Wall clock time and date at job start Mon Mar 30 2020 02:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38750 * 120.09529 * 359.72182 * 3 2 1 5 5 C 1.38001 * 119.87641 * 179.83678 * 4 3 2 6 6 C 1.38552 * 120.29162 * 0.38323 * 5 4 3 7 7 C 1.38254 * 119.93787 * 359.86707 * 6 5 4 8 8 C 1.38422 * 119.90385 * 359.93845 * 7 6 5 9 9 C 1.51379 * 109.75506 * 179.97438 * 7 6 5 10 10 C 1.54341 * 105.17281 * 17.19233 * 9 7 6 11 11 H 1.09000 * 110.98758 * 91.93620 * 10 9 7 12 12 C 1.50696 * 110.82337 * 215.41219 * 10 9 7 13 13 H 1.07999 * 120.00105 * 354.42452 * 12 10 9 14 14 C 1.37876 * 120.00070 * 174.43110 * 12 10 9 15 15 N 1.31507 * 120.00087 * 359.97438 * 14 12 10 16 16 Si 1.86805 * 119.99967 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.47096 * 59.99456 * 16 14 12 18 18 H 1.48497 * 109.46977 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46713 * 299.99780 * 16 14 12 20 20 C 1.51381 * 130.31732 * 179.83283 * 6 5 4 21 21 H 1.08998 * 109.47043 * 59.99803 * 1 2 3 22 22 H 1.08996 * 109.46732 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47144 * 300.00205 * 1 2 3 24 24 H 1.07996 * 120.05781 * 0.02619 * 4 3 2 25 25 H 1.08000 * 119.85068 * 180.23158 * 5 4 3 26 26 H 1.08003 * 119.91051 * 179.97438 * 8 7 6 27 27 H 1.08999 * 110.30416 * 136.12156 * 9 7 6 28 28 H 1.09003 * 110.29914 * 258.26936 * 9 7 6 29 29 H 0.97002 * 120.00534 * 180.02562 * 15 14 12 30 30 H 1.09006 * 110.29931 * 281.74490 * 20 6 5 31 31 H 1.08995 * 110.30735 * 43.80064 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2921 2.3758 -0.0058 5 6 1.9232 3.6031 -0.0024 6 6 3.3067 3.6774 -0.0012 7 6 4.0600 2.5181 -0.0006 8 6 3.4299 1.2857 0.0000 9 6 5.5335 2.8654 0.0001 10 6 5.6000 4.3432 0.4402 11 1 5.7196 4.4238 1.5207 12 6 6.7125 5.0656 -0.2750 13 1 7.3870 4.5181 -0.9166 14 6 6.8693 6.4254 -0.1102 15 7 6.0477 7.0922 0.6708 16 14 8.2487 7.3208 -0.9963 17 1 8.0857 7.1535 -2.4627 18 1 8.2008 8.7652 -0.6549 19 1 9.5559 6.7553 -0.5759 20 6 4.2228 4.8826 -0.0009 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 0.2135 2.3221 -0.0099 25 1 1.3360 4.5095 -0.0031 26 1 4.0182 0.3800 0.0001 27 1 6.0703 2.2350 0.7091 28 1 5.9497 2.7496 -1.0006 29 1 6.1577 8.0490 0.7865 30 1 4.2869 5.3091 -1.0020 31 1 3.8637 5.6306 0.7059 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259596116.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:39 Heat of formation + Delta-G solvation = -24.879265 kcal Electronic energy + Delta-G solvation = -14106.948200 eV Core-core repulsion = 11738.971973 eV Total energy + Delta-G solvation = -2367.976228 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.90407 -38.03877 -34.56656 -32.06446 -30.84038 -28.19767 -27.61641 -25.59140 -24.63833 -21.62539 -20.16812 -19.54826 -17.20119 -16.38672 -15.81970 -15.53677 -14.84908 -14.33204 -14.01401 -13.62441 -12.98298 -12.82167 -12.20090 -12.02665 -11.63692 -11.49656 -11.10675 -11.06983 -10.68792 -10.65008 -10.28446 -10.07595 -9.82963 -9.28313 -8.91381 -8.44878 -8.23539 -7.39315 -6.03356 -4.07081 1.84668 1.98666 3.32224 3.36974 3.39450 3.48419 4.28528 4.42886 5.04065 5.17748 5.19386 5.30134 5.34624 5.46710 5.68501 5.76494 5.97210 6.04076 6.41240 6.45231 6.49231 6.73178 6.84136 6.97067 7.07435 7.23691 7.25375 7.49116 7.63859 7.76676 7.84412 7.97742 8.40337 8.95171 9.57584 11.06408 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.073711 B = 0.006292 C = 0.005966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 379.769746 B = 4449.001151 C = 4692.406538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.324 6.324 3 C 0.105 3.895 4 C -0.215 4.215 5 C -0.083 4.083 6 C -0.114 4.114 7 C -0.054 4.054 8 C -0.147 4.147 9 C -0.079 4.079 10 C 0.054 3.946 11 H 0.035 0.965 12 C -0.516 4.516 13 H 0.058 0.942 14 C 0.064 3.936 15 N -0.889 5.889 16 Si 0.892 3.108 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.277 1.277 20 C -0.057 4.057 21 H 0.051 0.949 22 H 0.093 0.907 23 H 0.051 0.949 24 H 0.119 0.881 25 H 0.116 0.884 26 H 0.120 0.880 27 H 0.057 0.943 28 H 0.075 0.925 29 H 0.261 0.739 30 H 0.068 0.932 31 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.247 -8.946 -1.156 12.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.238 6.238 3 C 0.061 3.939 4 C -0.233 4.233 5 C -0.101 4.101 6 C -0.115 4.115 7 C -0.055 4.055 8 C -0.165 4.165 9 C -0.116 4.116 10 C 0.036 3.964 11 H 0.053 0.947 12 C -0.554 4.554 13 H 0.076 0.924 14 C -0.138 4.138 15 N -0.527 5.527 16 Si 0.720 3.280 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.095 4.095 21 H 0.070 0.930 22 H 0.112 0.888 23 H 0.070 0.930 24 H 0.137 0.863 25 H 0.134 0.866 26 H 0.138 0.862 27 H 0.076 0.924 28 H 0.093 0.907 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.200 -8.943 -1.084 12.876 hybrid contribution 0.264 0.697 -0.469 0.881 sum -8.936 -8.245 -1.553 12.257 Atomic orbital electron populations 1.22936 0.79233 1.03143 1.01106 1.86007 1.20684 1.27503 1.89598 1.18712 0.92066 0.83667 0.99480 1.20947 0.99071 0.92362 1.10943 1.20447 0.93845 0.96522 0.99319 1.21372 0.93095 0.98162 0.98838 1.20827 0.97835 0.91650 0.95152 1.19791 0.90878 0.97741 1.08107 1.21366 0.88970 0.99998 1.01281 1.19362 0.92466 0.87836 0.96732 0.94675 1.21082 1.13391 0.92806 1.28146 0.92351 1.24982 0.96081 0.97644 0.95128 1.69954 1.37110 1.08241 1.37403 0.86664 0.82644 0.78576 0.80162 1.20251 1.21327 1.20224 1.21166 0.94048 0.92734 1.01550 0.93025 0.88842 0.93012 0.86276 0.86558 0.86175 0.92407 0.90681 0.92903 0.91373 0.91358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.81 101.05 0.99 1.32 16 2 O -0.32 -4.90 10.50 -19.44 -0.20 -5.11 16 3 C 0.10 1.79 6.68 -39.26 -0.26 1.53 16 4 C -0.21 -3.49 9.04 -39.48 -0.36 -3.85 16 5 C -0.08 -1.51 10.03 -39.55 -0.40 -1.90 16 6 C -0.11 -2.39 6.14 -104.17 -0.64 -3.03 16 7 C -0.05 -1.11 6.13 -104.21 -0.64 -1.75 16 8 C -0.15 -2.69 9.98 -39.38 -0.39 -3.08 16 9 C -0.08 -1.69 6.30 -26.85 -0.17 -1.86 16 10 C 0.05 1.36 3.00 -90.37 -0.27 1.09 16 11 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 12 C -0.52 -13.94 8.41 -34.44 -0.29 -14.23 16 13 H 0.06 1.54 7.66 -52.49 -0.40 1.14 16 14 C 0.06 1.74 5.33 -17.82 -0.10 1.64 16 15 N -0.89 -25.16 12.33 55.43 0.68 -24.48 16 16 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 C -0.06 -1.37 5.39 -26.84 -0.14 -1.51 16 21 H 0.05 0.49 7.65 -51.93 -0.40 0.09 16 22 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.05 0.49 7.68 -51.93 -0.40 0.10 16 24 H 0.12 1.57 6.31 -52.49 -0.33 1.23 16 25 H 0.12 1.87 8.06 -52.49 -0.42 1.45 16 26 H 0.12 2.00 8.06 -52.48 -0.42 1.57 16 27 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.07 1.58 7.79 -51.93 -0.40 1.18 16 29 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.07 1.70 7.89 -51.93 -0.41 1.29 16 31 H 0.07 1.71 7.88 -51.93 -0.41 1.30 16 LS Contribution 261.65 15.07 3.94 3.94 Total: -1.00 -28.85 261.65 -7.27 -36.11 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -4.00 Total: -0.79 kcal Atomic # 6 Polarization: -22.97 SS G_CDS: -2.67 Total: -25.64 kcal Atomic # 7 Polarization: -25.16 SS G_CDS: 0.68 Total: -24.48 kcal Atomic # 8 Polarization: -4.90 SS G_CDS: -0.20 Total: -5.11 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -28.85 -7.27 -36.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259596116.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.234 kcal (2) G-P(sol) polarization free energy of solvation -28.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds