Wall clock time and date at job start Mon Mar 30 2020 03:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31809 * 119.16844 * 2 1 4 4 C 1.32194 * 120.64571 * 179.84860 * 3 2 1 5 5 C 1.39016 * 119.26583 * 0.04108 * 4 3 2 6 6 C 1.37765 * 118.47446 * 0.19595 * 5 4 3 7 7 N 1.31606 * 119.16110 * 179.97438 * 2 1 3 8 8 C 1.50447 * 122.58088 * 179.27717 * 6 5 4 9 9 C 1.52780 * 110.46361 * 17.89444 * 8 6 5 10 10 H 1.09004 * 109.59050 * 68.72151 * 9 8 6 11 11 C 1.50698 * 109.78704 * 189.18096 * 9 8 6 12 12 H 1.08005 * 119.99918 * 119.18469 * 11 9 8 13 13 C 1.37875 * 120.00092 * 299.18151 * 11 9 8 14 14 N 1.31509 * 120.00215 * 0.02562 * 13 11 9 15 15 Si 1.86805 * 119.99902 * 180.02562 * 13 11 9 16 16 H 1.48493 * 109.47150 * 89.99810 * 15 13 11 17 17 H 1.48496 * 109.46903 * 210.00141 * 15 13 11 18 18 H 1.48497 * 109.47135 * 329.99627 * 15 13 11 19 19 C 1.53303 * 108.56692 * 309.01245 * 9 8 6 20 20 C 1.50342 * 118.73360 * 180.49401 * 5 4 3 21 21 H 1.08997 * 109.46562 * 89.99959 * 1 2 3 22 22 H 1.08992 * 109.47370 * 210.00237 * 1 2 3 23 23 H 1.08995 * 109.46537 * 330.00785 * 1 2 3 24 24 H 1.07994 * 120.36834 * 179.75875 * 4 3 2 25 25 H 1.08999 * 109.30129 * 138.22536 * 8 6 5 26 26 H 1.08992 * 109.30498 * 257.62545 * 8 6 5 27 27 H 0.97000 * 120.00277 * 180.02562 * 14 13 11 28 28 H 1.09005 * 109.63107 * 309.99943 * 19 9 8 29 29 H 1.09000 * 109.79883 * 189.50206 * 19 9 8 30 30 H 1.08997 * 109.30838 * 317.88369 * 20 5 4 31 31 H 1.09003 * 109.31042 * 77.49537 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1494 1.1509 0.0000 4 6 3.4709 1.1850 0.0030 5 6 4.1816 -0.0098 0.0053 6 6 3.4765 -1.1933 0.0002 7 7 2.1483 -1.1493 0.0005 8 6 4.1510 -2.5381 -0.0138 9 6 5.6105 -2.4081 0.4188 10 1 5.6565 -2.1484 1.4765 11 6 6.3296 -3.7118 0.1860 12 1 7.1733 -3.7504 -0.4873 13 6 5.9107 -4.8552 0.8325 14 7 4.8832 -4.8084 1.6520 15 14 6.8026 -6.4711 0.5444 16 1 7.9014 -6.6131 1.5331 17 1 5.8480 -7.5979 0.6999 18 1 7.3672 -6.4869 -0.8289 19 6 6.2693 -1.3010 -0.4122 20 6 5.6840 0.0429 0.0201 21 1 -0.3632 0.0000 -1.0277 22 1 -0.3634 -0.8899 0.5138 23 1 -0.3632 0.8900 0.5137 24 1 3.9927 2.1305 -0.0009 25 1 3.6306 -3.2093 0.6693 26 1 4.1099 -2.9513 -1.0215 27 1 4.5886 -5.6127 2.1071 28 1 6.0648 -1.4663 -1.4701 29 1 7.3460 -1.3032 -0.2427 30 1 6.0241 0.8208 -0.6635 31 1 6.0266 0.2743 1.0287 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259395736.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:22 Heat of formation + Delta-G solvation = 21.448834 kcal Electronic energy + Delta-G solvation = -14424.810829 eV Core-core repulsion = 12091.136290 eV Total energy + Delta-G solvation = -2333.674539 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.74454 -36.65857 -33.58337 -32.93289 -31.33935 -29.58833 -27.50919 -25.62737 -23.19090 -22.16875 -21.73191 -18.77489 -17.31629 -16.15042 -15.54993 -14.96186 -14.56784 -14.34028 -13.38709 -13.05954 -12.79816 -12.61615 -12.32537 -12.25894 -11.92326 -11.52769 -11.19780 -10.93551 -10.79310 -10.49904 -10.40395 -9.85946 -9.57144 -9.25655 -9.01196 -8.57328 -8.49618 -8.34843 -6.06327 -4.13224 1.41585 1.64226 3.28021 3.35524 3.37992 4.21466 4.38195 4.39932 4.61890 5.11144 5.26074 5.30178 5.44774 5.63654 5.72619 5.78139 5.80806 6.01380 6.18947 6.29516 6.42232 6.57770 6.64145 6.84652 6.91473 7.05476 7.13835 7.58123 7.67176 7.81980 7.97857 8.32959 8.65882 8.91053 9.52994 11.00633 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.041810 B = 0.008224 C = 0.007094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.542264 B = 3403.656531 C = 3946.302151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.296 3.704 3 N -0.538 5.538 4 C 0.137 3.863 5 C -0.189 4.189 6 C 0.203 3.797 7 N -0.523 5.523 8 C -0.069 4.069 9 C 0.052 3.948 10 H 0.031 0.969 11 C -0.517 4.517 12 H 0.059 0.941 13 C 0.063 3.937 14 N -0.888 5.888 15 Si 0.893 3.107 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.113 4.113 20 C -0.070 4.070 21 H 0.078 0.922 22 H 0.082 0.918 23 H 0.078 0.922 24 H 0.159 0.841 25 H 0.114 0.886 26 H 0.070 0.930 27 H 0.262 0.738 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.921 8.670 -2.868 9.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.028 3.972 3 N -0.254 5.254 4 C -0.029 4.029 5 C -0.193 4.193 6 C 0.060 3.940 7 N -0.238 5.238 8 C -0.107 4.107 9 C 0.033 3.967 10 H 0.049 0.951 11 C -0.555 4.555 12 H 0.078 0.922 13 C -0.139 4.139 14 N -0.526 5.526 15 Si 0.721 3.279 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.151 4.151 20 C -0.108 4.108 21 H 0.097 0.903 22 H 0.100 0.900 23 H 0.097 0.903 24 H 0.176 0.824 25 H 0.131 0.869 26 H 0.089 0.911 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.045 8.541 -2.752 9.843 hybrid contribution 1.300 -0.822 -0.079 1.540 sum -2.745 7.719 -2.830 8.667 Atomic orbital electron populations 1.20451 0.86557 1.03527 1.03179 1.23097 0.97867 0.84005 0.92238 1.68125 1.09903 1.30759 1.16567 1.23118 0.89696 0.97909 0.92192 1.21286 0.99104 0.94578 1.04330 1.22353 0.88319 0.97495 0.85821 1.68379 1.10385 1.29908 1.15125 1.20838 0.98412 0.88654 1.02759 1.18676 0.89818 0.93045 0.95142 0.95113 1.21121 1.14769 0.92855 1.26761 0.92245 1.25014 0.94971 0.99121 0.94827 1.69869 1.25363 1.28892 1.28517 0.86581 0.79479 0.83266 0.78621 1.20662 1.21202 1.19868 1.21702 0.99713 0.93585 1.00075 1.20370 0.89052 0.99823 1.01532 0.90331 0.89951 0.90310 0.82365 0.86856 0.91139 0.92760 0.93042 0.92081 0.91727 0.90853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.07 10.32 36.01 0.37 -0.70 16 2 C 0.30 5.42 7.64 -157.34 -1.20 4.22 16 3 N -0.54 -9.60 10.34 -10.69 -0.11 -9.71 16 4 C 0.14 2.28 10.94 -17.11 -0.19 2.10 16 5 C -0.19 -3.51 5.73 -104.68 -0.60 -4.11 16 6 C 0.20 4.37 6.62 -82.43 -0.55 3.82 16 7 N -0.52 -11.00 10.22 -7.18 -0.07 -11.08 16 8 C -0.07 -1.63 4.93 -28.12 -0.14 -1.77 16 9 C 0.05 1.25 2.10 -91.73 -0.19 1.05 16 10 H 0.03 0.80 8.10 -51.93 -0.42 0.38 16 11 C -0.52 -13.60 8.54 -34.44 -0.29 -13.89 16 12 H 0.06 1.53 7.75 -52.48 -0.41 1.12 16 13 C 0.06 1.69 5.31 -17.82 -0.09 1.59 16 14 N -0.89 -24.88 11.50 55.43 0.64 -24.25 16 15 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 19 C -0.11 -2.21 5.22 -26.66 -0.14 -2.35 16 20 C -0.07 -1.15 5.72 -28.14 -0.16 -1.32 16 21 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 22 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 23 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.16 2.02 8.06 -52.49 -0.42 1.59 16 25 H 0.11 3.03 6.43 -51.93 -0.33 2.70 16 26 H 0.07 1.69 8.11 -51.93 -0.42 1.27 16 27 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 28 H 0.05 0.99 8.10 -51.93 -0.42 0.57 16 29 H 0.06 1.14 8.12 -51.93 -0.42 0.71 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 259.68 15.07 3.91 3.91 Total: -1.00 -29.05 259.68 -7.93 -36.99 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -4.10 Total: -0.24 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -3.18 Total: -11.35 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: 0.45 Total: -45.04 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -29.05 -7.93 -36.99 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259395736.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.436 kcal (2) G-P(sol) polarization free energy of solvation -29.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds