Wall clock time and date at job start Mon Mar 30 2020 03:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31809 * 119.16844 * 2 1 4 4 C 1.32194 * 120.64571 * 179.84860 * 3 2 1 5 5 C 1.39016 * 119.26583 * 0.04108 * 4 3 2 6 6 C 1.37765 * 118.47446 * 0.19595 * 5 4 3 7 7 N 1.31606 * 119.16110 * 179.97438 * 2 1 3 8 8 C 1.50447 * 122.58088 * 179.27717 * 6 5 4 9 9 C 1.52780 * 110.46361 * 17.89444 * 8 6 5 10 10 H 1.09004 * 109.59050 * 68.72151 * 9 8 6 11 11 C 1.50698 * 109.78704 * 189.18096 * 9 8 6 12 12 H 1.08005 * 119.99918 * 119.18469 * 11 9 8 13 13 C 1.37875 * 120.00092 * 299.18151 * 11 9 8 14 14 N 1.31509 * 120.00215 * 0.02562 * 13 11 9 15 15 Si 1.86805 * 119.99902 * 180.02562 * 13 11 9 16 16 H 1.48493 * 109.47150 * 89.99810 * 15 13 11 17 17 H 1.48496 * 109.46903 * 210.00141 * 15 13 11 18 18 H 1.48497 * 109.47135 * 329.99627 * 15 13 11 19 19 C 1.53303 * 108.56692 * 309.01245 * 9 8 6 20 20 C 1.50342 * 118.73360 * 180.49401 * 5 4 3 21 21 H 1.08997 * 109.46562 * 89.99959 * 1 2 3 22 22 H 1.08992 * 109.47370 * 210.00237 * 1 2 3 23 23 H 1.08995 * 109.46537 * 330.00785 * 1 2 3 24 24 H 1.07994 * 120.36834 * 179.75875 * 4 3 2 25 25 H 1.08999 * 109.30129 * 138.22536 * 8 6 5 26 26 H 1.08992 * 109.30498 * 257.62545 * 8 6 5 27 27 H 0.97000 * 120.00277 * 180.02562 * 14 13 11 28 28 H 1.09005 * 109.63107 * 309.99943 * 19 9 8 29 29 H 1.09000 * 109.79883 * 189.50206 * 19 9 8 30 30 H 1.08997 * 109.30838 * 317.88369 * 20 5 4 31 31 H 1.09003 * 109.31042 * 77.49537 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1494 1.1509 0.0000 4 6 3.4709 1.1850 0.0030 5 6 4.1816 -0.0098 0.0053 6 6 3.4765 -1.1933 0.0002 7 7 2.1483 -1.1493 0.0005 8 6 4.1510 -2.5381 -0.0138 9 6 5.6105 -2.4081 0.4188 10 1 5.6565 -2.1484 1.4765 11 6 6.3296 -3.7118 0.1860 12 1 7.1733 -3.7504 -0.4873 13 6 5.9107 -4.8552 0.8325 14 7 4.8832 -4.8084 1.6520 15 14 6.8026 -6.4711 0.5444 16 1 7.9014 -6.6131 1.5331 17 1 5.8480 -7.5979 0.6999 18 1 7.3672 -6.4869 -0.8289 19 6 6.2693 -1.3010 -0.4122 20 6 5.6840 0.0429 0.0201 21 1 -0.3632 0.0000 -1.0277 22 1 -0.3634 -0.8899 0.5138 23 1 -0.3632 0.8900 0.5137 24 1 3.9927 2.1305 -0.0009 25 1 3.6306 -3.2093 0.6693 26 1 4.1099 -2.9513 -1.0215 27 1 4.5886 -5.6127 2.1071 28 1 6.0648 -1.4663 -1.4701 29 1 7.3460 -1.3032 -0.2427 30 1 6.0241 0.8208 -0.6635 31 1 6.0266 0.2743 1.0287 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259395736.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:22 Heat of formation + Delta-G solvation = 4.414032 kcal Electronic energy + Delta-G solvation = -14425.549513 eV Core-core repulsion = 12091.136290 eV Total energy + Delta-G solvation = -2334.413224 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.19183 -38.28128 -35.11047 -34.70372 -32.84859 -31.22361 -28.93870 -27.46100 -24.72539 -23.71468 -23.30383 -20.44715 -18.91340 -18.02541 -17.01906 -16.44647 -16.40449 -15.78225 -14.85072 -14.59257 -14.53789 -14.06821 -13.79484 -13.58504 -13.21904 -13.16599 -12.89473 -12.61005 -12.55470 -12.31550 -12.01156 -11.52910 -11.24222 -11.03041 -10.87082 -10.50135 -10.03888 -9.86079 -8.11461 -6.25728 0.01754 0.16622 1.42323 1.43699 1.53501 2.43133 2.78672 3.06486 3.18853 3.29675 3.72468 3.91931 4.00360 4.34561 4.35105 4.60586 4.70926 4.75910 4.80790 4.85427 4.90929 5.04812 5.08515 5.23418 5.26684 5.42080 5.58392 5.62366 5.89311 6.00612 6.15610 6.32719 6.86604 7.22184 7.44155 8.94130 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.041810 B = 0.008224 C = 0.007094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.542264 B = 3403.656531 C = 3946.302151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.284 3.716 3 N -0.538 5.538 4 C 0.151 3.849 5 C -0.194 4.194 6 C 0.170 3.830 7 N -0.554 5.554 8 C -0.054 4.054 9 C 0.049 3.951 10 H -0.001 1.001 11 C -0.532 4.532 12 H 0.062 0.938 13 C 0.011 3.989 14 N -0.920 5.920 15 Si 0.955 3.045 16 H -0.274 1.274 17 H -0.288 1.288 18 H -0.265 1.265 19 C -0.107 4.107 20 C -0.062 4.062 21 H 0.097 0.903 22 H 0.082 0.918 23 H 0.099 0.901 24 H 0.208 0.792 25 H 0.072 0.928 26 H 0.053 0.947 27 H 0.260 0.740 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.108 0.892 31 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.397 10.703 -3.621 11.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.017 3.983 3 N -0.253 5.253 4 C -0.017 4.017 5 C -0.198 4.198 6 C 0.028 3.972 7 N -0.270 5.270 8 C -0.092 4.092 9 C 0.030 3.970 10 H 0.018 0.982 11 C -0.570 4.570 12 H 0.080 0.920 13 C -0.188 4.188 14 N -0.559 5.559 15 Si 0.781 3.219 16 H -0.200 1.200 17 H -0.214 1.214 18 H -0.190 1.190 19 C -0.144 4.144 20 C -0.100 4.100 21 H 0.115 0.885 22 H 0.101 0.899 23 H 0.118 0.882 24 H 0.224 0.776 25 H 0.091 0.909 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.127 0.873 31 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.516 10.571 -3.513 11.682 hybrid contribution 1.094 -1.396 0.160 1.781 sum -2.422 9.175 -3.353 10.064 Atomic orbital electron populations 1.20597 0.83618 1.04554 1.04658 1.23902 0.99719 0.83412 0.91254 1.68280 1.10571 1.30142 1.16319 1.23847 0.89339 0.98866 0.89603 1.21498 1.00249 0.94138 1.03952 1.22053 0.89110 0.97365 0.88677 1.68308 1.10540 1.31776 1.16396 1.20409 0.98342 0.89892 1.00544 1.18622 0.90296 0.93971 0.94114 0.98246 1.21551 1.14893 0.94184 1.26411 0.91963 1.25816 0.95679 1.02522 0.94733 1.70034 1.26792 1.29492 1.29575 0.85594 0.78303 0.79144 0.78875 1.20004 1.21359 1.18952 1.21579 1.00002 0.93777 0.99084 1.20388 0.87481 0.99001 1.03134 0.88484 0.89947 0.88210 0.77552 0.90942 0.92906 0.93044 0.93075 0.91114 0.87345 0.89877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.93 10.32 71.24 0.74 -1.20 16 2 C 0.28 10.06 7.64 138.80 1.06 11.12 16 3 N -0.54 -17.69 10.34 -187.73 -1.94 -19.63 16 4 C 0.15 4.47 10.94 84.83 0.93 5.40 16 5 C -0.19 -6.87 5.73 -19.90 -0.11 -6.98 16 6 C 0.17 7.42 6.62 42.21 0.28 7.70 16 7 N -0.55 -23.61 10.22 -176.64 -1.80 -25.41 16 8 C -0.05 -2.67 4.93 29.70 0.15 -2.52 16 9 C 0.05 2.41 2.10 -11.51 -0.02 2.38 16 10 H 0.00 -0.03 8.10 -2.38 -0.02 -0.05 16 11 C -0.53 -28.64 8.54 25.60 0.22 -28.43 16 12 H 0.06 3.22 7.75 -2.91 -0.02 3.20 16 13 C 0.01 0.62 5.31 84.65 0.45 1.07 16 14 N -0.92 -53.73 11.50 21.45 0.25 -53.49 16 15 Si 0.96 43.25 29.54 68.60 2.03 45.27 16 16 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 17 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 18 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 19 C -0.11 -4.05 5.22 30.64 0.16 -3.89 16 20 C -0.06 -1.88 5.72 29.68 0.17 -1.71 16 21 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 22 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 23 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 24 H 0.21 4.04 8.06 -2.91 -0.02 4.01 16 25 H 0.07 4.16 6.43 -2.39 -0.02 4.14 16 26 H 0.05 2.69 8.11 -2.39 -0.02 2.68 16 27 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 28 H 0.05 1.92 8.10 -2.38 -0.02 1.90 16 29 H 0.07 2.52 8.12 -2.39 -0.02 2.50 16 30 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -65.28 259.68 3.65 -61.63 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: 1.11 Total: 8.68 kcal Atomic # 6 Polarization: -21.07 SS G_CDS: 4.01 Total: -17.06 kcal Atomic # 7 Polarization: -95.03 SS G_CDS: -3.50 Total: -98.53 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Total: -65.28 3.65 -61.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259395736.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.045 kcal (2) G-P(sol) polarization free energy of solvation -65.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds