Wall clock time and date at job start Mon Mar 30 2020 02:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30814 * 1 3 3 Si 1.86802 * 120.00032 * 2 1 4 4 H 1.48501 * 109.46939 * 274.70869 * 3 2 1 5 5 H 1.48498 * 109.47150 * 34.70654 * 3 2 1 6 6 H 1.48494 * 109.47294 * 154.70733 * 3 2 1 7 7 C 1.39962 * 120.00253 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99979 * 162.80687 * 7 2 1 9 9 C 1.41417 * 119.99691 * 342.80590 * 7 2 1 10 10 C 1.41086 * 121.04282 * 156.40205 * 9 7 2 11 11 N 1.31947 * 118.77581 * 180.02562 * 10 9 7 12 12 C 1.31998 * 121.08513 * 0.02562 * 11 10 9 13 13 C 1.50705 * 118.81379 * 179.97438 * 12 11 10 14 14 C 1.54893 * 110.59844 * 123.31832 * 13 12 11 15 15 C 1.54882 * 102.75077 * 156.67541 * 14 13 12 16 16 C 1.54269 * 104.19631 * 322.05900 * 15 14 13 17 17 C 1.53876 * 106.59630 * 23.60884 * 16 15 14 18 18 N 1.31995 * 122.36979 * 0.25909 * 12 11 10 19 19 C 1.31949 * 121.08123 * 359.47110 * 18 12 11 20 20 H 0.97005 * 120.00023 * 0.02562 * 1 2 3 21 21 H 1.08002 * 120.61492 * 0.04584 * 10 9 7 22 22 H 1.08998 * 110.43825 * 0.70226 * 13 12 11 23 23 H 1.08993 * 110.75579 * 274.99570 * 14 13 12 24 24 H 1.09001 * 110.75179 * 38.35853 * 14 13 12 25 25 H 1.09007 * 110.48726 * 203.38184 * 15 14 13 26 26 H 1.09000 * 110.48832 * 80.73480 * 15 14 13 27 27 H 1.09004 * 110.03187 * 264.32843 * 16 15 14 28 28 H 1.08995 * 110.07294 * 142.91495 * 16 15 14 29 29 H 1.09008 * 110.03304 * 240.71527 * 17 16 15 30 30 H 1.09005 * 110.07242 * 119.31289 * 17 16 15 31 31 H 1.07997 * 120.61009 * 180.24101 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3901 2.1039 -1.3954 5 1 1.4929 2.6219 0.7972 6 1 3.5859 1.4135 0.5981 7 6 2.0080 -1.2121 0.0005 8 1 3.0519 -1.2330 -0.2759 9 6 1.3483 -2.4092 0.3631 10 6 1.8229 -3.6632 -0.0760 11 7 1.1724 -4.7517 0.2886 12 6 0.0962 -4.6799 1.0495 13 6 -0.6074 -5.9556 1.4349 14 6 -0.7042 -6.0805 2.9758 15 6 -1.9098 -7.0340 3.1664 16 6 -2.9044 -6.6110 2.0656 17 6 -2.0763 -5.9254 0.9648 18 7 -0.3890 -3.5305 1.4805 19 6 0.1940 -2.3871 1.1741 20 1 -0.4850 0.8401 -0.0004 21 1 2.7026 -3.7309 -0.6989 22 1 -0.0899 -6.8178 1.0142 23 1 0.2049 -6.5204 3.3856 24 1 -0.9037 -5.1099 3.4301 25 1 -2.3521 -6.8972 4.1532 26 1 -1.6027 -8.0702 3.0252 27 1 -3.6362 -5.9126 2.4719 28 1 -3.4099 -7.4878 1.6611 29 1 -2.4062 -4.8943 0.8368 30 1 -2.1791 -6.4692 0.0257 31 1 -0.2074 -1.4514 1.5340 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259613265.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:37 Heat of formation + Delta-G solvation = 9.008587 kcal Electronic energy + Delta-G solvation = -14213.282823 eV Core-core repulsion = 11879.068834 eV Total energy + Delta-G solvation = -2334.213989 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.27415 -37.15144 -34.25299 -31.91241 -30.88488 -28.36190 -28.18441 -25.13751 -22.73793 -21.85834 -20.01198 -19.32528 -17.55580 -16.25420 -15.63090 -15.21982 -14.77298 -13.81383 -13.43734 -13.11963 -12.84709 -12.55159 -12.04920 -11.76642 -11.38959 -11.17583 -10.85757 -10.80798 -10.65959 -10.59055 -10.52267 -10.17011 -9.94567 -9.54759 -9.23622 -9.12869 -7.95171 -7.54939 -7.01871 -4.61488 2.51021 2.85836 2.95863 2.99061 3.06432 3.75309 4.46576 5.07077 5.11682 5.16749 5.57929 5.63331 5.82514 5.94125 6.03897 6.10874 6.12632 6.25193 6.30658 6.35421 6.44489 6.53213 6.75963 6.79576 6.88469 6.89628 6.97390 7.06749 7.62279 7.76338 8.14367 8.35776 8.49489 8.91800 9.87008 9.91124 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.058224 B = 0.006830 C = 0.006504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.783125 B = 4098.443841 C = 4304.313780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.073 3.927 3 Si 0.917 3.083 4 H -0.268 1.268 5 H -0.273 1.273 6 H -0.258 1.258 7 C -0.437 4.437 8 H 0.086 0.914 9 C 0.011 3.989 10 C 0.009 3.991 11 N -0.498 5.498 12 C 0.163 3.837 13 C 0.003 3.997 14 C -0.111 4.111 15 C -0.123 4.123 16 C -0.120 4.120 17 C -0.113 4.113 18 N -0.497 5.497 19 C 0.075 3.925 20 H 0.288 0.712 21 H 0.134 0.866 22 H 0.076 0.924 23 H 0.056 0.944 24 H 0.076 0.924 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.053 0.947 31 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.064 -4.103 2.977 5.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.147 4.147 3 Si 0.740 3.260 4 H -0.193 1.193 5 H -0.197 1.197 6 H -0.182 1.182 7 C -0.467 4.467 8 H 0.104 0.896 9 C 0.005 3.995 10 C -0.160 4.160 11 N -0.210 5.210 12 C -0.100 4.100 13 C -0.018 4.018 14 C -0.150 4.150 15 C -0.160 4.160 16 C -0.157 4.157 17 C -0.152 4.152 18 N -0.209 5.209 19 C -0.097 4.097 20 H 0.099 0.901 21 H 0.152 0.848 22 H 0.095 0.905 23 H 0.075 0.925 24 H 0.095 0.905 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -2.760 -4.854 3.208 6.440 hybrid contribution 0.834 1.748 -0.460 1.990 sum -1.926 -3.106 2.748 4.573 Atomic orbital electron populations 1.69737 1.07800 1.30179 1.33215 1.26052 0.94853 1.01904 0.91884 0.86143 0.80668 0.79824 0.79320 1.19287 1.19730 1.18160 1.19533 0.98043 0.90580 1.38545 0.89613 1.19242 0.94338 0.94384 0.91559 1.22789 1.01718 0.88107 1.03367 1.67447 1.07934 1.33982 1.11679 1.21661 0.94123 0.92500 1.01753 1.20236 0.93880 0.92825 0.94838 1.22511 0.96873 0.99774 0.95797 1.22336 0.96472 0.98973 0.98235 1.22092 0.97901 0.99457 0.96274 1.22163 0.94461 1.01340 0.97196 1.67519 1.31923 0.98896 1.22584 1.23343 0.95187 0.94745 0.96455 0.90118 0.84847 0.90543 0.92496 0.90541 0.92245 0.92196 0.92163 0.92649 0.90924 0.92800 0.82541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.22 10.93 55.55 0.61 -18.61 16 2 C 0.07 1.71 5.20 -17.34 -0.09 1.62 16 3 Si 0.92 17.42 29.59 -169.99 -5.03 12.39 16 4 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 5 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 6 H -0.26 -4.87 7.11 56.52 0.40 -4.46 16 7 C -0.44 -10.94 9.11 -37.73 -0.34 -11.29 16 8 H 0.09 2.02 7.90 -52.48 -0.41 1.61 16 9 C 0.01 0.30 5.60 -106.53 -0.60 -0.30 16 10 C 0.01 0.23 11.11 -16.42 -0.18 0.05 16 11 N -0.50 -12.57 10.28 -10.09 -0.10 -12.68 16 12 C 0.16 3.94 6.45 -156.84 -1.01 2.93 16 13 C 0.00 0.05 3.23 -90.11 -0.29 -0.24 16 14 C -0.11 -1.92 6.30 -24.74 -0.16 -2.08 16 15 C -0.12 -1.71 6.83 -25.07 -0.17 -1.88 16 16 C -0.12 -1.73 6.80 -25.61 -0.17 -1.90 16 17 C -0.11 -2.01 6.33 -25.62 -0.16 -2.17 16 18 N -0.50 -12.62 9.17 -10.09 -0.09 -12.72 16 19 C 0.08 1.99 10.00 -16.42 -0.16 1.83 16 20 H 0.29 6.34 8.30 -40.82 -0.34 6.00 16 21 H 0.13 3.04 8.06 -52.49 -0.42 2.62 16 22 H 0.08 1.46 8.12 -51.93 -0.42 1.04 16 23 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 24 H 0.08 1.46 7.63 -51.93 -0.40 1.06 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 1.46 7.40 -51.92 -0.38 1.08 16 30 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.16 4.15 6.20 -52.49 -0.33 3.83 16 LS Contribution 260.72 15.07 3.93 3.93 Total: -1.00 -27.23 260.72 -8.07 -35.30 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -4.04 Total: 5.82 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: -3.34 Total: -13.44 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: 0.41 Total: -44.00 kcal Atomic # 14 Polarization: 17.42 SS G_CDS: -5.03 Total: 12.39 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -27.23 -8.07 -35.30 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259613265.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.312 kcal (2) G-P(sol) polarization free energy of solvation -27.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds