Wall clock time and date at job start Mon Mar 30 2020 02:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35900 * 116.99765 * 2 1 4 4 C 1.38753 * 120.09073 * 359.97438 * 3 2 1 5 5 C 1.38006 * 119.87573 * 179.97438 * 4 3 2 6 6 C 1.38539 * 120.29168 * 359.97438 * 5 4 3 7 7 C 1.38260 * 119.94127 * 0.02562 * 6 5 4 8 8 C 1.38418 * 119.89922 * 359.97438 * 7 6 5 9 9 C 1.51377 * 109.75909 * 179.97438 * 7 6 5 10 10 C 1.54331 * 105.17042 * 342.79724 * 9 7 6 11 11 H 1.08997 * 110.99401 * 268.06484 * 10 9 7 12 12 C 1.50706 * 110.82259 * 144.59582 * 10 9 7 13 13 H 1.08005 * 119.99758 * 5.57150 * 12 10 9 14 14 C 1.37871 * 120.00102 * 185.57034 * 12 10 9 15 15 N 1.31516 * 120.00217 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 119.99766 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47057 * 179.97438 * 16 14 12 18 18 H 1.48500 * 109.47389 * 300.00068 * 16 14 12 19 19 H 1.48504 * 109.47102 * 60.00417 * 16 14 12 20 20 C 1.51395 * 130.32220 * 179.97438 * 6 5 4 21 21 H 1.09000 * 109.47787 * 300.00134 * 1 2 3 22 22 H 1.08999 * 109.47145 * 60.00890 * 1 2 3 23 23 H 1.09003 * 109.47101 * 179.97438 * 1 2 3 24 24 H 1.08004 * 120.06384 * 0.02562 * 4 3 2 25 25 H 1.07998 * 119.85323 * 179.97438 * 5 4 3 26 26 H 1.08002 * 119.91154 * 180.02562 * 8 7 6 27 27 H 1.09006 * 110.30297 * 223.86900 * 9 7 6 28 28 H 1.09008 * 110.30006 * 101.72459 * 9 7 6 29 29 H 0.97001 * 119.99646 * 359.97438 * 15 14 12 30 30 H 1.09000 * 110.30163 * 78.30444 * 20 6 5 31 31 H 1.09001 * 110.38797 * 316.19434 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2920 2.3758 -0.0005 5 6 1.9231 3.6031 0.0000 6 6 3.3065 3.6775 0.0016 7 6 4.0599 2.5182 0.0021 8 6 3.4298 1.2858 0.0016 9 6 5.5333 2.8654 0.0033 10 6 5.6004 4.3431 -0.4371 11 1 5.7213 4.4234 -1.5174 12 6 6.7120 5.0657 0.2793 13 1 7.3858 4.5183 0.9219 14 6 6.8690 6.4255 0.1143 15 7 6.0483 7.0921 -0.6679 16 14 8.2465 7.3212 1.0029 17 1 8.1999 8.7653 0.6599 18 1 8.0804 7.1545 2.4691 19 1 9.5547 6.7558 0.5854 20 6 4.2228 4.8827 0.0020 21 1 -0.3635 0.5138 0.8899 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 0.2133 2.3221 -0.0005 25 1 1.3360 4.5095 -0.0008 26 1 4.0181 0.3801 0.0025 27 1 6.0711 2.2349 -0.7048 28 1 5.9483 2.7499 1.0047 29 1 5.3328 6.6270 -1.1290 30 1 4.2855 5.3098 1.0028 31 1 3.8664 5.6308 -0.7062 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259596113.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:37 Heat of formation + Delta-G solvation = -27.280609 kcal Electronic energy + Delta-G solvation = -14150.847987 eV Core-core repulsion = 11782.767630 eV Total energy + Delta-G solvation = -2368.080358 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.02197 -38.19041 -34.86588 -32.12113 -30.92924 -28.04191 -27.73452 -25.66485 -24.40458 -21.80301 -20.29275 -19.76062 -17.30561 -16.88701 -15.88535 -15.61317 -14.86177 -14.36612 -13.86261 -13.73937 -13.13894 -12.92802 -12.45329 -11.94135 -11.75670 -11.63826 -11.17476 -11.09995 -10.69480 -10.64678 -10.20050 -10.08930 -9.91922 -9.59304 -8.53446 -8.40560 -8.32755 -7.53000 -6.33841 -4.07532 1.74068 1.86908 3.40229 3.44781 3.45833 3.64652 4.16885 4.53193 4.96430 5.11237 5.12081 5.22657 5.37981 5.41251 5.53126 5.64745 5.84895 5.92673 6.26515 6.27212 6.34568 6.61449 6.70321 6.78880 6.83535 7.03368 7.08586 7.26092 7.35648 7.60916 7.68472 8.21462 8.42492 8.87674 9.64820 11.03758 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.073951 B = 0.006317 C = 0.005992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 378.536910 B = 4431.588946 C = 4671.503000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.323 6.323 3 C 0.109 3.891 4 C -0.214 4.214 5 C -0.081 4.081 6 C -0.116 4.116 7 C -0.053 4.053 8 C -0.146 4.146 9 C -0.072 4.072 10 C 0.038 3.962 11 H 0.027 0.973 12 C -0.595 4.595 13 H 0.052 0.948 14 C 0.021 3.979 15 N -0.912 5.912 16 Si 1.067 2.933 17 H -0.283 1.283 18 H -0.288 1.288 19 H -0.288 1.288 20 C -0.074 4.074 21 H 0.052 0.948 22 H 0.052 0.948 23 H 0.094 0.906 24 H 0.121 0.879 25 H 0.117 0.883 26 H 0.122 0.878 27 H 0.059 0.941 28 H 0.077 0.923 29 H 0.272 0.728 30 H 0.074 0.926 31 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.287 -9.659 1.421 13.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.237 6.237 3 C 0.064 3.936 4 C -0.233 4.233 5 C -0.099 4.099 6 C -0.116 4.116 7 C -0.053 4.053 8 C -0.165 4.165 9 C -0.109 4.109 10 C 0.019 3.981 11 H 0.045 0.955 12 C -0.633 4.633 13 H 0.070 0.930 14 C -0.184 4.184 15 N -0.549 5.549 16 Si 0.896 3.104 17 H -0.208 1.208 18 H -0.215 1.215 19 H -0.214 1.214 20 C -0.111 4.111 21 H 0.070 0.930 22 H 0.070 0.930 23 H 0.113 0.887 24 H 0.139 0.861 25 H 0.135 0.865 26 H 0.140 0.860 27 H 0.077 0.923 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.517 -8.347 1.636 12.037 hybrid contribution -1.158 -1.443 -0.202 1.862 sum -9.675 -9.790 1.434 13.839 Atomic orbital electron populations 1.22955 0.79103 1.03261 1.01149 1.86013 1.20789 1.27391 1.89493 1.18719 0.92044 0.83736 0.99057 1.20961 0.99184 0.92281 1.10845 1.20441 0.93693 0.96659 0.99094 1.21166 0.93078 0.97657 0.99729 1.20810 0.97755 0.91694 0.95065 1.19786 0.90932 0.97717 1.08036 1.21231 0.89013 0.99153 1.01454 1.19536 0.92571 0.89640 0.96320 0.95494 1.21951 1.14905 0.95342 1.31090 0.92983 1.25797 1.00982 0.94991 0.96622 1.70805 1.17052 1.39609 1.27398 0.83564 0.75033 0.76185 0.75655 1.20818 1.21458 1.21445 1.21456 0.94724 0.93246 1.01693 0.92959 0.92966 0.88736 0.86092 0.86460 0.86026 0.92287 0.90458 0.91552 0.90764 0.92193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.30 16 2 O -0.32 -4.80 10.50 -19.43 -0.20 -5.00 16 3 C 0.11 1.83 6.68 -39.26 -0.26 1.57 16 4 C -0.21 -3.42 9.04 -39.48 -0.36 -3.77 16 5 C -0.08 -1.44 10.03 -39.56 -0.40 -1.83 16 6 C -0.12 -2.40 6.14 -104.16 -0.64 -3.04 16 7 C -0.05 -1.07 6.13 -104.22 -0.64 -1.71 16 8 C -0.15 -2.65 9.98 -39.39 -0.39 -3.04 16 9 C -0.07 -1.54 6.30 -26.85 -0.17 -1.71 16 10 C 0.04 0.95 2.64 -90.37 -0.24 0.71 16 11 H 0.03 0.72 8.09 -51.93 -0.42 0.30 16 12 C -0.59 -16.38 8.41 -34.44 -0.29 -16.67 16 13 H 0.05 1.42 7.66 -52.48 -0.40 1.01 16 14 C 0.02 0.58 5.33 -17.82 -0.10 0.48 16 15 N -0.91 -26.91 13.42 55.43 0.74 -26.17 16 16 Si 1.07 24.75 29.90 -169.99 -5.08 19.66 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 20 C -0.07 -1.73 5.28 -26.84 -0.14 -1.87 16 21 H 0.05 0.48 7.67 -51.93 -0.40 0.08 16 22 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 23 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.12 1.55 6.31 -52.48 -0.33 1.22 16 25 H 0.12 1.85 8.06 -52.49 -0.42 1.42 16 26 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 27 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 28 H 0.08 1.66 7.79 -51.92 -0.40 1.26 16 29 H 0.27 7.93 5.44 -40.82 -0.22 7.70 16 30 H 0.07 1.85 7.89 -51.93 -0.41 1.44 16 31 H 0.06 1.43 6.76 -51.93 -0.35 1.08 16 LS Contribution 258.58 15.07 3.90 3.90 Total: -1.00 -30.08 258.58 -7.10 -37.18 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -3.82 Total: 0.02 kcal Atomic # 6 Polarization: -26.96 SS G_CDS: -2.63 Total: -29.59 kcal Atomic # 7 Polarization: -26.91 SS G_CDS: 0.74 Total: -26.17 kcal Atomic # 8 Polarization: -4.80 SS G_CDS: -0.20 Total: -5.00 kcal Atomic # 14 Polarization: 24.75 SS G_CDS: -5.08 Total: 19.66 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -30.08 -7.10 -37.18 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259596113.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.903 kcal (2) G-P(sol) polarization free energy of solvation -30.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds