Wall clock time and date at job start Mon Mar 30 2020 02:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38750 * 120.09529 * 359.72182 * 3 2 1 5 5 C 1.38001 * 119.87641 * 179.83678 * 4 3 2 6 6 C 1.38552 * 120.29162 * 0.38323 * 5 4 3 7 7 C 1.38254 * 119.93787 * 359.86707 * 6 5 4 8 8 C 1.38422 * 119.90385 * 359.93845 * 7 6 5 9 9 C 1.51379 * 109.75506 * 179.97438 * 7 6 5 10 10 C 1.54341 * 105.17281 * 17.19233 * 9 7 6 11 11 H 1.09000 * 110.98758 * 91.93620 * 10 9 7 12 12 C 1.50696 * 110.82337 * 215.41219 * 10 9 7 13 13 H 1.07999 * 120.00105 * 354.42452 * 12 10 9 14 14 C 1.37876 * 120.00070 * 174.43110 * 12 10 9 15 15 N 1.31507 * 120.00087 * 359.97438 * 14 12 10 16 16 Si 1.86805 * 119.99967 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.47096 * 59.99456 * 16 14 12 18 18 H 1.48497 * 109.46977 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46713 * 299.99780 * 16 14 12 20 20 C 1.51381 * 130.31732 * 179.83283 * 6 5 4 21 21 H 1.08998 * 109.47043 * 59.99803 * 1 2 3 22 22 H 1.08996 * 109.46732 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47144 * 300.00205 * 1 2 3 24 24 H 1.07996 * 120.05781 * 0.02619 * 4 3 2 25 25 H 1.08000 * 119.85068 * 180.23158 * 5 4 3 26 26 H 1.08003 * 119.91051 * 179.97438 * 8 7 6 27 27 H 1.08999 * 110.30416 * 136.12156 * 9 7 6 28 28 H 1.09003 * 110.29914 * 258.26936 * 9 7 6 29 29 H 0.97002 * 120.00534 * 180.02562 * 15 14 12 30 30 H 1.09006 * 110.29931 * 281.74490 * 20 6 5 31 31 H 1.08995 * 110.30735 * 43.80064 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2921 2.3758 -0.0058 5 6 1.9232 3.6031 -0.0024 6 6 3.3067 3.6774 -0.0012 7 6 4.0600 2.5181 -0.0006 8 6 3.4299 1.2857 0.0000 9 6 5.5335 2.8654 0.0001 10 6 5.6000 4.3432 0.4402 11 1 5.7196 4.4238 1.5207 12 6 6.7125 5.0656 -0.2750 13 1 7.3870 4.5181 -0.9166 14 6 6.8693 6.4254 -0.1102 15 7 6.0477 7.0922 0.6708 16 14 8.2487 7.3208 -0.9963 17 1 8.0857 7.1535 -2.4627 18 1 8.2008 8.7652 -0.6549 19 1 9.5559 6.7553 -0.5759 20 6 4.2228 4.8826 -0.0009 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 0.2135 2.3221 -0.0099 25 1 1.3360 4.5095 -0.0031 26 1 4.0182 0.3800 0.0001 27 1 6.0703 2.2350 0.7091 28 1 5.9497 2.7496 -1.0006 29 1 6.1577 8.0490 0.7865 30 1 4.2869 5.3091 -1.0020 31 1 3.8637 5.6306 0.7059 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259596116.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:39 Heat of formation + Delta-G solvation = -40.662172 kcal Electronic energy + Delta-G solvation = -14107.632598 eV Core-core repulsion = 11738.971973 eV Total energy + Delta-G solvation = -2368.660626 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.28040 -39.42655 -36.23741 -33.98889 -32.28711 -29.87810 -28.81918 -27.04954 -26.49056 -23.18059 -21.56077 -21.36093 -18.55971 -18.33247 -17.19123 -16.62816 -16.53329 -16.00561 -15.61228 -15.21151 -14.31855 -14.07132 -13.94604 -13.54354 -13.40510 -12.98761 -12.75606 -12.60950 -12.45733 -12.23158 -12.06391 -11.52849 -11.43691 -11.18594 -10.91062 -10.52874 -9.67842 -8.86134 -8.12614 -6.23638 0.42950 0.53851 1.44193 1.45645 1.53263 2.37942 2.45180 2.83372 3.18322 3.79927 3.97269 4.08501 4.28922 4.44471 4.45115 4.49000 4.60081 4.63800 4.75135 4.84394 4.96676 5.15716 5.16712 5.31246 5.38605 5.49085 5.59569 5.75677 5.88457 5.91055 5.97669 6.34191 6.53033 6.85580 7.44502 8.96808 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.073711 B = 0.006292 C = 0.005966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 379.769746 B = 4449.001151 C = 4692.406538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.333 6.333 3 C 0.114 3.886 4 C -0.204 4.204 5 C -0.082 4.082 6 C -0.146 4.146 7 C -0.066 4.066 8 C -0.155 4.155 9 C -0.070 4.070 10 C 0.044 3.956 11 H 0.004 0.996 12 C -0.535 4.535 13 H 0.060 0.940 14 C 0.014 3.986 15 N -0.919 5.919 16 Si 0.957 3.043 17 H -0.270 1.270 18 H -0.285 1.285 19 H -0.270 1.270 20 C -0.042 4.042 21 H 0.064 0.936 22 H 0.122 0.878 23 H 0.063 0.937 24 H 0.158 0.842 25 H 0.134 0.866 26 H 0.135 0.865 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.262 0.738 30 H 0.045 0.955 31 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.656 -10.393 -1.811 14.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.248 6.248 3 C 0.069 3.931 4 C -0.222 4.222 5 C -0.100 4.100 6 C -0.147 4.147 7 C -0.067 4.067 8 C -0.174 4.174 9 C -0.107 4.107 10 C 0.025 3.975 11 H 0.022 0.978 12 C -0.573 4.573 13 H 0.078 0.922 14 C -0.185 4.185 15 N -0.558 5.558 16 Si 0.782 3.218 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.195 1.195 20 C -0.080 4.080 21 H 0.082 0.918 22 H 0.140 0.860 23 H 0.082 0.918 24 H 0.176 0.824 25 H 0.151 0.849 26 H 0.153 0.847 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -10.618 -10.412 -1.742 14.972 hybrid contribution 0.564 1.034 -0.235 1.200 sum -10.054 -9.378 -1.976 13.890 Atomic orbital electron populations 1.23350 0.76444 1.05579 1.02247 1.86015 1.23485 1.26251 1.89008 1.18804 0.91824 0.84839 0.97620 1.21292 1.00964 0.91034 1.08937 1.20675 0.92666 0.98321 0.98334 1.21161 0.94410 0.96718 1.02366 1.20679 0.96832 0.92507 0.96642 1.19917 0.92049 0.97275 1.08110 1.21156 0.90612 0.97611 1.01342 1.19319 0.92843 0.90603 0.94702 0.97770 1.21442 1.14045 0.93464 1.28309 0.92215 1.25784 0.98421 0.98453 0.95846 1.70089 1.38672 1.08390 1.38650 0.85624 0.79756 0.77257 0.79113 1.19560 1.21007 1.19456 1.20778 0.94449 0.93471 0.99292 0.91762 0.86030 0.91837 0.82431 0.84853 0.84716 0.91253 0.90752 0.92938 0.93692 0.93878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.40 16 2 O -0.33 -8.85 10.50 -92.48 -0.97 -9.82 16 3 C 0.11 3.57 6.68 22.48 0.15 3.72 16 4 C -0.20 -5.95 9.04 22.34 0.20 -5.75 16 5 C -0.08 -2.84 10.03 22.29 0.22 -2.62 16 6 C -0.15 -6.18 6.14 -19.57 -0.12 -6.30 16 7 C -0.07 -2.70 6.13 -19.60 -0.12 -2.82 16 8 C -0.15 -5.43 9.98 22.40 0.22 -5.21 16 9 C -0.07 -3.06 6.30 30.52 0.19 -2.87 16 10 C 0.04 2.29 3.00 -10.63 -0.03 2.26 16 11 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 12 C -0.53 -29.79 8.41 25.60 0.22 -29.58 16 13 H 0.06 3.22 7.66 -2.91 -0.02 3.19 16 14 C 0.01 0.79 5.33 84.66 0.45 1.24 16 15 N -0.92 -53.77 12.33 21.45 0.26 -53.51 16 16 Si 0.96 43.61 29.54 68.60 2.03 45.63 16 17 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 18 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 19 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 20 C -0.04 -2.10 5.39 30.52 0.16 -1.94 16 21 H 0.06 0.91 7.65 -2.39 -0.02 0.89 16 22 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 23 H 0.06 0.91 7.68 -2.39 -0.02 0.89 16 24 H 0.16 3.35 6.31 -2.91 -0.02 3.33 16 25 H 0.13 4.07 8.06 -2.91 -0.02 4.05 16 26 H 0.13 4.22 8.06 -2.91 -0.02 4.20 16 27 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 28 H 0.07 3.19 7.79 -2.39 -0.02 3.17 16 29 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 30 H 0.04 2.37 7.89 -2.38 -0.02 2.35 16 31 H 0.04 2.28 7.88 -2.39 -0.02 2.26 16 Total: -1.00 -63.35 261.65 5.09 -58.26 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: 1.11 Total: 7.92 kcal Atomic # 6 Polarization: -51.13 SS G_CDS: 2.66 Total: -48.47 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: 0.26 Total: -53.51 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: -0.97 Total: -9.82 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Total: -63.35 5.09 -58.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259596116.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.595 kcal (2) G-P(sol) polarization free energy of solvation -63.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds