Wall clock time and date at job start Mon Mar 30 2020 02:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30814 * 1 3 3 Si 1.86802 * 120.00032 * 2 1 4 4 H 1.48501 * 109.46939 * 274.70869 * 3 2 1 5 5 H 1.48498 * 109.47150 * 34.70654 * 3 2 1 6 6 H 1.48494 * 109.47294 * 154.70733 * 3 2 1 7 7 C 1.39962 * 120.00253 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99979 * 162.80687 * 7 2 1 9 9 C 1.41417 * 119.99691 * 342.80590 * 7 2 1 10 10 C 1.41086 * 121.04282 * 156.40205 * 9 7 2 11 11 N 1.31947 * 118.77581 * 180.02562 * 10 9 7 12 12 C 1.31998 * 121.08513 * 0.02562 * 11 10 9 13 13 C 1.50705 * 118.81379 * 179.97438 * 12 11 10 14 14 C 1.54893 * 110.59844 * 123.31832 * 13 12 11 15 15 C 1.54882 * 102.75077 * 156.67541 * 14 13 12 16 16 C 1.54269 * 104.19631 * 322.05900 * 15 14 13 17 17 C 1.53876 * 106.59630 * 23.60884 * 16 15 14 18 18 N 1.31995 * 122.36979 * 0.25909 * 12 11 10 19 19 C 1.31949 * 121.08123 * 359.47110 * 18 12 11 20 20 H 0.97005 * 120.00023 * 0.02562 * 1 2 3 21 21 H 1.08002 * 120.61492 * 0.04584 * 10 9 7 22 22 H 1.08998 * 110.43825 * 0.70226 * 13 12 11 23 23 H 1.08993 * 110.75579 * 274.99570 * 14 13 12 24 24 H 1.09001 * 110.75179 * 38.35853 * 14 13 12 25 25 H 1.09007 * 110.48726 * 203.38184 * 15 14 13 26 26 H 1.09000 * 110.48832 * 80.73480 * 15 14 13 27 27 H 1.09004 * 110.03187 * 264.32843 * 16 15 14 28 28 H 1.08995 * 110.07294 * 142.91495 * 16 15 14 29 29 H 1.09008 * 110.03304 * 240.71527 * 17 16 15 30 30 H 1.09005 * 110.07242 * 119.31289 * 17 16 15 31 31 H 1.07997 * 120.61009 * 180.24101 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3901 2.1039 -1.3954 5 1 1.4929 2.6219 0.7972 6 1 3.5859 1.4135 0.5981 7 6 2.0080 -1.2121 0.0005 8 1 3.0519 -1.2330 -0.2759 9 6 1.3483 -2.4092 0.3631 10 6 1.8229 -3.6632 -0.0760 11 7 1.1724 -4.7517 0.2886 12 6 0.0962 -4.6799 1.0495 13 6 -0.6074 -5.9556 1.4349 14 6 -0.7042 -6.0805 2.9758 15 6 -1.9098 -7.0340 3.1664 16 6 -2.9044 -6.6110 2.0656 17 6 -2.0763 -5.9254 0.9648 18 7 -0.3890 -3.5305 1.4805 19 6 0.1940 -2.3871 1.1741 20 1 -0.4850 0.8401 -0.0004 21 1 2.7026 -3.7309 -0.6989 22 1 -0.0899 -6.8178 1.0142 23 1 0.2049 -6.5204 3.3856 24 1 -0.9037 -5.1099 3.4301 25 1 -2.3521 -6.8972 4.1532 26 1 -1.6027 -8.0702 3.0252 27 1 -3.6362 -5.9126 2.4719 28 1 -3.4099 -7.4878 1.6611 29 1 -2.4062 -4.8943 0.8368 30 1 -2.1791 -6.4692 0.0257 31 1 -0.2074 -1.4514 1.5340 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259613265.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:37 Heat of formation + Delta-G solvation = -5.620138 kcal Electronic energy + Delta-G solvation = -14213.917172 eV Core-core repulsion = 11879.068834 eV Total energy + Delta-G solvation = -2334.848338 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.14322 -38.59581 -36.09750 -33.87875 -32.69127 -29.95422 -29.50879 -26.92367 -24.71667 -23.66395 -21.27281 -20.85674 -19.46501 -18.07627 -17.33766 -16.87996 -16.24032 -15.37403 -15.14118 -15.00359 -14.19260 -14.08707 -13.88053 -13.59490 -13.10281 -12.89406 -12.38560 -12.19350 -12.04150 -11.97294 -11.88577 -11.52567 -11.34314 -11.26733 -11.10922 -11.07598 -9.89321 -9.52820 -8.83661 -6.55045 0.65399 0.83461 1.39488 1.49311 1.56938 2.15170 2.64197 3.52473 3.55757 3.78741 3.98356 4.07511 4.17235 4.45590 4.63076 4.66674 4.75050 4.79761 4.91725 4.92775 4.97532 5.07286 5.08740 5.16816 5.27745 5.38292 5.51266 5.56799 5.72695 5.84042 6.22567 6.39917 6.59844 6.94162 7.90266 8.13231 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.058224 B = 0.006830 C = 0.006504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.783125 B = 4098.443841 C = 4304.313780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.034 3.966 3 Si 0.996 3.004 4 H -0.259 1.259 5 H -0.265 1.265 6 H -0.254 1.254 7 C -0.459 4.459 8 H 0.096 0.904 9 C -0.013 4.013 10 C -0.003 4.003 11 N -0.508 5.508 12 C 0.150 3.850 13 C -0.004 4.004 14 C -0.110 4.110 15 C -0.112 4.112 16 C -0.114 4.114 17 C -0.111 4.111 18 N -0.503 5.503 19 C 0.052 3.948 20 H 0.298 0.702 21 H 0.153 0.847 22 H 0.083 0.917 23 H 0.062 0.938 24 H 0.052 0.948 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.061 0.939 28 H 0.083 0.917 29 H 0.040 0.960 30 H 0.062 0.938 31 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.080 -4.378 3.282 5.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.183 4.183 3 Si 0.815 3.185 4 H -0.184 1.184 5 H -0.189 1.189 6 H -0.177 1.177 7 C -0.488 4.488 8 H 0.114 0.886 9 C -0.020 4.020 10 C -0.173 4.173 11 N -0.221 5.221 12 C -0.113 4.113 13 C -0.024 4.024 14 C -0.148 4.148 15 C -0.149 4.149 16 C -0.151 4.151 17 C -0.150 4.150 18 N -0.216 5.216 19 C -0.120 4.120 20 H 0.109 0.891 21 H 0.170 0.830 22 H 0.101 0.899 23 H 0.081 0.919 24 H 0.070 0.930 25 H 0.096 0.904 26 H 0.100 0.900 27 H 0.080 0.920 28 H 0.102 0.898 29 H 0.059 0.941 30 H 0.081 0.919 31 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.791 -5.145 3.515 6.827 hybrid contribution 0.822 1.825 -0.593 2.088 sum -1.969 -3.319 2.922 4.841 Atomic orbital electron populations 1.69779 1.09452 1.31855 1.32723 1.27011 0.95538 1.05224 0.90558 0.84967 0.79104 0.74721 0.79659 1.18399 1.18885 1.17729 1.19875 0.98643 0.91154 1.39130 0.88637 1.19539 0.94752 0.95492 0.92197 1.23160 1.02422 0.88045 1.03631 1.67548 1.08441 1.33930 1.12139 1.22578 0.93981 0.93760 1.00948 1.20456 0.94574 0.90633 0.96762 1.22473 0.99006 0.99691 0.93651 1.22316 0.94486 0.99058 0.99033 1.22077 0.97588 1.00228 0.95211 1.22133 0.93713 1.00047 0.99117 1.67548 1.32052 0.99148 1.22815 1.23296 0.96176 0.94913 0.97646 0.89080 0.82980 0.89910 0.91905 0.92953 0.90352 0.89984 0.92015 0.89845 0.94142 0.91917 0.83461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.22 10.93 21.83 0.24 -39.98 16 2 C 0.03 1.60 5.20 85.26 0.44 2.04 16 3 Si 1.00 34.90 29.59 68.60 2.03 36.93 16 4 H -0.26 -8.73 7.11 99.48 0.71 -8.02 16 5 H -0.26 -8.87 7.11 99.48 0.71 -8.16 16 6 H -0.25 -8.68 7.11 99.48 0.71 -7.97 16 7 C -0.46 -23.19 9.11 23.47 0.21 -22.98 16 8 H 0.10 4.49 7.90 -2.91 -0.02 4.47 16 9 C -0.01 -0.72 5.60 -21.10 -0.12 -0.83 16 10 C 0.00 -0.18 11.11 85.37 0.95 0.77 16 11 N -0.51 -26.02 10.28 -185.83 -1.91 -27.93 16 12 C 0.15 7.43 6.45 138.63 0.89 8.32 16 13 C 0.00 -0.15 3.23 -10.46 -0.03 -0.19 16 14 C -0.11 -3.68 6.30 31.88 0.20 -3.48 16 15 C -0.11 -2.77 6.83 31.67 0.22 -2.56 16 16 C -0.11 -2.99 6.80 31.32 0.21 -2.77 16 17 C -0.11 -3.89 6.33 31.32 0.20 -3.69 16 18 N -0.50 -26.42 9.17 -185.83 -1.70 -28.12 16 19 C 0.05 2.84 10.00 85.37 0.85 3.69 16 20 H 0.30 13.12 8.30 -92.70 -0.77 12.35 16 21 H 0.15 6.99 8.06 -2.91 -0.02 6.97 16 22 H 0.08 3.09 8.12 -2.39 -0.02 3.07 16 23 H 0.06 1.99 8.14 -2.39 -0.02 1.98 16 24 H 0.05 2.00 7.63 -2.39 -0.02 1.98 16 25 H 0.08 1.69 8.14 -2.38 -0.02 1.68 16 26 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 28 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.04 1.65 7.40 -2.38 -0.02 1.63 16 30 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 31 H 0.15 8.18 6.20 -2.91 -0.02 8.16 16 Total: -1.00 -59.40 260.72 3.80 -55.61 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: 1.12 Total: 25.17 kcal Atomic # 6 Polarization: -25.70 SS G_CDS: 4.03 Total: -21.67 kcal Atomic # 7 Polarization: -92.65 SS G_CDS: -3.38 Total: -96.03 kcal Atomic # 14 Polarization: 34.90 SS G_CDS: 2.03 Total: 36.93 kcal Total: -59.40 3.80 -55.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259613265.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.985 kcal (2) G-P(sol) polarization free energy of solvation -59.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds