Wall clock time and date at job start Mon Mar 30 2020 02:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35900 * 116.99765 * 2 1 4 4 C 1.38753 * 120.09073 * 359.97438 * 3 2 1 5 5 C 1.38006 * 119.87573 * 179.97438 * 4 3 2 6 6 C 1.38539 * 120.29168 * 359.97438 * 5 4 3 7 7 C 1.38260 * 119.94127 * 0.02562 * 6 5 4 8 8 C 1.38418 * 119.89922 * 359.97438 * 7 6 5 9 9 C 1.51377 * 109.75909 * 179.97438 * 7 6 5 10 10 C 1.54331 * 105.17042 * 342.79724 * 9 7 6 11 11 H 1.08997 * 110.99401 * 268.06484 * 10 9 7 12 12 C 1.50706 * 110.82259 * 144.59582 * 10 9 7 13 13 H 1.08005 * 119.99758 * 5.57150 * 12 10 9 14 14 C 1.37871 * 120.00102 * 185.57034 * 12 10 9 15 15 N 1.31516 * 120.00217 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 119.99766 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47057 * 179.97438 * 16 14 12 18 18 H 1.48500 * 109.47389 * 300.00068 * 16 14 12 19 19 H 1.48504 * 109.47102 * 60.00417 * 16 14 12 20 20 C 1.51395 * 130.32220 * 179.97438 * 6 5 4 21 21 H 1.09000 * 109.47787 * 300.00134 * 1 2 3 22 22 H 1.08999 * 109.47145 * 60.00890 * 1 2 3 23 23 H 1.09003 * 109.47101 * 179.97438 * 1 2 3 24 24 H 1.08004 * 120.06384 * 0.02562 * 4 3 2 25 25 H 1.07998 * 119.85323 * 179.97438 * 5 4 3 26 26 H 1.08002 * 119.91154 * 180.02562 * 8 7 6 27 27 H 1.09006 * 110.30297 * 223.86900 * 9 7 6 28 28 H 1.09008 * 110.30006 * 101.72459 * 9 7 6 29 29 H 0.97001 * 119.99646 * 359.97438 * 15 14 12 30 30 H 1.09000 * 110.30163 * 78.30444 * 20 6 5 31 31 H 1.09001 * 110.38797 * 316.19434 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2920 2.3758 -0.0005 5 6 1.9231 3.6031 0.0000 6 6 3.3065 3.6775 0.0016 7 6 4.0599 2.5182 0.0021 8 6 3.4298 1.2858 0.0016 9 6 5.5333 2.8654 0.0033 10 6 5.6004 4.3431 -0.4371 11 1 5.7213 4.4234 -1.5174 12 6 6.7120 5.0657 0.2793 13 1 7.3858 4.5183 0.9219 14 6 6.8690 6.4255 0.1143 15 7 6.0483 7.0921 -0.6679 16 14 8.2465 7.3212 1.0029 17 1 8.1999 8.7653 0.6599 18 1 8.0804 7.1545 2.4691 19 1 9.5547 6.7558 0.5854 20 6 4.2228 4.8827 0.0020 21 1 -0.3635 0.5138 0.8899 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 0.2133 2.3221 -0.0005 25 1 1.3360 4.5095 -0.0008 26 1 4.0181 0.3801 0.0025 27 1 6.0711 2.2349 -0.7048 28 1 5.9483 2.7499 1.0047 29 1 5.3328 6.6270 -1.1290 30 1 4.2855 5.3098 1.0028 31 1 3.8664 5.6308 -0.7062 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259596113.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:37 Heat of formation + Delta-G solvation = -44.188538 kcal Electronic energy + Delta-G solvation = -14151.581170 eV Core-core repulsion = 11782.767630 eV Total energy + Delta-G solvation = -2368.813540 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.39669 -39.57333 -36.55890 -34.01219 -32.37047 -29.71887 -28.92362 -27.05261 -26.38126 -23.37081 -21.65212 -21.59232 -18.93856 -18.55362 -17.24408 -16.64731 -16.33770 -16.11399 -15.60651 -15.33102 -14.51052 -14.20415 -14.01286 -13.61269 -13.48241 -13.16048 -12.67787 -12.63035 -12.31816 -12.29927 -11.91364 -11.59129 -11.57951 -11.43122 -10.60008 -10.51240 -9.77147 -8.97025 -8.57318 -6.32021 0.34008 0.43850 1.55830 1.63466 1.82663 2.31965 2.59778 2.73616 3.20723 3.68202 3.85540 3.95859 4.17816 4.37000 4.37462 4.39192 4.41913 4.51534 4.65483 4.74770 4.83110 4.93933 4.97734 5.19724 5.21216 5.33631 5.37919 5.59599 5.75522 5.84062 6.09288 6.22804 6.45986 6.65922 7.48987 8.80763 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.073951 B = 0.006317 C = 0.005992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 378.536910 B = 4431.588946 C = 4671.503000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.332 6.332 3 C 0.118 3.882 4 C -0.202 4.202 5 C -0.079 4.079 6 C -0.147 4.147 7 C -0.066 4.066 8 C -0.154 4.154 9 C -0.064 4.064 10 C 0.025 3.975 11 H 0.000 1.000 12 C -0.609 4.609 13 H 0.050 0.950 14 C -0.028 4.028 15 N -0.937 5.937 16 Si 1.114 2.886 17 H -0.285 1.285 18 H -0.272 1.272 19 H -0.271 1.271 20 C -0.058 4.058 21 H 0.065 0.935 22 H 0.064 0.936 23 H 0.122 0.878 24 H 0.161 0.839 25 H 0.136 0.864 26 H 0.136 0.864 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.262 0.738 30 H 0.049 0.951 31 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.815 -11.186 2.068 15.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.246 6.246 3 C 0.073 3.927 4 C -0.221 4.221 5 C -0.097 4.097 6 C -0.148 4.148 7 C -0.066 4.066 8 C -0.173 4.173 9 C -0.101 4.101 10 C 0.007 3.993 11 H 0.019 0.981 12 C -0.647 4.647 13 H 0.069 0.931 14 C -0.227 4.227 15 N -0.575 5.575 16 Si 0.936 3.064 17 H -0.210 1.210 18 H -0.197 1.197 19 H -0.196 1.196 20 C -0.096 4.096 21 H 0.083 0.917 22 H 0.083 0.917 23 H 0.140 0.860 24 H 0.178 0.822 25 H 0.154 0.846 26 H 0.154 0.846 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -10.063 -9.910 2.282 14.307 hybrid contribution -0.827 -1.105 -0.433 1.447 sum -10.890 -11.015 1.849 15.600 Atomic orbital electron populations 1.23372 0.76300 1.05689 1.02324 1.86022 1.23600 1.26141 1.88882 1.18803 0.91755 0.84935 0.97194 1.21320 1.01106 0.90925 1.08722 1.20679 0.92448 0.98506 0.98044 1.20971 0.94424 0.96134 1.03228 1.20634 0.96576 0.92651 0.96764 1.19906 0.92146 0.97195 1.08053 1.21027 0.90872 0.96852 1.01303 1.19516 0.93002 0.92305 0.94493 0.98140 1.22315 1.15512 0.95879 1.30954 0.93121 1.27226 1.02530 0.96297 0.96643 1.70905 1.17848 1.39853 1.28892 0.82966 0.73031 0.74912 0.75487 1.21040 1.19698 1.19616 1.21064 0.94864 0.94162 0.99539 0.91676 0.91738 0.85960 0.82167 0.84619 0.84633 0.91228 0.90864 0.92644 0.93262 0.93897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.33 -8.62 10.50 -92.43 -0.97 -9.59 16 3 C 0.12 3.62 6.68 22.48 0.15 3.77 16 4 C -0.20 -5.74 9.04 22.34 0.20 -5.54 16 5 C -0.08 -2.67 10.03 22.29 0.22 -2.44 16 6 C -0.15 -6.14 6.14 -19.57 -0.12 -6.26 16 7 C -0.07 -2.67 6.13 -19.60 -0.12 -2.79 16 8 C -0.15 -5.35 9.98 22.40 0.22 -5.13 16 9 C -0.06 -2.80 6.30 30.51 0.19 -2.61 16 10 C 0.03 1.33 2.64 -10.63 -0.03 1.30 16 11 H 0.00 0.03 8.09 -2.39 -0.02 0.01 16 12 C -0.61 -34.58 8.41 25.60 0.22 -34.37 16 13 H 0.05 2.81 7.66 -2.91 -0.02 2.79 16 14 C -0.03 -1.62 5.33 84.65 0.45 -1.17 16 15 N -0.94 -57.16 13.42 21.45 0.29 -56.87 16 16 Si 1.11 50.17 29.90 68.60 2.05 52.22 16 17 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 18 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 19 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 20 C -0.06 -2.88 5.28 30.52 0.16 -2.71 16 21 H 0.06 0.88 7.67 -2.39 -0.02 0.86 16 22 H 0.06 0.87 7.66 -2.39 -0.02 0.86 16 23 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.16 3.25 6.31 -2.91 -0.02 3.23 16 25 H 0.14 4.00 8.06 -2.91 -0.02 3.98 16 26 H 0.14 4.21 8.06 -2.91 -0.02 4.19 16 27 H 0.07 2.82 8.14 -2.38 -0.02 2.80 16 28 H 0.07 3.22 7.79 -2.38 -0.02 3.20 16 29 H 0.26 16.06 5.44 -92.71 -0.50 15.56 16 30 H 0.05 2.59 7.89 -2.39 -0.02 2.57 16 31 H 0.04 2.18 6.76 -2.39 -0.02 2.16 16 Total: -1.00 -66.32 258.58 5.41 -60.91 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: 1.38 Total: 9.91 kcal Atomic # 6 Polarization: -59.24 SS G_CDS: 2.66 Total: -56.58 kcal Atomic # 7 Polarization: -57.16 SS G_CDS: 0.29 Total: -56.87 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: -0.97 Total: -9.59 kcal Atomic # 14 Polarization: 50.17 SS G_CDS: 2.05 Total: 52.22 kcal Total: -66.32 5.41 -60.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259596113.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.719 kcal (2) G-P(sol) polarization free energy of solvation -66.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds