Wall clock time and date at job start Mon Mar 30 2020 02:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 120.00173 * 2 1 4 4 H 1.48497 * 109.47139 * 239.99922 * 3 2 1 5 5 H 1.48497 * 109.46757 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47172 * 119.99754 * 3 2 1 7 7 C 1.37874 * 120.00093 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00020 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00077 * 359.97438 * 7 2 1 10 10 H 1.08999 * 110.38447 * 299.23865 * 9 7 2 11 11 C 1.54442 * 110.34094 * 177.02538 * 9 7 2 12 12 C 1.54591 * 101.92323 * 215.21591 * 11 9 7 13 13 C 1.51365 * 104.92863 * 26.02870 * 12 11 9 14 14 C 1.40175 * 141.89169 * 163.04953 * 13 12 11 15 15 C 1.50697 * 125.87810 * 359.64800 * 14 13 12 16 16 C 1.52999 * 117.49840 * 188.74712 * 15 14 13 17 17 C 1.53003 * 117.49773 * 120.08885 * 15 14 13 18 18 N 1.30730 * 108.23798 * 179.67125 * 14 13 12 19 19 N 1.39996 * 108.21862 * 359.97438 * 18 14 13 20 20 H 0.96996 * 126.03145 * 179.97438 * 19 18 14 21 21 C 1.35132 * 110.24749 * 342.72060 * 13 12 11 22 22 H 0.96998 * 119.99591 * 0.02562 * 1 2 3 23 23 H 1.08997 * 110.92296 * 333.58585 * 11 9 7 24 24 H 1.09006 * 110.92373 * 97.19548 * 11 9 7 25 25 H 1.08993 * 110.38082 * 267.16430 * 12 11 9 26 26 H 1.09003 * 110.36629 * 144.87844 * 12 11 9 27 27 H 1.09001 * 115.55457 * 334.41130 * 15 14 13 28 28 H 1.09008 * 117.50004 * 0.02562 * 16 15 14 29 29 H 1.08995 * 117.50060 * 145.02124 * 16 15 14 30 30 H 1.09000 * 117.49374 * 214.97593 * 17 15 14 31 31 H 1.08996 * 117.49793 * 359.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 1 0.6294 -2.5778 0.8936 11 6 2.2351 -3.6871 -0.0730 12 6 1.4482 -4.6997 -0.9364 13 6 0.5137 -3.8541 -1.7747 14 6 -0.2908 -3.9058 -2.9214 15 6 -0.4639 -5.0987 -3.8258 16 6 -1.2244 -4.8871 -5.1364 17 6 -1.8769 -5.6623 -3.9891 18 7 -0.8647 -2.7408 -3.0714 19 7 -0.4460 -1.9089 -2.0261 20 1 -0.7149 -0.9872 -1.8878 21 6 0.4004 -2.6164 -1.2443 22 1 -0.4849 0.8401 -0.0004 23 1 3.1641 -3.3929 -0.5613 24 1 2.4308 -4.0935 0.9193 25 1 0.8784 -5.3779 -0.3013 26 1 2.1283 -5.2611 -1.5770 27 1 0.3645 -5.8070 -3.8335 28 1 -1.5992 -3.8849 -5.3447 29 1 -0.8967 -5.4565 -6.0061 30 1 -1.9780 -6.7414 -4.1045 31 1 -2.6812 -5.1705 -3.4420 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259611148.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:50 Heat of formation + Delta-G solvation = 73.976043 kcal Electronic energy + Delta-G solvation = -14517.050295 eV Core-core repulsion = 12185.653507 eV Total energy + Delta-G solvation = -2331.396789 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.20311 -38.08617 -36.92458 -34.68682 -31.65920 -29.57328 -28.53073 -25.60500 -24.61814 -23.17307 -21.87701 -20.30279 -19.90903 -18.61508 -17.70355 -16.60714 -16.27093 -15.87479 -15.16338 -14.70055 -14.06503 -13.99161 -13.63123 -13.21397 -12.96597 -12.84247 -12.45920 -12.42940 -12.32654 -11.90912 -11.79158 -11.51619 -11.30954 -11.14350 -10.96365 -10.65240 -9.74420 -8.85568 -8.29197 -6.40743 1.30549 1.39394 1.39825 1.46878 1.98806 2.20696 2.36385 3.01848 3.16019 3.70982 4.01047 4.07813 4.20042 4.29638 4.36339 4.52577 4.79870 4.82538 4.87661 4.99259 5.13730 5.14417 5.22733 5.34479 5.38577 5.46330 5.55451 5.69905 5.76635 6.09561 6.16455 6.64071 6.87574 7.15234 7.29485 8.79250 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.040945 B = 0.008867 C = 0.007783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.676212 B = 3157.195187 C = 3596.613793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.014 3.986 3 Si 0.959 3.041 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.067 0.933 9 C 0.088 3.912 10 H 0.024 0.976 11 C -0.101 4.101 12 C -0.023 4.023 13 C -0.324 4.324 14 C 0.111 3.889 15 C -0.091 4.091 16 C -0.163 4.163 17 C -0.153 4.153 18 N -0.352 5.352 19 N -0.453 5.453 20 H 0.433 0.567 21 C 0.124 3.876 22 H 0.266 0.734 23 H 0.064 0.936 24 H 0.085 0.915 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.140 0.860 28 H 0.077 0.923 29 H 0.126 0.874 30 H 0.131 0.869 31 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.719 -9.460 -4.785 10.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.184 4.184 3 Si 0.785 3.215 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.560 4.560 8 H 0.085 0.915 9 C 0.068 3.932 10 H 0.042 0.958 11 C -0.139 4.139 12 C -0.061 4.061 13 C -0.335 4.335 14 C -0.053 4.053 15 C -0.111 4.111 16 C -0.200 4.200 17 C -0.191 4.191 18 N -0.176 5.176 19 N -0.161 5.161 20 H 0.281 0.719 21 C -0.009 4.009 22 H 0.075 0.925 23 H 0.083 0.917 24 H 0.103 0.897 25 H 0.090 0.910 26 H 0.096 0.904 27 H 0.158 0.842 28 H 0.095 0.905 29 H 0.144 0.856 30 H 0.149 0.851 31 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.228 -8.608 -5.494 10.215 hybrid contribution 0.414 1.639 0.756 1.852 sum 0.186 -6.969 -4.738 8.429 Atomic orbital electron populations 1.69812 1.07189 1.27899 1.51442 1.25777 0.95766 1.02572 0.94272 0.85575 0.78407 0.78685 0.78862 1.20295 1.20991 1.18998 1.21644 0.93675 0.91176 1.49460 0.91521 1.18288 0.91603 0.95145 0.88169 0.95811 1.22414 0.97409 0.93958 1.00114 1.20312 0.94840 0.95592 0.95343 1.21257 1.12188 0.98296 1.01754 1.21281 0.95505 0.93475 0.95085 1.20456 0.97980 0.95118 0.97533 1.23006 1.03115 1.01682 0.92213 1.23023 0.93362 1.01173 1.01502 1.76950 1.26574 1.02851 1.11239 1.46216 1.36599 1.13768 1.19513 0.71906 1.22880 0.90686 0.91133 0.96173 0.92452 0.91689 0.89683 0.91023 0.90400 0.84212 0.90472 0.85574 0.85125 0.90861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.37 10.61 21.45 0.23 -50.14 16 2 C 0.01 0.73 5.32 84.65 0.45 1.19 16 3 Si 0.96 42.18 29.54 68.60 2.03 44.21 16 4 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 6 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 7 C -0.52 -27.54 8.53 25.60 0.22 -27.32 16 8 H 0.07 3.40 7.63 -2.91 -0.02 3.38 16 9 C 0.09 4.35 2.83 -11.60 -0.03 4.32 16 10 H 0.02 1.29 8.14 -2.39 -0.02 1.27 16 11 C -0.10 -3.91 6.62 31.63 0.21 -3.70 16 12 C -0.02 -0.81 6.79 30.60 0.21 -0.60 16 13 C -0.32 -14.31 6.83 -19.90 -0.14 -14.45 16 14 C 0.11 4.69 6.76 43.19 0.29 4.98 16 15 C -0.09 -2.79 6.27 -11.54 -0.07 -2.86 16 16 C -0.16 -4.28 10.14 30.62 0.31 -3.97 16 17 C -0.15 -3.89 10.24 30.62 0.31 -3.58 16 18 N -0.35 -16.67 12.27 -47.25 -0.58 -17.25 16 19 N -0.45 -23.32 7.16 -47.46 -0.34 -23.65 16 20 H 0.43 22.76 7.06 -213.39 -1.51 21.26 16 21 C 0.12 6.26 6.60 41.52 0.27 6.54 16 22 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 23 H 0.06 2.49 7.79 -2.39 -0.02 2.47 16 24 H 0.08 2.83 8.14 -2.38 -0.02 2.81 16 25 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 26 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 27 H 0.14 3.57 8.14 -2.39 -0.02 3.55 16 28 H 0.08 2.40 7.89 -2.38 -0.02 2.38 16 29 H 0.13 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.13 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -61.10 261.64 3.00 -58.10 By element: Atomic # 1 Polarization: 28.55 SS G_CDS: -0.37 Total: 28.18 kcal Atomic # 6 Polarization: -41.48 SS G_CDS: 2.04 Total: -39.45 kcal Atomic # 7 Polarization: -90.35 SS G_CDS: -0.69 Total: -91.04 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -61.10 3.00 -58.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259611148.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.081 kcal (2) G-P(sol) polarization free energy of solvation -61.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds