499 * 109.47135 * 324.99005 * 15 13 11 19 19 N 1.31877 * 120.36981 * 179.97438 * 2 1 3 20 20 H 1.08999 * 109.47573 * 89.99703 * 1 2 3 21 21 H 1.08994 * 109.47250 * 210.00210 * 1 2 3 22 22 H 1.09011 * 109.46778 * 329.99690 * 1 2 3 23 23 H 1.08007 * 120.66113 * 359.97438 * 3 2 1 24 24 H 1.08995 * 112.85476 * 192.93324 * 5 4 3 25 25 H 1.09001 * 113.62061 * 334.56833 * 6 5 4 26 26 H 1.09005 * 113.61480 * 105.47756 * 6 5 4 27 27 H 1.08997 * 113.53957 * 270.81010 * 7 6 5 28 28 H 1.09008 * 113.74247 * 139.94187 * 7 6 5 29 29 H 1.09003 * 113.61677 * 254.52717 * 8 5 4 30 30 H 1.09001 * 113.61564 * 25.43302 * 8 5 4 31 31 H 0.96998 * 120.00400 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2103 1.2001 0.0000 4 6 3.6002 1.1589 -0.0055 5 6 4.4003 2.4359 -0.0119 6 6 4.1670 3.3153 1.2279 7 6 4.1989 4.5253 0.2765 8 6 3.7564 3.5621 -0.8378 9 7 4.2106 -0.0105 0.0007 10 6 3.5084 -1.1452 0.0007 11 6 4.1942 -2.3840 0.0015 12 1 5.2690 -2.4063 -0.1015 13 6 3.4785 -3.5805 0.1360 14 7 2.1718 -3.5639 0.1365 15 14 4.3921 -5.2002 0.3145 16 1 4.7433 -5.4157 1.7411 17 1 3.5261 -6.3112 -0.1554 18 1 5.6329 -5.1610 -0.5005 19 7 2.1738 -1.1378 0.0005 20 1 -0.3634 0.0001 -1.0276 21 1 -0.3633 -0.8899 0.5138 22 1 -0.3633 0.8901 0.5139 23 1 1.6872 2.1450 -0.0004 24 1 5.4537 2.2744 -0.2406 25 1 3.1973 3.1564 1.6998 26 1 4.9931 3.2958 1.9388 27 1 5.1976 4.9358 0.1277 28 1 3.4582 5.2892 0.5129 29 1 4.2515 3.7416 -1.7921 30 1 2.6743 3.4708 -0.9317 31 1 1.6762 -4.3924 0.2300 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259173514.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:57 Heat of formation + Delta-G solvation = 32.107330 kcal Electronic energy + Delta-G solvation = -14289.634052 eV Core-core repulsion = 11956.421700 eV Total energy + Delta-G solvation = -2333.212352 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.19089 -39.20627 -35.68990 -34.53737 -32.45119 -29.22078 -28.22882 -26.75736 -26.41260 -23.56523 -22.05997 -20.32671 -19.22898 -17.80139 -17.02864 -16.42021 -15.98188 -15.46467 -15.32505 -14.92741 -14.00029 -13.80553 -13.42243 -13.29770 -13.21758 -13.18523 -12.78917 -12.72227 -12.55543 -12.03472 -11.56111 -11.44486 -11.30108 -11.11621 -10.77487 -10.53548 -9.72111 -9.24698 -8.42106 -6.73657 0.74912 1.03843 1.37557 1.49877 1.53106 2.19594 2.73246 3.65741 3.72524 3.76462 3.93635 3.96839 4.19915 4.23074 4.38913 4.70040 4.75868 4.85157 4.87610 4.90116 4.93018 4.99925 5.10176 5.13365 5.16095 5.32700 5.34540 5.45997 5.66851 5.89353 6.17567 6.60053 6.66903 7.27576 8.27106 8.40375 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.039631 B = 0.008194 C = 0.007033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.346596 B = 3416.190389 C = 3980.454817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.148 3.852 3 C -0.358 4.358 4 C 0.183 3.817 5 C -0.075 4.075 6 C -0.124 4.124 7 C -0.117 4.117 8 C -0.125 4.125 9 N -0.630 5.630 10 C 0.366 3.634 11 C -0.448 4.448 12 H 0.084 0.916 13 C 0.025 3.975 14 N -0.748 5.748 15 Si 0.999 3.001 16 H -0.261 1.261 17 H -0.259 1.259 18 H -0.257 1.257 19 N -0.545 5.545 20 H 0.078 0.922 21 H 0.058 0.942 22 H 0.092 0.908 23 H 0.139 0.861 24 H 0.087 0.913 25 H 0.076 0.924 26 H 0.069 0.931 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.782 8.913 0.455 8.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.004 4.004 3 C -0.384 4.384 4 C 0.033 3.967 5 C -0.094 4.094 6 C -0.163 4.163 7 C -0.154 4.154 8 C -0.163 4.163 9 N -0.351 5.351 10 C 0.127 3.873 11 C -0.484 4.484 12 H 0.102 0.898 13 C -0.198 4.198 14 N -0.371 5.371 15 Si 0.818 3.182 16 H -0.186 1.186 17 H -0.183 1.183 18 H -0.181 1.181 19 N -0.265 5.265 20 H 0.097 0.903 21 H 0.077 0.923 22 H 0.111 0.889 23 H 0.157 0.843 24 H 0.105 0.895 25 H 0.094 0.906 26 H 0.088 0.912 27 H 0.113 0.887 28 H 0.107 0.893 29 H 0.092 0.908 30 H 0.104 0.896 31 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.498 7.843 0.460 7.872 hybrid contribution -0.075 -0.193 0.039 0.210 sum -0.573 7.650 0.499 7.687 Atomic orbital electron populations 1.20559 0.87689 1.02850 1.02804 1.22396 0.98501 0.89571 0.89923 1.21929 0.95144 0.99018 1.22356 1.21780 0.92141 0.93568 0.89247 1.21604 0.98450 0.88877 1.00473 1.22939 1.02022 0.95748 0.95547 1.22770 1.02854 0.95504 0.94263 1.22995 1.01132 0.94057 0.98067 1.68544 1.41885 0.99045 1.25624 1.20382 0.86385 0.91866 0.88672 1.19624 0.95079 0.89139 1.44522 0.89812 1.27043 0.95793 1.04484 0.92470 1.70208 1.08419 1.30010 1.28417 0.84988 0.78785 0.74687 0.79748 1.18567 1.18337 1.18116 1.69205 1.08841 1.27704 1.20705 0.90296 0.92262 0.88922 0.84326 0.89516 0.90555 0.91231 0.88690 0.89274 0.90835 0.89618 0.90597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.08 10.21 71.24 0.73 -2.35 16 2 C 0.15 7.36 6.83 42.76 0.29 7.65 16 3 C -0.36 -16.13 8.55 22.67 0.19 -15.94 16 4 C 0.18 8.78 6.22 42.74 0.27 9.04 16 5 C -0.07 -2.70 4.17 -11.02 -0.05 -2.75 16 6 C -0.12 -3.59 7.57 31.18 0.24 -3.35 16 7 C -0.12 -2.52 8.09 31.18 0.25 -2.27 16 8 C -0.12 -3.42 7.47 31.12 0.23 -3.19 16 9 N -0.63 -36.09 10.29 -182.02 -1.87 -37.96 16 10 C 0.37 22.42 7.36 135.15 0.99 23.41 16 11 C -0.45 -26.62 9.37 23.54 0.22 -26.40 16 12 H 0.08 4.84 7.86 -2.91 -0.02 4.82 16 13 C 0.03 1.34 5.49 85.31 0.47 1.81 16 14 N -0.75 -41.31 11.46 21.84 0.25 -41.06 16 15 Si 1.00 39.59 29.56 68.60 2.03 41.62 16 16 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 17 H -0.26 -9.47 7.11 99.48 0.71 -8.77 16 18 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 19 N -0.55 -32.09 7.84 -182.00 -1.43 -33.52 16 20 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 21 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 22 H 0.09 2.78 8.10 -2.38 -0.02 2.76 16 23 H 0.14 5.09 6.66 -2.91 -0.02 5.08 16 24 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 25 H 0.08 2.29 7.80 -2.39 -0.02 2.27 16 26 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 27 H 0.09 1.75 8.14 -2.39 -0.02 1.74 16 28 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 29 H 0.07 1.86 8.14 -2.39 -0.02 1.85 16 30 H 0.09 2.37 6.28 -2.39 -0.01 2.35 16 31 H 0.28 13.90 8.29 -92.71 -0.77 13.13 16 Total: -1.00 -70.82 263.77 3.94 -66.88 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: 1.12 Total: 18.37 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: 3.84 Total: -14.33 kcal Atomic # 7 Polarization: -109.49 SS G_CDS: -3.05 Total: -112.54 kcal Atomic # 14 Polarization: 39.59 SS G_CDS: 2.03 Total: 41.62 kcal Total: -70.82 3.94 -66.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259173514.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.988 kcal (2) G-P(sol) polarization free energy of solvation -70.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds