Wall clock time and date at job start Mon Mar 30 2020 02:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86794 * 119.99703 * 2 1 4 4 H 1.48506 * 109.46917 * 239.99649 * 3 2 1 5 5 H 1.48499 * 109.47315 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47315 * 119.99343 * 3 2 1 7 7 C 1.37877 * 120.00288 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00239 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99531 * 0.02562 * 7 2 1 10 10 H 1.08992 * 110.38246 * 57.78747 * 9 7 2 11 11 C 1.54448 * 110.33115 * 180.02562 * 9 7 2 12 12 C 1.54437 * 101.99234 * 93.15867 * 11 9 7 13 13 C 1.51356 * 105.00662 * 25.72812 * 12 11 9 14 14 C 1.40179 * 141.89111 * 163.11337 * 13 12 11 15 15 C 1.50694 * 125.87832 * 359.95050 * 14 13 12 16 16 C 1.53004 * 117.50085 * 188.62608 * 15 14 13 17 17 C 1.52996 * 117.50095 * 120.00255 * 15 14 13 18 18 N 1.30733 * 108.23785 * 179.97438 * 14 13 12 19 19 N 1.39994 * 108.21921 * 359.97438 * 18 14 13 20 20 H 0.97007 * 126.03478 * 179.97438 * 19 18 14 21 21 C 1.35135 * 110.25240 * 343.05847 * 13 12 11 22 22 H 0.97001 * 120.00004 * 0.02562 * 1 2 3 23 23 H 1.09000 * 110.92739 * 334.98011 * 11 9 7 24 24 H 1.08996 * 110.92243 * 211.33241 * 11 9 7 25 25 H 1.08997 * 110.33016 * 144.60782 * 12 11 9 26 26 H 1.08999 * 110.33373 * 266.83972 * 12 11 9 27 27 H 1.09010 * 115.55148 * 334.32586 * 15 14 13 28 28 H 1.09004 * 117.49428 * 359.97438 * 16 15 14 29 29 H 1.08997 * 117.50400 * 145.01589 * 16 15 14 30 30 H 1.09005 * 117.49741 * 214.97965 * 17 15 14 31 31 H 1.08997 * 117.49893 * 359.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1027 1.6966 1.2126 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.5900 -2.5557 -0.8641 11 6 2.2370 -3.6880 0.0018 12 6 2.3766 -3.9875 1.5104 13 6 1.0901 -3.4858 2.1303 14 6 0.3138 -3.5856 3.2932 15 6 0.6437 -4.4159 4.5067 16 6 -0.4317 -4.5461 5.5874 17 6 0.8069 -3.6841 5.8403 18 7 -0.7459 -2.8348 3.1434 19 7 -0.6802 -2.2316 1.8818 20 1 -1.3351 -1.6229 1.5055 21 6 0.4569 -2.6478 1.2800 22 1 -0.4850 0.8401 -0.0004 23 1 3.1960 -3.3990 -0.4281 24 1 1.8164 -4.5430 -0.5275 25 1 2.4836 -5.0596 1.6754 26 1 3.2308 -3.4525 1.9253 27 1 1.2825 -5.2804 4.3254 28 1 -1.3776 -4.0307 5.4206 29 1 -0.5005 -5.4961 6.1171 30 1 1.5530 -4.0672 6.5366 31 1 0.6761 -2.6020 5.8399 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259611147.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:48 Heat of formation + Delta-G solvation = 89.679707 kcal Electronic energy + Delta-G solvation = -14561.844352 eV Core-core repulsion = 12231.128526 eV Total energy + Delta-G solvation = -2330.715827 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.48353 -36.76665 -35.33187 -32.54407 -30.04895 -27.57542 -26.76692 -23.88376 -23.21512 -22.04184 -20.12234 -18.52293 -18.37894 -16.89442 -15.86456 -14.91834 -14.56359 -14.15710 -13.95321 -13.00307 -12.41405 -12.11303 -11.91166 -11.49550 -11.25505 -11.18531 -11.05178 -10.69015 -10.61764 -10.45879 -10.34947 -10.01701 -9.59107 -9.42892 -9.31507 -8.60372 -8.05123 -7.08269 -6.26334 -4.29109 3.01735 3.23050 3.27495 3.30428 3.69755 3.90890 4.29899 4.42168 5.02335 5.12837 5.24849 5.39006 5.61844 5.79295 5.90080 5.98791 6.09256 6.10866 6.36744 6.46758 6.52817 6.56587 6.66799 6.93822 7.01360 7.11977 7.27137 7.60080 7.70770 7.78625 8.12318 8.57386 8.75822 8.89510 9.37007 10.83568 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.033377 B = 0.009458 C = 0.008666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.709451 B = 2959.766459 C = 3230.082133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.062 3.938 3 Si 0.901 3.099 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.501 4.501 8 H 0.066 0.934 9 C 0.103 3.897 10 H 0.039 0.961 11 C -0.111 4.111 12 C -0.022 4.022 13 C -0.308 4.308 14 C 0.113 3.887 15 C -0.067 4.067 16 C -0.172 4.172 17 C -0.169 4.169 18 N -0.331 5.331 19 N -0.443 5.443 20 H 0.438 0.562 21 C 0.155 3.845 22 H 0.265 0.735 23 H 0.069 0.931 24 H 0.051 0.949 25 H 0.045 0.955 26 H 0.058 0.942 27 H 0.115 0.885 28 H 0.099 0.901 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.580 -6.579 5.048 8.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.140 4.140 3 Si 0.728 3.272 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.539 4.539 8 H 0.084 0.916 9 C 0.083 3.917 10 H 0.057 0.943 11 C -0.149 4.149 12 C -0.061 4.061 13 C -0.319 4.319 14 C -0.051 4.051 15 C -0.087 4.087 16 C -0.210 4.210 17 C -0.207 4.207 18 N -0.155 5.155 19 N -0.148 5.148 20 H 0.283 0.717 21 C 0.022 3.978 22 H 0.074 0.926 23 H 0.088 0.912 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.076 0.924 27 H 0.133 0.867 28 H 0.118 0.882 29 H 0.110 0.890 30 H 0.112 0.888 31 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.319 -6.033 5.586 8.228 hybrid contribution 0.714 1.222 -0.430 1.479 sum 1.033 -4.811 5.156 7.127 Atomic orbital electron populations 1.69754 1.06257 1.27332 1.50045 1.25010 0.94977 0.99613 0.94375 0.86495 0.79567 0.82306 0.78797 1.19926 1.21236 1.20163 1.21101 0.93130 0.89353 1.50304 0.91590 1.18157 0.91215 0.93786 0.88580 0.94300 1.22393 0.99927 0.97455 0.95143 1.20125 0.93513 0.97931 0.94486 1.20595 1.02665 1.12093 0.96558 1.20510 0.93032 0.97514 0.94018 1.20204 1.02768 0.99647 0.86104 1.22927 0.94540 1.01302 1.02215 1.22939 1.00289 0.99263 0.98235 1.76962 1.22971 1.15918 0.99623 1.45698 1.19515 1.38235 1.11384 0.71652 1.22731 0.85530 0.90100 0.99418 0.92553 0.91208 0.93059 0.93635 0.92379 0.86691 0.88236 0.89048 0.88827 0.88864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.07 11.83 55.43 0.66 -23.41 16 2 C 0.06 1.65 5.34 -17.82 -0.10 1.56 16 3 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.50 -13.15 8.50 -34.44 -0.29 -13.44 16 8 H 0.07 1.69 7.58 -52.49 -0.40 1.29 16 9 C 0.10 2.51 2.78 -91.85 -0.26 2.25 16 10 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 11 C -0.11 -2.23 6.63 -25.22 -0.17 -2.40 16 12 C -0.02 -0.44 6.78 -26.81 -0.18 -0.62 16 13 C -0.31 -6.99 6.83 -104.68 -0.72 -7.71 16 14 C 0.11 2.45 6.76 -82.33 -0.56 1.89 16 15 C -0.07 -1.13 6.27 -91.77 -0.58 -1.71 16 16 C -0.17 -2.51 10.14 -26.73 -0.27 -2.78 16 17 C -0.17 -2.51 10.23 -26.73 -0.27 -2.78 16 18 N -0.33 -7.60 12.27 33.71 0.41 -7.19 16 19 N -0.44 -10.68 7.14 33.65 0.24 -10.44 16 20 H 0.44 10.32 8.34 -182.67 -1.52 8.80 16 21 C 0.15 3.80 6.57 -81.90 -0.54 3.26 16 22 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 23 H 0.07 1.32 7.75 -51.93 -0.40 0.92 16 24 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 25 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.12 1.71 8.14 -51.92 -0.42 1.29 16 28 H 0.10 1.59 7.89 -51.93 -0.41 1.18 16 29 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 LS Contribution 263.92 15.07 3.98 3.98 Total: -1.00 -28.24 263.92 -8.90 -37.15 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -5.25 Total: 6.57 kcal Atomic # 6 Polarization: -18.55 SS G_CDS: -3.92 Total: -22.47 kcal Atomic # 7 Polarization: -42.35 SS G_CDS: 1.31 Total: -41.04 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -28.24 -8.90 -37.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259611147.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.829 kcal (2) G-P(sol) polarization free energy of solvation -28.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds