Wall clock time and date at job start Mon Mar 30 2020 02:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 120.00173 * 2 1 4 4 H 1.48497 * 109.47139 * 239.99922 * 3 2 1 5 5 H 1.48497 * 109.46757 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47172 * 119.99754 * 3 2 1 7 7 C 1.37874 * 120.00093 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00020 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00077 * 359.97438 * 7 2 1 10 10 H 1.08999 * 110.38447 * 299.23865 * 9 7 2 11 11 C 1.54442 * 110.34094 * 177.02538 * 9 7 2 12 12 C 1.54591 * 101.92323 * 215.21591 * 11 9 7 13 13 C 1.51365 * 104.92863 * 26.02870 * 12 11 9 14 14 C 1.40175 * 141.89169 * 163.04953 * 13 12 11 15 15 C 1.50697 * 125.87810 * 359.64800 * 14 13 12 16 16 C 1.52999 * 117.49840 * 188.74712 * 15 14 13 17 17 C 1.53003 * 117.49773 * 120.08885 * 15 14 13 18 18 N 1.30730 * 108.23798 * 179.67125 * 14 13 12 19 19 N 1.39996 * 108.21862 * 359.97438 * 18 14 13 20 20 H 0.96996 * 126.03145 * 179.97438 * 19 18 14 21 21 C 1.35132 * 110.24749 * 342.72060 * 13 12 11 22 22 H 0.96998 * 119.99591 * 0.02562 * 1 2 3 23 23 H 1.08997 * 110.92296 * 333.58585 * 11 9 7 24 24 H 1.09006 * 110.92373 * 97.19548 * 11 9 7 25 25 H 1.08993 * 110.38082 * 267.16430 * 12 11 9 26 26 H 1.09003 * 110.36629 * 144.87844 * 12 11 9 27 27 H 1.09001 * 115.55457 * 334.41130 * 15 14 13 28 28 H 1.09008 * 117.50004 * 0.02562 * 16 15 14 29 29 H 1.08995 * 117.50060 * 145.02124 * 16 15 14 30 30 H 1.09000 * 117.49374 * 214.97593 * 17 15 14 31 31 H 1.08996 * 117.49793 * 359.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 1 0.6294 -2.5778 0.8936 11 6 2.2351 -3.6871 -0.0730 12 6 1.4482 -4.6997 -0.9364 13 6 0.5137 -3.8541 -1.7747 14 6 -0.2908 -3.9058 -2.9214 15 6 -0.4639 -5.0987 -3.8258 16 6 -1.2244 -4.8871 -5.1364 17 6 -1.8769 -5.6623 -3.9891 18 7 -0.8647 -2.7408 -3.0714 19 7 -0.4460 -1.9089 -2.0261 20 1 -0.7149 -0.9872 -1.8878 21 6 0.4004 -2.6164 -1.2443 22 1 -0.4849 0.8401 -0.0004 23 1 3.1641 -3.3929 -0.5613 24 1 2.4308 -4.0935 0.9193 25 1 0.8784 -5.3779 -0.3013 26 1 2.1283 -5.2611 -1.5770 27 1 0.3645 -5.8070 -3.8335 28 1 -1.5992 -3.8849 -5.3447 29 1 -0.8967 -5.4565 -6.0061 30 1 -1.9780 -6.7414 -4.1045 31 1 -2.6812 -5.1705 -3.4420 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259611148.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:50 Heat of formation + Delta-G solvation = 89.310484 kcal Electronic energy + Delta-G solvation = -14516.385344 eV Core-core repulsion = 12185.653507 eV Total energy + Delta-G solvation = -2330.731837 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.47420 -36.76525 -35.26387 -32.77455 -29.92244 -27.73738 -26.82245 -23.75057 -23.14827 -22.05699 -20.20120 -18.54455 -18.36104 -16.73329 -15.91694 -15.02460 -14.66471 -14.24065 -13.76745 -12.98198 -12.28979 -12.22030 -11.95755 -11.57912 -11.43976 -11.22570 -11.06844 -10.80998 -10.65501 -10.44404 -10.32604 -9.92229 -9.64880 -9.44351 -9.28373 -8.68605 -8.02366 -7.09769 -6.32486 -4.37295 3.04719 3.19230 3.24340 3.27125 3.66801 3.97981 4.25159 4.41271 4.98294 5.06564 5.24281 5.37735 5.62305 5.79481 5.88716 5.93232 6.07364 6.09999 6.35449 6.45605 6.50230 6.56718 6.65601 6.85838 6.99752 7.10155 7.30037 7.55317 7.67187 7.76450 8.08233 8.60195 8.75413 8.95017 9.30235 10.77326 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.040945 B = 0.008867 C = 0.007783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.676212 B = 3157.195187 C = 3596.613793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.057 3.943 3 Si 0.900 3.100 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.502 4.502 8 H 0.066 0.934 9 C 0.096 3.904 10 H 0.052 0.948 11 C -0.109 4.109 12 C -0.030 4.030 13 C -0.319 4.319 14 C 0.112 3.888 15 C -0.067 4.067 16 C -0.172 4.172 17 C -0.169 4.169 18 N -0.333 5.333 19 N -0.432 5.432 20 H 0.440 0.560 21 C 0.161 3.839 22 H 0.267 0.733 23 H 0.064 0.936 24 H 0.060 0.940 25 H 0.053 0.947 26 H 0.049 0.951 27 H 0.115 0.885 28 H 0.100 0.900 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.096 -7.603 -3.951 8.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.143 4.143 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.539 4.539 8 H 0.084 0.916 9 C 0.076 3.924 10 H 0.070 0.930 11 C -0.147 4.147 12 C -0.068 4.068 13 C -0.331 4.331 14 C -0.052 4.052 15 C -0.087 4.087 16 C -0.210 4.210 17 C -0.207 4.207 18 N -0.157 5.157 19 N -0.141 5.141 20 H 0.290 0.710 21 C 0.028 3.972 22 H 0.077 0.923 23 H 0.083 0.917 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.133 0.867 28 H 0.118 0.882 29 H 0.109 0.891 30 H 0.111 0.889 31 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.053 -6.735 -4.670 8.263 hybrid contribution 0.723 1.081 0.514 1.398 sum -0.330 -5.654 -4.156 7.025 Atomic orbital electron populations 1.69697 1.06127 1.27415 1.51036 1.25062 0.95029 0.99669 0.94524 0.86495 0.79608 0.82236 0.78890 1.20144 1.21083 1.19868 1.21325 0.93433 0.89969 1.49213 0.91602 1.18228 0.91131 0.93800 0.89199 0.93003 1.22449 0.98506 0.95404 0.98370 1.20255 0.95052 0.96042 0.95457 1.20683 1.12159 0.98553 1.01685 1.20487 0.97066 0.92818 0.94878 1.20204 0.95596 0.96073 0.96821 1.22939 1.04245 1.02158 0.91650 1.22946 0.95836 0.99259 1.02708 1.76972 1.25567 1.01972 1.11220 1.46168 1.35692 1.13707 1.18545 0.70962 1.22609 0.89570 0.89715 0.95330 0.92342 0.91677 0.92101 0.92811 0.93224 0.86736 0.88200 0.89050 0.88863 0.88884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.90 10.61 55.43 0.59 -23.31 16 2 C 0.06 1.48 5.32 -17.82 -0.09 1.39 16 3 Si 0.90 20.33 29.54 -169.99 -5.02 15.31 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.50 -13.04 8.53 -34.44 -0.29 -13.33 16 8 H 0.07 1.67 7.63 -52.48 -0.40 1.27 16 9 C 0.10 2.35 2.83 -91.86 -0.26 2.09 16 10 H 0.05 1.34 8.14 -51.93 -0.42 0.92 16 11 C -0.11 -2.19 6.62 -25.14 -0.17 -2.36 16 12 C -0.03 -0.56 6.79 -26.72 -0.18 -0.75 16 13 C -0.32 -7.19 6.83 -104.67 -0.71 -7.91 16 14 C 0.11 2.40 6.76 -82.34 -0.56 1.85 16 15 C -0.07 -1.12 6.27 -91.77 -0.57 -1.69 16 16 C -0.17 -2.51 10.14 -26.69 -0.27 -2.78 16 17 C -0.17 -2.42 10.24 -26.69 -0.27 -2.69 16 18 N -0.33 -7.76 12.27 33.71 0.41 -7.35 16 19 N -0.43 -10.76 7.16 33.65 0.24 -10.52 16 20 H 0.44 11.03 7.06 -182.68 -1.29 9.74 16 21 C 0.16 4.01 6.60 -81.90 -0.54 3.47 16 22 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 23 H 0.06 1.30 7.79 -51.93 -0.40 0.89 16 24 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.11 1.70 8.14 -51.93 -0.42 1.28 16 28 H 0.10 1.61 7.89 -51.92 -0.41 1.20 16 29 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 LS Contribution 261.64 15.07 3.94 3.94 Total: -1.00 -27.78 261.64 -8.78 -36.56 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -5.02 Total: 8.08 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: -3.93 Total: -22.72 kcal Atomic # 7 Polarization: -42.43 SS G_CDS: 1.24 Total: -41.19 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -27.78 -8.78 -36.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259611148.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.874 kcal (2) G-P(sol) polarization free energy of solvation -27.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds