Wall clock time and date at job start Mon Mar 30 2020 02:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86794 * 119.99703 * 2 1 4 4 H 1.48506 * 109.46917 * 239.99649 * 3 2 1 5 5 H 1.48499 * 109.47315 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47315 * 119.99343 * 3 2 1 7 7 C 1.37877 * 120.00288 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00239 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99531 * 0.02562 * 7 2 1 10 10 H 1.08992 * 110.38246 * 57.78747 * 9 7 2 11 11 C 1.54448 * 110.33115 * 180.02562 * 9 7 2 12 12 C 1.54437 * 101.99234 * 93.15867 * 11 9 7 13 13 C 1.51356 * 105.00662 * 25.72812 * 12 11 9 14 14 C 1.40179 * 141.89111 * 163.11337 * 13 12 11 15 15 C 1.50694 * 125.87832 * 359.95050 * 14 13 12 16 16 C 1.53004 * 117.50085 * 188.62608 * 15 14 13 17 17 C 1.52996 * 117.50095 * 120.00255 * 15 14 13 18 18 N 1.30733 * 108.23785 * 179.97438 * 14 13 12 19 19 N 1.39994 * 108.21921 * 359.97438 * 18 14 13 20 20 H 0.97007 * 126.03478 * 179.97438 * 19 18 14 21 21 C 1.35135 * 110.25240 * 343.05847 * 13 12 11 22 22 H 0.97001 * 120.00004 * 0.02562 * 1 2 3 23 23 H 1.09000 * 110.92739 * 334.98011 * 11 9 7 24 24 H 1.08996 * 110.92243 * 211.33241 * 11 9 7 25 25 H 1.08997 * 110.33016 * 144.60782 * 12 11 9 26 26 H 1.08999 * 110.33373 * 266.83972 * 12 11 9 27 27 H 1.09010 * 115.55148 * 334.32586 * 15 14 13 28 28 H 1.09004 * 117.49428 * 359.97438 * 16 15 14 29 29 H 1.08997 * 117.50400 * 145.01589 * 16 15 14 30 30 H 1.09005 * 117.49741 * 214.97965 * 17 15 14 31 31 H 1.08997 * 117.49893 * 359.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1027 1.6966 1.2126 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.5900 -2.5557 -0.8641 11 6 2.2370 -3.6880 0.0018 12 6 2.3766 -3.9875 1.5104 13 6 1.0901 -3.4858 2.1303 14 6 0.3138 -3.5856 3.2932 15 6 0.6437 -4.4159 4.5067 16 6 -0.4317 -4.5461 5.5874 17 6 0.8069 -3.6841 5.8403 18 7 -0.7459 -2.8348 3.1434 19 7 -0.6802 -2.2316 1.8818 20 1 -1.3351 -1.6229 1.5055 21 6 0.4569 -2.6478 1.2800 22 1 -0.4850 0.8401 -0.0004 23 1 3.1960 -3.3990 -0.4281 24 1 1.8164 -4.5430 -0.5275 25 1 2.4836 -5.0596 1.6754 26 1 3.2308 -3.4525 1.9253 27 1 1.2825 -5.2804 4.3254 28 1 -1.3776 -4.0307 5.4206 29 1 -0.5005 -5.4961 6.1171 30 1 1.5530 -4.0672 6.5366 31 1 0.6761 -2.6020 5.8399 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259611147.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:48 Heat of formation + Delta-G solvation = 73.917771 kcal Electronic energy + Delta-G solvation = -14562.527841 eV Core-core repulsion = 12231.128526 eV Total energy + Delta-G solvation = -2331.399315 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.20892 -38.10448 -37.00025 -34.48710 -31.77203 -29.41299 -28.49042 -25.77086 -24.67378 -23.17847 -21.81594 -20.27490 -19.92211 -18.80283 -17.62069 -16.49643 -16.27173 -15.86126 -15.27387 -14.71786 -14.28035 -13.83626 -13.54578 -13.03881 -12.96027 -12.82079 -12.44856 -12.34271 -12.29287 -12.06843 -11.86262 -11.50607 -11.25978 -11.17476 -10.97527 -10.60240 -9.75853 -8.85476 -8.25306 -6.34982 1.28020 1.39262 1.40093 1.46308 2.00616 2.16206 2.37498 3.07896 3.15428 3.70941 4.00359 4.06753 4.19287 4.29672 4.34951 4.55496 4.78272 4.81594 4.87445 4.98734 5.12095 5.15966 5.31171 5.34301 5.37652 5.42766 5.55762 5.70893 5.80705 6.11252 6.17454 6.65554 6.84920 7.11503 7.33337 8.82155 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.033377 B = 0.009458 C = 0.008666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.709451 B = 2959.766459 C = 3230.082133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.015 3.985 3 Si 0.958 3.042 4 H -0.263 1.263 5 H -0.288 1.288 6 H -0.279 1.279 7 C -0.517 4.517 8 H 0.068 0.932 9 C 0.094 3.906 10 H 0.011 0.989 11 C -0.103 4.103 12 C -0.017 4.017 13 C -0.315 4.315 14 C 0.112 3.888 15 C -0.091 4.091 16 C -0.158 4.158 17 C -0.159 4.159 18 N -0.347 5.347 19 N -0.459 5.459 20 H 0.433 0.567 21 C 0.122 3.878 22 H 0.263 0.737 23 H 0.080 0.920 24 H 0.070 0.930 25 H 0.079 0.921 26 H 0.059 0.941 27 H 0.141 0.859 28 H 0.078 0.922 29 H 0.128 0.872 30 H 0.129 0.871 31 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.046 -7.894 6.314 10.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.185 4.185 3 Si 0.783 3.217 4 H -0.187 1.187 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.555 4.555 8 H 0.086 0.914 9 C 0.074 3.926 10 H 0.029 0.971 11 C -0.141 4.141 12 C -0.055 4.055 13 C -0.326 4.326 14 C -0.053 4.053 15 C -0.111 4.111 16 C -0.195 4.195 17 C -0.197 4.197 18 N -0.171 5.171 19 N -0.164 5.164 20 H 0.277 0.723 21 C -0.010 4.010 22 H 0.072 0.928 23 H 0.099 0.901 24 H 0.089 0.911 25 H 0.098 0.902 26 H 0.077 0.923 27 H 0.159 0.841 28 H 0.097 0.903 29 H 0.146 0.854 30 H 0.147 0.853 31 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.795 -7.358 6.841 10.206 hybrid contribution 0.211 1.611 -0.807 1.814 sum 2.006 -5.746 6.034 8.571 Atomic orbital electron populations 1.69870 1.07241 1.27681 1.50668 1.25757 0.95787 1.02581 0.94375 0.85602 0.78394 0.78783 0.78879 1.18718 1.21338 1.20423 1.21430 0.93424 0.90504 1.50146 0.91386 1.18225 0.91648 0.95073 0.87662 0.97100 1.22375 0.99303 0.96307 0.96085 1.20168 0.91875 0.99931 0.93531 1.21123 1.03515 1.11390 0.96593 1.21278 0.91852 0.96816 0.95348 1.20464 1.05125 1.00419 0.85046 1.22994 0.93188 1.02602 1.00707 1.23007 1.01384 0.98050 0.97245 1.76942 1.24199 1.16740 0.99238 1.45765 1.19744 1.38832 1.12014 0.72263 1.22925 0.86365 0.91551 1.00167 0.92790 0.90107 0.91100 0.90243 0.92291 0.84100 0.90303 0.85394 0.85253 0.91256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.53 11.83 21.45 0.25 -50.28 16 2 C 0.01 0.78 5.34 84.65 0.45 1.23 16 3 Si 0.96 42.97 29.54 68.60 2.03 44.99 16 4 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 5 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16 6 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 7 C -0.52 -27.35 8.50 25.60 0.22 -27.13 16 8 H 0.07 3.47 7.58 -2.91 -0.02 3.45 16 9 C 0.09 4.65 2.78 -11.59 -0.03 4.61 16 10 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 11 C -0.10 -3.97 6.63 31.57 0.21 -3.76 16 12 C -0.02 -0.62 6.78 30.54 0.21 -0.42 16 13 C -0.32 -14.03 6.83 -19.90 -0.14 -14.17 16 14 C 0.11 4.71 6.76 43.19 0.29 5.00 16 15 C -0.09 -2.81 6.27 -11.54 -0.07 -2.88 16 16 C -0.16 -4.12 10.14 30.60 0.31 -3.81 16 17 C -0.16 -4.24 10.23 30.59 0.31 -3.93 16 18 N -0.35 -16.15 12.27 -47.25 -0.58 -16.73 16 19 N -0.46 -22.80 7.14 -47.46 -0.34 -23.14 16 20 H 0.43 21.47 8.34 -213.38 -1.78 19.69 16 21 C 0.12 6.06 6.57 41.52 0.27 6.34 16 22 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 23 H 0.08 2.91 7.75 -2.39 -0.02 2.89 16 24 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 25 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 26 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 27 H 0.14 3.61 8.14 -2.38 -0.02 3.59 16 28 H 0.08 2.41 7.89 -2.38 -0.02 2.39 16 29 H 0.13 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.13 2.54 8.14 -2.38 -0.02 2.52 16 31 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -61.39 263.92 2.75 -58.64 By element: Atomic # 1 Polarization: 26.06 SS G_CDS: -0.64 Total: 25.42 kcal Atomic # 6 Polarization: -40.93 SS G_CDS: 2.03 Total: -38.90 kcal Atomic # 7 Polarization: -89.48 SS G_CDS: -0.66 Total: -90.15 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 44.99 kcal Total: -61.39 2.75 -58.64 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259611147.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.556 kcal (2) G-P(sol) polarization free energy of solvation -61.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds