Wall clock time and date at job start Mon Mar 30 2020 02:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48500 * 109.46999 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46942 * 300.00690 * 3 2 1 6 6 H 1.48504 * 109.46979 * 60.00603 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 2 11 11 H 1.08991 * 109.30491 * 55.41341 * 10 9 7 12 12 N 1.46668 * 109.30230 * 296.01844 * 10 9 7 13 13 C 1.47154 * 110.22045 * 187.42570 * 12 10 9 14 14 C 1.52870 * 108.57078 * 71.21494 * 13 12 10 15 15 C 1.50816 * 109.95737 * 309.38553 * 14 13 12 16 16 N 1.32451 * 118.31159 * 196.83987 * 15 14 13 17 17 C 1.31618 * 122.18278 * 180.43578 * 16 15 14 18 18 C 1.38238 * 120.68100 * 0.02668 * 17 16 15 19 19 C 1.38487 * 118.93223 * 359.88909 * 18 17 16 20 20 C 1.37784 * 121.40724 * 17.14730 * 15 14 13 21 21 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 23 23 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 24 24 H 1.00897 * 111.00220 * 310.83381 * 12 10 9 25 25 H 1.08996 * 109.61150 * 311.49329 * 13 12 10 26 26 H 1.09005 * 109.77192 * 191.03467 * 13 12 10 27 27 H 1.09007 * 109.39039 * 189.23456 * 14 13 12 28 28 H 1.08999 * 109.39268 * 69.53521 * 14 13 12 29 29 H 1.08003 * 119.66164 * 180.02562 * 17 16 15 30 30 H 1.07995 * 120.53215 * 179.91127 * 18 17 16 31 31 H 1.07999 * 120.65030 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 1 2.9233 -3.5564 0.8463 12 7 3.0220 -3.6359 -1.2445 13 6 3.8583 -4.8423 -1.3474 14 6 2.9510 -6.0418 -1.6211 15 6 1.8205 -6.0705 -0.6232 16 7 1.1365 -7.1958 -0.4810 17 6 0.1306 -7.3031 0.3610 18 6 -0.2552 -6.2281 1.1397 19 6 0.4357 -5.0336 1.0222 20 6 1.4933 -4.9595 0.1232 21 1 -0.4850 0.8400 0.0004 22 1 0.6241 -2.5568 -0.8903 23 1 0.6247 -2.5571 0.8897 24 1 2.4168 -3.5459 -2.0468 25 1 4.3957 -4.9959 -0.4116 26 1 4.5709 -4.7284 -2.1643 27 1 3.5310 -6.9609 -1.5374 28 1 2.5424 -5.9641 -2.6286 29 1 -0.3988 -8.2408 0.4444 30 1 -1.0818 -6.3184 1.8287 31 1 0.1581 -4.1762 1.6174 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259649030.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:55 Heat of formation + Delta-G solvation = 26.430809 kcal Electronic energy + Delta-G solvation = -14436.251558 eV Core-core repulsion = 12102.793054 eV Total energy + Delta-G solvation = -2333.458505 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.36619 -36.90053 -33.88391 -32.41708 -30.60816 -30.25891 -27.33776 -24.34909 -23.46472 -22.92995 -20.56517 -20.00049 -16.66702 -16.28730 -16.02187 -15.26037 -14.56221 -14.41143 -13.94541 -13.56505 -13.30067 -12.68494 -12.49994 -12.26193 -11.99811 -11.64546 -11.10322 -10.98888 -10.67485 -10.57162 -10.40323 -9.78113 -9.29866 -9.10376 -9.00521 -8.38858 -8.33755 -7.82532 -5.97536 -3.96897 1.40838 1.62635 3.34512 3.42327 3.48094 4.06423 4.43914 4.50610 4.84651 5.04821 5.16701 5.26153 5.38461 5.41409 5.43973 5.58944 5.72010 5.90925 6.04895 6.10072 6.25188 6.27540 6.43029 6.51241 6.83587 7.02807 7.38782 7.58705 7.78543 7.98773 8.05762 8.25422 8.44295 9.10207 9.66235 11.14143 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.038863 B = 0.008305 C = 0.007078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.303676 B = 3370.500818 C = 3954.969413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.052 3.948 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.287 1.287 7 C -0.499 4.499 8 H 0.066 0.934 9 C 0.031 3.969 10 C 0.129 3.871 11 H 0.085 0.915 12 N -0.656 5.656 13 C 0.053 3.947 14 C -0.103 4.103 15 C 0.118 3.882 16 N -0.494 5.494 17 C 0.085 3.915 18 C -0.180 4.180 19 C -0.064 4.064 20 C -0.143 4.143 21 H 0.258 0.742 22 H 0.017 0.983 23 H 0.025 0.975 24 H 0.342 0.658 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.148 0.852 30 H 0.130 0.870 31 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.444 -11.304 0.080 11.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.148 4.148 3 Si 0.721 3.279 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.213 1.213 7 C -0.537 4.537 8 H 0.084 0.916 9 C -0.006 4.006 10 C 0.018 3.982 11 H 0.103 0.897 12 N -0.283 5.283 13 C -0.078 4.078 14 C -0.143 4.143 15 C -0.018 4.018 16 N -0.203 5.203 17 C -0.073 4.073 18 C -0.200 4.200 19 C -0.091 4.091 20 C -0.147 4.147 21 H 0.068 0.932 22 H 0.035 0.965 23 H 0.043 0.957 24 H 0.160 0.840 25 H 0.089 0.911 26 H 0.098 0.902 27 H 0.099 0.901 28 H 0.097 0.903 29 H 0.166 0.834 30 H 0.148 0.852 31 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.070 -11.477 -0.180 11.882 hybrid contribution -0.804 0.840 0.367 1.219 sum 2.267 -10.637 0.187 10.877 Atomic orbital electron populations 1.69973 1.06051 1.26403 1.51745 1.25026 0.94805 0.99286 0.95703 0.86513 0.80260 0.83770 0.77321 1.19634 1.21238 1.21324 1.21213 0.93568 0.89936 1.48991 0.91614 1.19284 0.92875 0.90881 0.97538 1.20783 0.94508 0.90157 0.92705 0.89690 1.60951 1.26723 1.35805 1.04830 1.22144 0.95790 0.87618 1.02241 1.21141 0.94723 1.01413 0.97033 1.20965 0.96002 0.88541 0.96284 1.67426 1.07144 1.26681 1.19034 1.22508 0.93842 0.98401 0.92588 1.22108 1.01680 0.94486 1.01759 1.21803 0.93174 0.97710 0.96380 1.21822 0.97702 0.98595 0.96604 0.93219 0.96502 0.95660 0.83975 0.91094 0.90160 0.90090 0.90261 0.83424 0.85208 0.83957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.52 13.29 55.43 0.74 -25.78 16 2 C 0.05 1.45 5.46 -17.82 -0.10 1.36 16 3 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.50 -13.58 8.81 -34.44 -0.30 -13.88 16 8 H 0.07 1.79 7.74 -52.49 -0.41 1.39 16 9 C 0.03 0.77 4.18 -27.88 -0.12 0.65 16 10 C 0.13 2.60 2.47 -69.10 -0.17 2.43 16 11 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 12 N -0.66 -12.16 6.33 -108.12 -0.68 -12.84 16 13 C 0.05 0.77 6.61 -3.75 -0.02 0.75 16 14 C -0.10 -1.50 6.06 -27.89 -0.17 -1.67 16 15 C 0.12 2.04 6.66 -82.43 -0.55 1.49 16 16 N -0.49 -8.38 10.22 -9.47 -0.10 -8.48 16 17 C 0.09 1.27 11.19 -17.64 -0.20 1.07 16 18 C -0.18 -2.67 10.12 -39.49 -0.40 -3.07 16 19 C -0.06 -1.12 9.17 -39.20 -0.36 -1.48 16 20 C -0.14 -2.64 5.47 -104.61 -0.57 -3.22 16 21 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 22 H 0.02 0.45 8.11 -51.93 -0.42 0.02 16 23 H 0.03 0.64 6.29 -51.93 -0.33 0.32 16 24 H 0.34 6.39 8.54 -39.29 -0.34 6.06 16 25 H 0.07 1.04 8.05 -51.93 -0.42 0.62 16 26 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.15 1.68 8.06 -52.48 -0.42 1.26 16 30 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 31 H 0.14 2.49 6.43 -52.49 -0.34 2.16 16 LS Contribution 259.06 15.07 3.90 3.90 Total: -1.00 -30.17 259.06 -8.04 -38.20 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -3.92 Total: 3.99 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: -2.96 Total: -15.57 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: -0.05 Total: -47.10 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -30.17 -8.04 -38.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259649030.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.635 kcal (2) G-P(sol) polarization free energy of solvation -30.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds